Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lsi02g01441 | ATGGAGAAAAGTGAAGCAAATACGGCGGCGACCGCTGCTAGTCCGTGTGCGGCTTGCAAAATTCTCCGGCGGAGATGCCGAGAGAATTGCGAATTGGGGCCGTATTTTCCTCCAACGGAACCTCTCAAATTCACTATTGCTCATAAGGTCTTTGGTGCTAGCAACATCATCAAATTGCTTCAGGATCTTCCTAAGTCGCAAAGAGCTGATGCAGTGAACAGTATGGTATATGAGGCAAGTGCAAGAATAAGAGATCCGGTTTATGGATGTGCGGGCTCAATTTTCCAACTCCAAAAAGAAATAAATGACCTAAAAGCAGATTTAGCTAAAGCTCAAGCAGAGGTTCTCAAAATGCAATGTCAACAAGCCAATTTGATGACTCTAATTTGCAAGGAATTGTCTCAAATGCCACAACCACCAATAATAATGTATGATCATCAATCACTTAATGACAATTACAACATTGCTAGCCCTCAAACTTATCAAACCTATTCATACTTATTTGAGGACAGTAATATTTTGGAGCCTCTTTGGACTTAG | 540 | 41.3 | MEKSEANTAATAASPCAACKILRRRCRENCELGPYFPPTEPLKFTIAHKVFGASNIIKLLQDLPKSQRADAVNSMVYEASARIRDPVYGCAGSIFQLQKEINDLKADLAKAQAEVLKMQCQQANLMTLICKELSQMPQPPIIMYDHQSLNDNYNIASPQTYQTYSYLFEDSNILEPLWT | 179 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
2 | 20075036 | 20078291 | - | Lsi02G014410.1 | Lsi02g01441 | 656183 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lsi02g01441 | 179 | PANTHER | LOB DOMAIN-CONTAINING PROTEIN 4-RELATED | 12 | 178 | - | - | |
Lsi02g01441 | 179 | Pfam | Lateral organ boundaries (LOB) domain | 15 | 112 | IPR004883 | - | |
Lsi02g01441 | 179 | Coils | Coil | 94 | 121 | - | - | |
Lsi02g01441 | 179 | PANTHER | LOB DOMAIN-CONTAINING PROTEIN 1 | 12 | 178 | - | - | |
Lsi02g01441 | 179 | ProSiteProfiles | LOB domain profile. | 14 | 115 | IPR004883 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lsi02g01441 | Lsi-Chr2:20075036 | Lsi04g00812 | Lsi-Chr4:7712280 | 4.84E-68 | dispersed | |
Lsi02g01441 | Lsi-Chr2:20075036 | Lsi02g01442 | Lsi-Chr2:20109670 | 2.73E-87 | tandem |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
24831 | PF03195 | LOB | 9.30E-39 | No_clan | Lsi | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lsi02g01441 | - | - | csv:101222021 | 291.967 |