Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi02g01442 ATGGAGTGCAGCGAGGCAAAATCCAGCCAAACTTCAACTATCCTCCTTTCTCAGTCGCCTTCGTCGTCTCCTTCACCGCCGCCGAGTGTTCAGGTCGGCGTGGTGGTCAGTCCGTGTGCGGCGTGCAAGATTCTGAGGCGGAGATGCGCAGAGAAATGCGTATTGGCGCCCTATTTTCCTCCCTCCGATCCTCTCAAATTCACCATTGCTCACCGTGTCTTCGGTGCTAGCAACATCATCAAATTGCTTCAGGAATCAAACGAAAGCAGCCCAACTGATCTTCCTGATTCACAAAGGGCTGATGCAGTGAGTAGTTTAGTGTATGAAGCAAGTGCAAGAATTAGAGATCCAGTTTATGGGTGTGCAGGGGCCATTTGCCAGCTCCAGAAACAGATAAACGAATTGCAAGCAGAGCTAGCCAAGACACAAGCTGAGCTTGTCAATATCCACTGCCACCAAGCCAATTTGGTGGCACTGATTTGCAAGGAATTAGCCCAAACACCGCCACCAGTGTCTCCGCTGCCGGACCACCGCACATTTGACAACAATTTCAACATTGCCACTCCTCAGAACCACCAAGGCTACACATCTTTGTTTGAGGATAGCAATATTTGGGACCCTCTTTGGACCTGA 633 50.24 MECSEAKSSQTSTILLSQSPSSSPSPPPSVQVGVVVSPCAACKILRRRCAEKCVLAPYFPPSDPLKFTIAHRVFGASNIIKLLQESNESSPTDLPDSQRADAVSSLVYEASARIRDPVYGCAGAICQLQKQINELQAELAKTQAELVNIHCHQANLVALICKELAQTPPPVSPLPDHRTFDNNFNIATPQNHQGYTSLFEDSNIWDPLWT 210
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 20109670 20110752 + Lsi02G014420.1 Lsi02g01442 656184
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi02g01442 210 Coils Coil 125 152 - -
Lsi02g01442 210 MobiDBLite consensus disorder prediction 1 20 - -
Lsi02g01442 210 PANTHER LOB DOMAIN-CONTAINING PROTEIN 1 19 209 - -
Lsi02g01442 210 ProSiteProfiles LOB domain profile. 37 146 IPR004883 -
Lsi02g01442 210 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 19 209 - -
Lsi02g01442 210 Pfam Lateral organ boundaries (LOB) domain 38 143 IPR004883 -
Lsi02g01442 210 MobiDBLite consensus disorder prediction 1 29 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g01442 Lsi-Chr2:20109670 Lsi10g01295 Lsi-Chr10:17172135 5.37E-76 dispersed
Lsi02g01441 Lsi-Chr2:20075036 Lsi02g01442 Lsi-Chr2:20109670 2.73E-87 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
24832 PF03195 LOB 4.50E-38 No_clan Lsi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi02g01442 - - csv:101222262 310.071