Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi02g01475 ATGCCTTCAATGGGGATCATAATCCTCCAATTGGGTCTTTTTTTTATGTTCTCGTCTGTTAATGCTGATTATGGAGGTTGGATCAACGCTCATGCCACTTTCTATGGTGGAAGTGATGCATCTGGGACAATGGGAGGGGCTTGTGGATATGGGAATTTGTACAGCCAAGGCTATGGGACTAACACTGCGGCGCTGAGCACTGCTCTGTTTGACAATGGCCTCAGCTGTGGCGCTTGCTTTGAGCTACGCTGTGTCAACGATCCTCAATGGTGTCTTCCAGGCACCATTGTTGTCACTGCCACTAATTTCTGCCCTCCTGGCGGCTGGTGCGACCCTCCCAACCATCATTTTGACCTCTCTCAGCCTATCTTCCAACACATTGCTCAATATCGCGCCGGAATTGTCCCCGTCGCTTACCGCAGGGTAAGGTGTAGGAGAAGTGGGGGAATAAGATTCACAATCAACGGGCATTCATATTTCAATTTGGTTTTGGTGACAAACGTGGGCGGGGCCGGAGATGTGCATGCGGTGGCGATTAAGGGTTCGAAAACAAGATGGCAACCTATGTCTAGAAATTGGGGGCAAAATTGGCAATCCAACTCTTATCTGAACGGACAGAGTCTGTCGTTTTTGGTCACAGCCAGCGACGGACGGAAAGTTCTTTCCTATAACGTGGCTCCCTCCGGCTGGTCCTTTGGACAGACTTATGTCGGCGGGCAATTTCGTTATTAA 732 49.73 MPSMGIIILQLGLFFMFSSVNADYGGWINAHATFYGGSDASGTMGGACGYGNLYSQGYGTNTAALSTALFDNGLSCGACFELRCVNDPQWCLPGTIVVTATNFCPPGGWCDPPNHHFDLSQPIFQHIAQYRAGIVPVAYRRVRCRRSGGIRFTINGHSYFNLVLVTNVGGAGDVHAVAIKGSKTRWQPMSRNWGQNWQSNSYLNGQSLSFLVTASDGRKVLSYNVAPSGWSFGQTYVGGQFRY 243
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 20497709 20498918 + Lsi02G014750.1 Lsi02g01475 656217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi02g01475 243 SUPERFAMILY Barwin-like endoglucanases 14 167 IPR036908 -
Lsi02g01475 243 PRINTS Expansin signature 124 137 IPR002963 GO:0009664
Lsi02g01475 243 PRINTS Expansin signature 96 106 IPR002963 GO:0009664
Lsi02g01475 243 PRINTS Expansin signature 84 95 IPR002963 GO:0009664
Lsi02g01475 243 PRINTS Expansin signature 57 71 IPR002963 GO:0009664
Lsi02g01475 243 PRINTS Expansin signature 107 124 IPR002963 GO:0009664
Lsi02g01475 243 PRINTS Expansin signature 148 160 IPR002963 GO:0009664
Lsi02g01475 243 PRINTS Expansin signature 224 240 IPR002963 GO:0009664
Lsi02g01475 243 PRINTS Expansin signature 195 216 IPR002963 GO:0009664
Lsi02g01475 243 PRINTS Expansin signature 160 181 IPR002963 GO:0009664
Lsi02g01475 243 SUPERFAMILY PHL pollen allergen 146 237 IPR036749 -
Lsi02g01475 243 Gene3D - 15 145 IPR036908 -
Lsi02g01475 243 SMART dpbb_1 62 139 IPR007112 -
Lsi02g01475 243 PRINTS Expansin/Lol pI family signature 186 200 IPR007118 GO:0005576
Lsi02g01475 243 PRINTS Expansin/Lol pI family signature 132 148 IPR007118 GO:0005576
Lsi02g01475 243 PRINTS Expansin/Lol pI family signature 224 238 IPR007118 GO:0005576
Lsi02g01475 243 PRINTS Expansin/Lol pI family signature 26 41 IPR007118 GO:0005576
Lsi02g01475 243 PRINTS Expansin/Lol pI family signature 44 62 IPR007118 GO:0005576
Lsi02g01475 243 PRINTS Expansin/Lol pI family signature 66 84 IPR007118 GO:0005576
Lsi02g01475 243 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 45 149 IPR007112 -
Lsi02g01475 243 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 159 238 IPR007117 -
Lsi02g01475 243 PANTHER EXPANSIN-A15 13 242 IPR002963 GO:0009664
Lsi02g01475 243 Pfam Expansin C-terminal domain 150 227 IPR007117 -
Lsi02g01475 243 Pfam Lytic transglycolase 62 139 IPR009009 -
Lsi02g01475 243 PANTHER EXPANSIN-A5 13 242 - -
Lsi02g01475 243 Gene3D - 149 241 IPR036749 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g01475 Lsi-Chr2:20497709 Lsi11g00969 Lsi-Chr11:15332481 9.65E-132 dispersed
Lsi02g00081 Lsi-Chr2:694390 Lsi02g01475 Lsi-Chr2:20497709 2.04E-76 wgd
Lsi02g01475 Lsi-Chr2:20497709 Lsi04g00406 Lsi-Chr4:3973635 9.05E-141 wgd
Lsi02g01475 Lsi-Chr2:20497709 Lsi06g01458 Lsi-Chr6:25126453 4.24E-121 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi02g01475 K20628 - csv:101220358 482.256