Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi02g01427 ATGTCTCCGAAGTCTCTAATGACGAAGAATAGGTTCATTTGCGAGATATGCAACAAGGGGTTTCAGAGAGACCAGAACTTGCAGCTTCACCGACGAGGGCACAACTTACCGTGGAAGCTCCGACAAAGATCGAGCAAGGAAGTGAGGAAGAAGGTGTATGTGTGTCCGGAGAAGAGCTGTGTGCACCACGACCCGGCGAGGGCGCTCGGGGACCTTACCGGGATCAAGAAGCACTATAGTAGGAAGCATGGTGAGAAGAAGTGGAAGTGTGAGAAGTGCTCCAAGAAATATGCAGTTCAATCAGATTGGAAGGCTCATTCTAAGATATGTGGGACAAAGGAATACAAATGTGACTGTGGGACTCTCTTTTCCAGAAAGGATAGCTTCATTACTCACAGAGCATTTTGTGATGCATTAGCTGAAGAAAACTCAAGAATAAATCATCATCATCATCCAACCTTCATAAACAACAACTTTTCTCCAACTTCTTCTTCACTACTTTTCCAACCAAACTTCCCCGCCGCGGCTACCGCCACCGCCACCGTCTCCGTCGCCGATCAAACCTCCCTCGTCCACAATTTTCCTAACATTATCTCCGAGCACGACGGCGACCACAAGCCTCGTCCGCTGCCACTGTCGTCGCCGCCGCAGCTTCCGCTTTGGCTCGACCCTCCTCCAAACCCTAACCCTTTTTTCTCCGCCGCCACCGCTATCCACAGCTTCTCCGACCACCCTACATTCTTCCCGGAAAATCACCACCCTTTTTTGTCGGAGCCGCTAACGACGACCTCCTCGTATGCGGTGGCGCCCCACATGTCTGCCACCGCGCTCCTCCAAAAAGCAGCCCAAATGGGACCCACCAGAACCCCAGCCGCGCCGCCAATTCTCTTCAACGCAGCCACCACCACCGCGGCGGCATATGGAACGAACAACTCCGCCGCTGCCGCCACCGTCTTATCGGATGGACGTCCGATGATGAAGGCATTAATGGGCGGAGCAAAGGAAGAAATTGGAGGGCAGAATTTGACCAGAGACTTTCTGGGAGTCGGAAATCAGGTGGTGCATCTCACGCCGGTGGGTTCCAATCAATACAGTAATCAGAACCGGCGCCATTAG 1116 52.69 MSPKSLMTKNRFICEICNKGFQRDQNLQLHRRGHNLPWKLRQRSSKEVRKKVYVCPEKSCVHHDPARALGDLTGIKKHYSRKHGEKKWKCEKCSKKYAVQSDWKAHSKICGTKEYKCDCGTLFSRKDSFITHRAFCDALAEENSRINHHHHPTFINNNFSPTSSSLLFQPNFPAAATATATVSVADQTSLVHNFPNIISEHDGDHKPRPLPLSSPPQLPLWLDPPPNPNPFFSAATAIHSFSDHPTFFPENHHPFLSEPLTTTSSYAVAPHMSATALLQKAAQMGPTRTPAAPPILFNAATTTAAAYGTNNSAAAATVLSDGRPMMKALMGGAKEEIGGQNLTRDFLGVGNQVVHLTPVGSNQYSNQNRRH 371
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 19797763 19800034 - Lsi02G014270.1 Lsi02g01427 656169
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi02g01427 371 ProSiteProfiles Zinc finger C2H2 type domain profile. 12 34 IPR013087 -
Lsi02g01427 371 SMART c2h2final6 88 108 IPR013087 -
Lsi02g01427 371 SMART c2h2final6 12 34 IPR013087 -
Lsi02g01427 371 SMART c2h2final6 53 83 IPR013087 -
Lsi02g01427 371 SUPERFAMILY beta-beta-alpha zinc fingers 11 108 IPR036236 -
Lsi02g01427 371 PANTHER PROTEIN INDETERMINATE-DOMAIN 13-RELATED 1 353 - -
Lsi02g01427 371 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 1 353 - -
Lsi02g01427 371 Gene3D Classic Zinc Finger 66 147 - -
Lsi02g01427 371 Pfam Zinc-finger double-stranded RNA-binding 12 34 IPR022755 -
Lsi02g01427 371 ProSitePatterns Zinc finger C2H2 type domain signature. 14 34 IPR013087 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g01427 Lsi-Chr2:19797763 Lsi10g00083 Lsi-Chr10:1365870 2.29E-102 dispersed
Lsi02g01427 Lsi-Chr2:19797763 Lsi02g01428 Lsi-Chr2:19802662 0 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
24829 PF12171 zf-C2H2_jaz 5.10E-05 CL0361 Lsi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi02g01427 K25870 - csv:101212420 578.17