Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi02g01412 ATGGGTTGTTTTCGTTGCACCGGTTCATCCAGCAAGAAATCGGAGAATATCGAACAAAACAACCCCAATACCTTCGATTCCAAAACCCACAAGCCAGATGATCTAACGCCTTCAGATAAAGCCAAAGTAAATTCAAGTTTGGCAGTAAAGAGGGATTCTGATGTGAAGGTAGTTGTGTCTAAAGATAACCAATTGGCTTTAGATGTAAAGAAATTGAATTTAAAAGATGAGGTTTCTGAGGAAGGAGAATCCAATGGCCGTGCCAAGACTTTTACATTTGAAGAACTTGCGGCCGCGACGGGCAATTTCAGGTCAGATTGCTTCTTGGGTGAAGGAGGATTTGGCAAAGTTTACAAGGGGTACTTGCAGAATGAGGTTGTAGCAATCAAACAACTTGACCGCAATGGACTTCAAGGAATTCGAGAGTTTGTTGTTGAAGTCTTGACTTTAAGTCTAGCCGATCATCCTAACCTTGTAAAACTTATTGGCTTTTGTGCTGAAGGGGATCAGCGGTTGTTGGTTTATGAATATATGCCATTGGGATCATTGGAAAACCATTTACACGATCTTCGACCCAGTGCAAAAGTAATTGATTGGAACACAAGAATGAAAATAGCAGCCGGTGCAGCGAGGGGGTTGGAGTATTTGCATGAGAAGATGAAACCCCCGGTTATATATCGTGATTTGAAATGCTCAAACATTTTGCTCGGTGAAGGATATCATTCAAAGCTATCTGATTTCGGGTTGGCTAAAGTAGGTCCTATTGGGGATAAAACCCACGTTTCAACCAGGGTTATGGGCACATATGGGTATTGTGCTCCAGATTATGCAATGACGGGTCAGCTGACATTCAAATCAGATATTTACAGCTTTGGCGTTGTTTTATTGGAACTCATCACGGGCAGGAAAGCAATCGATCATTCAAAACCTCATTCGGAGCAAAATCTTGTGGCTTGGGCGCGACCCTTGTTCCGAGACCGGAAGAAGTTCTCACAAATGGTCGATCCAATGCTCCACGGACAATATCCTGTGAGAGGATTATACCAATCTCTAGCCATAGCCGCAATGTGTGTTCAGGAGCAACCGAATATGCGGCCAGTTATATCTGATGTGGTAACCGCTTTAAACTACCTAGCGTCCCAGAAATATGATCCCCAAACTCAACCACACCAAAGCACCCAAAAGAGACCATCTTCTCTTAGAACGGAACGGGACAATGATAAGAAGGAACGGGATGATGATAAGAGGGAAACATCAGACAACGACGGGTCAGAGAGAGAGTGA 1284 43.54 MGCFRCTGSSSKKSENIEQNNPNTFDSKTHKPDDLTPSDKAKVNSSLAVKRDSDVKVVVSKDNQLALDVKKLNLKDEVSEEGESNGRAKTFTFEELAAATGNFRSDCFLGEGGFGKVYKGYLQNEVVAIKQLDRNGLQGIREFVVEVLTLSLADHPNLVKLIGFCAEGDQRLLVYEYMPLGSLENHLHDLRPSAKVIDWNTRMKIAAGAARGLEYLHEKMKPPVIYRDLKCSNILLGEGYHSKLSDFGLAKVGPIGDKTHVSTRVMGTYGYCAPDYAMTGQLTFKSDIYSFGVVLLELITGRKAIDHSKPHSEQNLVAWARPLFRDRKKFSQMVDPMLHGQYPVRGLYQSLAIAAMCVQEQPNMRPVISDVVTALNYLASQKYDPQTQPHQSTQKRPSSLRTERDNDKKERDDDKRETSDNDGSERE 427
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 19511842 19515358 + Lsi02G014120.1 Lsi02g01412 656154
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi02g01412 427 MobiDBLite consensus disorder prediction 7 26 - -
Lsi02g01412 427 Pfam Protein tyrosine and serine/threonine kinase 108 374 IPR001245 GO:0004672|GO:0006468
Lsi02g01412 427 Gene3D Transferase(Phosphotransferase) domain 1 178 404 - -
Lsi02g01412 427 PANTHER OS07G0668900 PROTEIN 1 409 - -
Lsi02g01412 427 MobiDBLite consensus disorder prediction 397 427 - -
Lsi02g01412 427 MobiDBLite consensus disorder prediction 382 396 - -
Lsi02g01412 427 ProSitePatterns Protein kinases ATP-binding region signature. 109 130 IPR017441 GO:0005524
Lsi02g01412 427 PANTHER SERINE/THREONINE-PROTEIN KINASE PBL5-RELATED 1 409 - -
Lsi02g01412 427 SUPERFAMILY Protein kinase-like (PK-like) 85 375 IPR011009 -
Lsi02g01412 427 ProSiteProfiles Protein kinase domain profile. 103 378 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi02g01412 427 MobiDBLite consensus disorder prediction 1 43 - -
Lsi02g01412 427 SMART serkin_6 103 378 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi02g01412 427 ProSitePatterns Serine/Threonine protein kinases active-site signature. 224 236 IPR008271 GO:0004672|GO:0006468
Lsi02g01412 427 CDD STKc_IRAK 109 376 - -
Lsi02g01412 427 Gene3D Phosphorylase Kinase; domain 1 71 177 - -
Lsi02g01412 427 MobiDBLite consensus disorder prediction 382 427 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g01412 Lsi-Chr2:19511842 Lsi03g02064 Lsi-Chr3:31958333 0 dispersed
Lsi04g00833 Lsi-Chr4:8032347 Lsi02g01412 Lsi-Chr2:19511842 9.28E-37 dispersed
Lsi04g00578 Lsi-Chr4:5272562 Lsi02g01412 Lsi-Chr2:19511842 9.92E-29 transposed
Lsi06g00726 Lsi-Chr6:12250023 Lsi02g01412 Lsi-Chr2:19511842 3.14E-91 transposed
Lsi10g01319 Lsi-Chr10:17398309 Lsi02g01412 Lsi-Chr2:19511842 1.85E-174 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
83404 PF00069 Pkinase 2.40E-42 CL0016 Lsi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi02g01412 - - bhj:120083806 788.489