Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi02g01441 ATGGAGAAAAGTGAAGCAAATACGGCGGCGACCGCTGCTAGTCCGTGTGCGGCTTGCAAAATTCTCCGGCGGAGATGCCGAGAGAATTGCGAATTGGGGCCGTATTTTCCTCCAACGGAACCTCTCAAATTCACTATTGCTCATAAGGTCTTTGGTGCTAGCAACATCATCAAATTGCTTCAGGATCTTCCTAAGTCGCAAAGAGCTGATGCAGTGAACAGTATGGTATATGAGGCAAGTGCAAGAATAAGAGATCCGGTTTATGGATGTGCGGGCTCAATTTTCCAACTCCAAAAAGAAATAAATGACCTAAAAGCAGATTTAGCTAAAGCTCAAGCAGAGGTTCTCAAAATGCAATGTCAACAAGCCAATTTGATGACTCTAATTTGCAAGGAATTGTCTCAAATGCCACAACCACCAATAATAATGTATGATCATCAATCACTTAATGACAATTACAACATTGCTAGCCCTCAAACTTATCAAACCTATTCATACTTATTTGAGGACAGTAATATTTTGGAGCCTCTTTGGACTTAG 540 41.3 MEKSEANTAATAASPCAACKILRRRCRENCELGPYFPPTEPLKFTIAHKVFGASNIIKLLQDLPKSQRADAVNSMVYEASARIRDPVYGCAGSIFQLQKEINDLKADLAKAQAEVLKMQCQQANLMTLICKELSQMPQPPIIMYDHQSLNDNYNIASPQTYQTYSYLFEDSNILEPLWT 179
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 20075036 20078291 - Lsi02G014410.1 Lsi02g01441 656183
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi02g01441 179 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 12 178 - -
Lsi02g01441 179 Pfam Lateral organ boundaries (LOB) domain 15 112 IPR004883 -
Lsi02g01441 179 Coils Coil 94 121 - -
Lsi02g01441 179 PANTHER LOB DOMAIN-CONTAINING PROTEIN 1 12 178 - -
Lsi02g01441 179 ProSiteProfiles LOB domain profile. 14 115 IPR004883 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g01441 Lsi-Chr2:20075036 Lsi04g00812 Lsi-Chr4:7712280 4.84E-68 dispersed
Lsi02g01441 Lsi-Chr2:20075036 Lsi02g01442 Lsi-Chr2:20109670 2.73E-87 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
24831 PF03195 LOB 9.30E-39 No_clan Lsi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi02g01441 - - csv:101222021 291.967