Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi02g01429 ATGGCGGGCGCAGCCGGTGGCAAGTCGCTCGAGCAAACGCCGACGTGGGCTGTTGCCGTTGTTTGTTTCGTTTTACTTCTCATCTCTATTTTCATCGAATATAGCCTCCATCTTATCGGACATTGGCTTAAGAAGAGACATAAACGGGCATTATTTGAAGCACTAGAGAAGATCAAATCAGAGCTTATGTTATTGGGATTCATATCACTGCTTCTAACAGTGGGGCAAGGTCCAATCACAGAGATATGTATCCCACAACATGTAGCTGCCACGTGGCATCCATGTACAAAGGAGAAAGAAATGGAGATGAACAAAGAGATGGAAAAAGCTGTTGAACATTTGGCTACTAATGGCCGGAGACTCCTCCATCTTGCCGGAACTGGTGGAAGTTTCCGGCGGATTTTGGCTGCCGCTGGAGGAGCCGACAAGTGTGCTGCCAAGGGTCAAGTGTCATTTATTTCAGCAGAAGGAATTCATCAACTTCACATTTTCATATTTGTGTTGGCTGTTTTCCATGTTTTGTACTGTGTTCTAACTTATGCTTTGGCTAGAGCAAAGATGAGGAGTTGGAAAACATGGGAAAAAGAGACCAAAACTGCAGAATACCAATTCTCACATGATCCAGAGAGATTTAGGTTTGCAAGAGACACCTCGTTTGGGAGAAGACATTTGAGCTTCTGGACTAAGAATCCTGCCCTAATGTGGATAGTTTGTTTCTTCAGGCAATTTGTAAGATCTGTTCCAAAAGTTGATTACTTGACATTAAGACATGGATTTATAATGGCACATTTAGCACCTCAGAGTCATACACAGTTTGATTTTCAAAAATACATTAATAGATCCCTTGAAGAAGACTTTAAAGTTGTTGTGGGAATCAGCCCACCAATTTGGTTCTTCGCTGTGCTGTTCCTCCTCTCAAACACTCACGGTTGGAGGGCATATCTATGGCTGCCATTCATCCCACTAATAATTTTGCTGCTGATCGGTACAAAATTGCAAGTGATCATAACGAAAATGGCACTAAGAATACAAGAAAGAGGAGAAGTGGTGAAGGGCGTACCAGTGGTGGAGCCTGGCGATGACCTTTTTTGGTTCAATCGCCCTCGCCTTATTCTTTATCTCATCAACTTTGTTCTCTTTCAAAATGCCTTCCAAGTTGCCTTCTTTGCTTGGACTTGGTATGAGTTCGGGTTGAATTCTTGTTTCCATGAGCATATAGAGGATGTGGTGATCAGAATTTCAATGGGGGTGCTAGTACAAATCCTTTGCAGTTATGTTACTCTTCCTCTTTATGCACTGGTCACTCAGATGGGTTCAACAATGAAGCCAACTATATTCAACGAGAGAGTGGCAGCGGCCCTTCGCAATTGGTATCACTCGGCTCGGAAGCACATCAAACACAACCGCGGTTCGATCACTCCAATGTCGAGCCGACCCGCCACCCCAACTCACAACATGTCCCCGGTTCACCTACTCCGTCACTACAGGAGTGAGGTCGATAGCTTCCACACCTCGCCGAGAAGGTCACCATTCGAGACCGACCGTTGGGACAACGATTCACCATCACCGTCCCGTCATGCTGATGGTTCGTCTTCGTCACAACCCTACGTCGAGATGGGAGGCTATGACAAAGATCCGATCGAATTGGGTTCAACTCAAGTTGATTTTGTTCAATCATCTCAACCCCGCACTCAACATGAGATTCAAATTGGCGGCCCTAAAGACTTTTCCTTTAATAGAGTTGAGTGA 1749 44.94 MAGAAGGKSLEQTPTWAVAVVCFVLLLISIFIEYSLHLIGHWLKKRHKRALFEALEKIKSELMLLGFISLLLTVGQGPITEICIPQHVAATWHPCTKEKEMEMNKEMEKAVEHLATNGRRLLHLAGTGGSFRRILAAAGGADKCAAKGQVSFISAEGIHQLHIFIFVLAVFHVLYCVLTYALARAKMRSWKTWEKETKTAEYQFSHDPERFRFARDTSFGRRHLSFWTKNPALMWIVCFFRQFVRSVPKVDYLTLRHGFIMAHLAPQSHTQFDFQKYINRSLEEDFKVVVGISPPIWFFAVLFLLSNTHGWRAYLWLPFIPLIILLLIGTKLQVIITKMALRIQERGEVVKGVPVVEPGDDLFWFNRPRLILYLINFVLFQNAFQVAFFAWTWYEFGLNSCFHEHIEDVVIRISMGVLVQILCSYVTLPLYALVTQMGSTMKPTIFNERVAAALRNWYHSARKHIKHNRGSITPMSSRPATPTHNMSPVHLLRHYRSEVDSFHTSPRRSPFETDRWDNDSPSPSRHADGSSSSQPYVEMGGYDKDPIELGSTQVDFVQSSQPRTQHEIQIGGPKDFSFNRVE 582
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 19828608 19841227 - Lsi02G014290.1 Lsi02g01429 656171

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi02g01429 582 MobiDBLite consensus disorder prediction 523 537 - -
Lsi02g01429 582 MobiDBLite consensus disorder prediction 502 582 - -
Lsi02g01429 582 Pfam Mlo family 8 495 IPR004326 GO:0006952|GO:0016021
Lsi02g01429 582 MobiDBLite consensus disorder prediction 552 567 - -
Lsi02g01429 582 MobiDBLite consensus disorder prediction 502 522 - -
Lsi02g01429 582 PANTHER MLO-LIKE PROTEIN 1 1 579 IPR004326 GO:0006952|GO:0016021
Lsi02g01429 582 Coils Coil 97 117 - -
Lsi02g01429 582 PANTHER MLO-LIKE PROTEIN 1 579 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi02g01429 K08472 MLO; mlo protein - csv:101217225 1090.49
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g01429 Lsi-Chr2:19828608 Lsi08g00776 Lsi-Chr8:16142106 7.03E-122 dispersed
Lsi02g01429 Lsi-Chr2:19828608 Lsi02g01432 Lsi-Chr2:19938652 1.11E-173 proximal
Lsi01g00280 Lsi-Chr1:2491688 Lsi02g01429 Lsi-Chr2:19828608 2.56E-83 transposed
Lsi04g00059 Lsi-Chr4:739689 Lsi02g01429 Lsi-Chr2:19828608 0 transposed
Lsi07g01039 Lsi-Chr7:15744283 Lsi02g01429 Lsi-Chr2:19828608 1.75E-117 transposed
Lsi09g01887 Lsi-Chr9:27665414 Lsi02g01429 Lsi-Chr2:19828608 3.33E-111 transposed
Lsi10g00757 Lsi-Chr10:10378636 Lsi02g01429 Lsi-Chr2:19828608 4.37E-95 transposed
Lsi10g01281 Lsi-Chr10:17031805 Lsi02g01429 Lsi-Chr2:19828608 0 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lsi04g01324 . 5 577 MLO family AT5G53760 62.1 4.0e-188 654.8
Lsi02g01541 . 3 606 MLO family AT5G53760 55.5 4.9e-178 621.3
Lsi02g01432 . 10 470 MLO family AT3G45290 54.0 2.4e-136 482.6
Lsi04g01324 . 1 558 MLO family AT1G26700 60.8 4.6e-181 631.3
Lsi02g01541 . 3 606 MLO family AT1G26700 54.8 3.0e-172 602.1
Lsi02g01429 . 8 510 MLO family AT2G39200 66.0 6.0e-192 667.5
Lsi04g00059 . 7 529 MLO family AT2G39200 65.0 4.3e-190 661.4
Lsi10g01281 . 8 483 MLO family AT2G39200 53.2 3.5e-147 518.8
Lsi02g01429 . 1 416 MLO family AT1G61560 66.1 7.7e-157 550.4
Lsi04g00059 . 7 413 MLO family AT1G61560 64.7 1.3e-151 533.1
Lsi10g01281 . 1 336 MLO family AT1G61560 59.2 5.8e-120 427.9
Lsi01g00525 . 10 461 MLO family AT2G17430 54.7 8.6e-140 494.2
Lsi02g01429 . 5 458 MLO family AT2G17430 51.1 1.9e-123 439.9
Lsi07g01039 . 28 451 MLO family AT2G17430 50.7 4.0e-113 405.6
Lsi01g00525 . 28 538 MLO family AT2G17480 56.0 1.5e-161 566.6
Lsi02g01429 . 8 463 MLO family AT2G17480 52.4 7.7e-126 448.0
Lsi08g00776 . 9 436 MLO family AT2G17480 50.8 2.3e-114 409.8
Lsi08g00776 . 12 369 MLO family AT1G42560 56.7 2.6e-114 409.1
Lsi01g00525 . 28 353 MLO family AT1G42560 52.6 1.1e-101 367.1
Lsi09g01887 . 6 413 MLO family AT4G24250 50.2 2.7e-98 355.9
Lsi01g00525 . 8 354 MLO family AT5G65970 60.9 1.5e-124 443.4
Lsi08g00776 . 8 367 MLO family AT5G65970 54.5 3.8e-107 385.6
Lsi02g01429 . 2 381 MLO family AT5G65970 51.1 9.7e-103 370.9
Lsi10g01281 . 2 337 MLO family AT5G65970 50.4 1.6e-89 327.0
Lsi07g01039 . 27 349 MLO family AT5G65970 50.5 1.3e-86 317.4
Lsi02g01429 . 6 488 MLO family AT2G33670 50.1 9.1e-128 454.1
Lsi01g00525 . 18 441 MLO family AT2G33670 53.4 2.0e-127 453.0
Lsi04g00059 . 64 530 MLO family AT1G11310 63.7 2.0e-167 585.9
Lsi02g01429 . 63 506 MLO family AT1G11310 64.4 1.0e-163 573.5
Lsi10g01281 . 63 454 MLO family AT1G11310 51.9 2.6e-122 436.0
Lsi09g01887 . 5 489 MLO family AT2G44110 54.9 6.4e-142 501.1
Lsi09g01887 . 1 496 MLO family AT4G02600 66.8 1.3e-185 646.4
Lsi09g01887 . 1 496 MLO family AT4G02600 66.8 1.3e-185 646.4
Lsi04g00059 . 64 530 MLO family AT1G11310 63.7 2.0e-167 585.9
Lsi02g01429 . 63 506 MLO family AT1G11310 64.4 1.0e-163 573.5
Lsi10g01281 . 63 454 MLO family AT1G11310 51.9 2.6e-122 436.0
Lsi02g01432 . 10 470 MLO family AT3G45290 54.0 2.4e-136 482.6
Lsi02g01429 . 6 488 MLO family AT2G33670 50.1 9.1e-128 454.1
Lsi01g00525 . 18 441 MLO family AT2G33670 53.4 2.0e-127 453.0
Lsi02g01429 . 1 416 MLO family AT1G61560 66.1 7.7e-157 550.4
Lsi04g00059 . 7 413 MLO family AT1G61560 64.7 1.3e-151 533.1
Lsi10g01281 . 1 336 MLO family AT1G61560 59.2 5.8e-120 427.9
Lsi01g00525 . 10 461 MLO family AT2G17430 54.7 8.6e-140 494.2
Lsi02g01429 . 5 458 MLO family AT2G17430 51.1 1.9e-123 439.9
Lsi07g01039 . 28 451 MLO family AT2G17430 50.7 4.0e-113 405.6
Lsi01g00525 . 28 538 MLO family AT2G17480 56.0 1.5e-161 566.6
Lsi02g01429 . 8 463 MLO family AT2G17480 52.4 7.7e-126 448.0
Lsi08g00776 . 9 436 MLO family AT2G17480 50.8 2.3e-114 409.8
Lsi08g00776 . 12 369 MLO family AT1G42560 56.7 2.6e-114 409.1
Lsi01g00525 . 28 353 MLO family AT1G42560 52.6 1.1e-101 367.1
Lsi01g00525 . 8 354 MLO family AT5G65970 60.9 1.5e-124 443.4
Lsi08g00776 . 8 367 MLO family AT5G65970 54.5 3.8e-107 385.6
Lsi02g01429 . 2 381 MLO family AT5G65970 51.1 9.7e-103 370.9
Lsi10g01281 . 2 337 MLO family AT5G65970 50.4 1.6e-89 327.0
Lsi07g01039 . 27 349 MLO family AT5G65970 50.5 1.3e-86 317.4
Lsi04g01324 . 5 577 MLO family AT5G53760 62.1 4.0e-188 654.8
Lsi02g01541 . 3 606 MLO family AT5G53760 55.5 4.9e-178 621.3
Lsi02g01429 . 8 510 MLO family AT2G39200 66.0 6.0e-192 667.5
Lsi04g00059 . 7 529 MLO family AT2G39200 65.0 4.3e-190 661.4
Lsi10g01281 . 8 483 MLO family AT2G39200 53.2 3.5e-147 518.8
Lsi09g01887 . 6 413 MLO family AT4G24250 50.2 2.7e-98 355.9
Lsi04g01324 . 1 558 MLO family AT1G26700 60.8 4.6e-181 631.3
Lsi02g01541 . 3 606 MLO family AT1G26700 54.8 3.0e-172 602.1
Lsi09g01887 . 5 489 MLO family AT2G44110 54.9 6.4e-142 501.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001805 3 2 2 3 3 2 3 2 2 2 2 2 3 2 2 3 2 2 3 2 2 2 1 2 2 2 2 2 2 4 68
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi02g01429 Lsi_Chr02 FPKM 28.77117 29.682898 21.825409 19.082777 23.686735 27.482113 24.2651 28.222158 27.868063 29.331347