Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi02g01409 ATGAACACACTTCCGGCGAAAATGGTTGAGACTCTCTCTCTAATCAGAACGTTTGCGACTACTTTTCCCTCTTCTCACCGAGGATCTACCAATTATGGGCTAGTTTCGTTCTTGCAACAAAATAGAGGATCAAGGGTGAGTTTTCCTAAAACGACATGGAGTTTGGAAAAATGTAGTATGCGGGTTGAGAATTGTTTGCAAGCACTTCGTCCTGCCTCTGAAGCTTTTGCTCAAGAGGCTACAGATGCTCTTAAAGCTGGGAAGGTTATTGCGGTCCCTACTGATACTCTCTATGGACTCGCTTGTGACGCTTGTACAAAGTTCTTGGTGAGAGGTCTTGACCAGGGGTGCGTGTCTCACACTCACTCCCTTGGTTATGTCATGGTTGATCTGGGTGTGCAAAGCAAGGGACTCTTCTTCAGGGAAAGATGTCTTTCAGAGGCTTTGAATTGTTTTGTAAAGTTAGATCTTTGTTGCGGTTCTTCTGAAGCAATCCATAGGATTTATGAAATTAAAGGACGTAAACTTACAAGCCCTCTCGCCATTTGTGTTGGTGATGTCTCTGACATAACTCGTTTTGCTGTCACAGACCATTTGCCTTCTGGTTTGCTTGATTCTCTCCTTCCTGGGCCTGTAACTGTTGTACTGAAAAGAGGTTTGTATTTTGCAGGTGAGGCGAGTATTCTTGAGAAGTCTTTGAACCCTGGATTGGACAGTATCGGAGTCCGTGTACCTGATGCTGACTTTATTCGGCTTATTTCTCGTAGATCAGAGACAGCATTGGCCCTTACAAGTGCTAATTTAAGTGGACAACCAAGCAGTGTTTGTGTTAATGACTTTGAAAACCTATGGCAACACTGTGCTTATGTATACGATGGTGGTGTTCTTCCTGCTGGACGAGCGGGCTCGACGATCATTGACCTCACCGAGCGTGGCACATATAAGATTCTCAGAGCTGGAAGTGCAAAGGAGCAAACTGTTGCAACACTTGAAAGACCCAACAACAATAATATGGAGAATGATTCTTCTTCCGCTATGGATATTAAAGGCCTTCCCACTTTCGACGGCAAATACTTACTCTACAATGTTCTCGGCAATTTCTTTGAGGTCTCTTCCAAGTACTCCCCTTCAATTCAACCTGTTGGACGCGGTGCTTACGGTATTTTCTCGTTATTAATATGTCTGAATTCCCCTGTTGAATGGTTTTTTCAATCATGCCCATTTTTCTCTATCTTGATCGATGCTTTGTTATCTGCTAAGATTTTGGTAATTTGCTTGTTCAGTTGTACCACCAATTCTGAGACGAAAGAAGAGGTAGCGATAAAGAAGATTGGGAATGCTTTTGATAATAGGATTGATGCCAAGAGGACCCTTCGTGAGATTAAACTTCTTTGCCATATGGATCATGACAATGTATTTATCCCAACTGCTTCTCTGTACATACTCACCTTGATTATAAAAATCAAAGATATAATTCCTCCACCAGAGAAGGAGAAATTCAATGATGTATATATTGTGTATGAATTAATGGACACTGACCTGCACCAGATCATTCGCTCTACCCAGGCTCTGACAGACGATCACTGTCAGTACTTCTTGTACCAATTACTGCGAGGTTTGAAGTATTTACACTCTGCAAATGTCTTGCACCGCGATCTAAAACCAAGCAACCTGCTTCTTAATGCAAATTGTGACCTCAAGATTTGTGACTTTGGGTTAGCAAGAACAACATCAGAGACAGATTTCATGACAGAATATGTTGTAACGCGATGGTATCGAGCCCCTGAGCTACTACTCAACACTTCTGAATATACTGCAGCGATAGATATTTGGTCGGTTGGATGTATTCTCATGGAAATTCTTAGGAGGGAGCCACTGTTCCCTGGTAAAGACTATGTGCAGCAATTGGGGCTTATAACTGAGTTGCTAGGTTCACCAGATGATTTGGATCTTGGGTTTCTTAGAAGTGATAATGCGAGGAAGTATGTTAAACAGCTTCCTCATTTCCCGAAACAACCGCTGATCGAAAAGTTCCCAGATCTTCCTCCACTGGCAGTTGATCTTGCAGAGAGGATGCTTCTCTTTGATCCAAGCAAGAGAATAACTGTTGAGGAGGCCATGAATCACCCATATATAGTAAGTCTTCATGAAATCAATGAAGAACCAACCTGCCATTCTCCTTTCAACTTCGATTTCGAACAGGCATCCTTGGATGAAGAAGACATAAAAGAGCTTATATGGAGGGAGTCTCTCAAGTTCAATCCAAACCACATTTAA 2277 42.34 MNTLPAKMVETLSLIRTFATTFPSSHRGSTNYGLVSFLQQNRGSRVSFPKTTWSLEKCSMRVENCLQALRPASEAFAQEATDALKAGKVIAVPTDTLYGLACDACTKFLVRGLDQGCVSHTHSLGYVMVDLGVQSKGLFFRERCLSEALNCFVKLDLCCGSSEAIHRIYEIKGRKLTSPLAICVGDVSDITRFAVTDHLPSGLLDSLLPGPVTVVLKRGLYFAGEASILEKSLNPGLDSIGVRVPDADFIRLISRRSETALALTSANLSGQPSSVCVNDFENLWQHCAYVYDGGVLPAGRAGSTIIDLTERGTYKILRAGSAKEQTVATLERPNNNNMENDSSSAMDIKGLPTFDGKYLLYNVLGNFFEVSSKYSPSIQPVGRGAYGIFSLLICLNSPVEWFFQSCPFFSILIDALLSAKILVICLFSCTTNSETKEEVAIKKIGNAFDNRIDAKRTLREIKLLCHMDHDNVFIPTASLYILTLIIKIKDIIPPPEKEKFNDVYIVYELMDTDLHQIIRSTQALTDDHCQYFLYQLLRGLKYLHSANVLHRDLKPSNLLLNANCDLKICDFGLARTTSETDFMTEYVVTRWYRAPELLLNTSEYTAAIDIWSVGCILMEILRREPLFPGKDYVQQLGLITELLGSPDDLDLGFLRSDNARKYVKQLPHFPKQPLIEKFPDLPPLAVDLAERMLLFDPSKRITVEEAMNHPYIVSLHEINEEPTCHSPFNFDFEQASLDEEDIKELIWRESLKFNPNHI 758
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 19449133 19463276 + Lsi02G014090.1 Lsi02g01409 656151
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi02g01409 758 SUPERFAMILY YrdC/RibB 75 107 IPR017945 -
Lsi02g01409 758 ProSiteProfiles Protein kinase domain profile. 375 712 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi02g01409 758 Pfam Telomere recombination 160 320 IPR006070 GO:0003725
Lsi02g01409 758 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 13 427 757 - -
Lsi02g01409 758 ProSiteProfiles YrdC-like domain profile. 74 322 IPR006070 GO:0003725
Lsi02g01409 758 Gene3D Phosphorylase Kinase; domain 1 426 749 - -
Lsi02g01409 758 SUPERFAMILY YrdC/RibB 159 325 IPR017945 -
Lsi02g01409 758 Pfam Protein kinase domain 431 712 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi02g01409 758 Gene3D DHBP synthase 67 115 - -
Lsi02g01409 758 Gene3D DHBP synthase 155 331 - -
Lsi02g01409 758 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 353 390 - -
Lsi02g01409 758 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 427 757 - -
Lsi02g01409 758 Gene3D Transferase(Phosphotransferase) domain 1 510 739 - -
Lsi02g01409 758 SMART serkin_6 375 712 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi02g01409 758 SUPERFAMILY Protein kinase-like (PK-like) 431 718 IPR011009 -
Lsi02g01409 758 ProSitePatterns Serine/Threonine protein kinases active-site signature. 548 560 IPR008271 GO:0004672|GO:0006468
Lsi02g01409 758 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 13 353 390 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g01409 Lsi-Chr2:19449133 Lsi09g00226 Lsi-Chr9:2368024 0 dispersed
Lsi02g01406 Lsi-Chr2:19325394 Lsi02g01409 Lsi-Chr2:19449133 5.17E-165 proximal
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
83403 PF00069 Pkinase 9.70E-60 CL0016 Lsi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi02g01409 K04371 - csv:101218403 699.508