Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi02g01484 ATGTGTGTGTTTGAGAGAGCCATGGATTTAGCCCCAGCTCCCATCACTACTAGTAGTAATAACACCAAATCTCCCGACGCTGACTCCGATACTCCGACAAAGATCCCGCCGTCTTCTTCCCTCAAATCCCTCCCCTTCACCAACGGTGTTCTCAAGCGCCACCACCACCTCCGTCAACCGTCCCTCATTGTTTCTTATAAAGAATGTCTCAAAAATCACGCCGCCAGTTTAGGAGCTCACGCCTTGGATGGATGTGGCGAATTTATGCCTTCCCCTTCTGCCACTCCCACTGATCCCACATCGCTTAAATGCGCCGCTTGCGGCTGTCATCGGAATTTCCACCGCCGTGACCCGGAAGATCCAATCTCCACTTTAGCCATTCATACGGCGCCCACTCATGTCATCGAGTATCAGCCTCACCACCGTCATCACCCTCCACCGCCGCCGCTTGCCGGGAACCGAAGCCCGAATTCGGCGTCTCCTCCGCCGATCTCGTCATCGTACTACCCATCTGCGCCGCATATGCTATTGGCGCTTTCGGCCGGGTTGTCGGGTCGTCCTCCGGAAAATAACACCCAGGGGAATAATTCGGTGCTGACGGTGAGTCCGAACACCCGGAAACGGTTTCGGACGAAATTCAGTAACGAGCAGAAGGAAAAAATGCTGGATTTCGCGGAACGAGTGGGATGGAAAATGCAAAAGAGAGATGAGGATTTGGTTCGAGATTTTTGCAATCAAGTTGGAGTTGAAAGAGGGGTTCTCAAAGTATGGATGCATAACAACAAGAACACCATGGGAAAAAAGCCCGACTCCAATGGCACCACCGTTGCCGACGCCGCCACCGCCGCCGTCAACAACAACGAAGATGAACCAGATGGCGCTTTACATATGCATGTTGGCTCAAATGGGTCATCTTCTTCTTCTTGA 927 52.54 MCVFERAMDLAPAPITTSSNNTKSPDADSDTPTKIPPSSSLKSLPFTNGVLKRHHHLRQPSLIVSYKECLKNHAASLGAHALDGCGEFMPSPSATPTDPTSLKCAACGCHRNFHRRDPEDPISTLAIHTAPTHVIEYQPHHRHHPPPPPLAGNRSPNSASPPPISSSYYPSAPHMLLALSAGLSGRPPENNTQGNNSVLTVSPNTRKRFRTKFSNEQKEKMLDFAERVGWKMQKRDEDLVRDFCNQVGVERGVLKVWMHNNKNTMGKKPDSNGTTVADAATAAVNNNEDEPDGALHMHVGSNGSSSSS 308
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 20585357 20586283 + Lsi02G014840.1 Lsi02g01484 656226
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi02g01484 308 Gene3D - 192 267 - -
Lsi02g01484 308 TIGRFAM homeo_ZF_HD: homeobox domain, ZF-HD class 206 263 IPR006455 -
Lsi02g01484 308 SUPERFAMILY Homeodomain-like 194 267 IPR009057 -
Lsi02g01484 308 Pfam ZF-HD protein dimerisation region 64 118 IPR006456 -
Lsi02g01484 308 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 66 117 IPR006456 -
Lsi02g01484 308 MobiDBLite consensus disorder prediction 185 205 - -
Lsi02g01484 308 PANTHER HOMEOBOX DOMAIN, ZF-HD CLASS PROTEIN 15 289 - -
Lsi02g01484 308 MobiDBLite consensus disorder prediction 286 308 - -
Lsi02g01484 308 MobiDBLite consensus disorder prediction 181 205 - -
Lsi02g01484 308 MobiDBLite consensus disorder prediction 138 167 - -
Lsi02g01484 308 TIGRFAM ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain 66 117 IPR006456 -
Lsi02g01484 308 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 15 289 - -
Lsi02g01484 308 MobiDBLite consensus disorder prediction 13 41 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g01484 Lsi-Chr2:20585357 Lsi08g01003 Lsi-Chr8:18507811 6.46E-53 dispersed
Lsi02g01513 Lsi-Chr2:21022402 Lsi02g01484 Lsi-Chr2:20585357 2.05E-48 transposed
Lsi02g01484 Lsi-Chr2:20585357 Lsi03g01478 Lsi-Chr3:25706181 3.92E-105 wgd
Lsi02g01484 Lsi-Chr2:20585357 Lsi04g00427 Lsi-Chr4:4081885 1.54E-59 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
24837 PF04770 ZF-HD_dimer 1.00E-28 No_clan Lsi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi02g01484 - - csv:101213548 481.485