Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi02g01484 ATGTGTGTGTTTGAGAGAGCCATGGATTTAGCCCCAGCTCCCATCACTACTAGTAGTAATAACACCAAATCTCCCGACGCTGACTCCGATACTCCGACAAAGATCCCGCCGTCTTCTTCCCTCAAATCCCTCCCCTTCACCAACGGTGTTCTCAAGCGCCACCACCACCTCCGTCAACCGTCCCTCATTGTTTCTTATAAAGAATGTCTCAAAAATCACGCCGCCAGTTTAGGAGCTCACGCCTTGGATGGATGTGGCGAATTTATGCCTTCCCCTTCTGCCACTCCCACTGATCCCACATCGCTTAAATGCGCCGCTTGCGGCTGTCATCGGAATTTCCACCGCCGTGACCCGGAAGATCCAATCTCCACTTTAGCCATTCATACGGCGCCCACTCATGTCATCGAGTATCAGCCTCACCACCGTCATCACCCTCCACCGCCGCCGCTTGCCGGGAACCGAAGCCCGAATTCGGCGTCTCCTCCGCCGATCTCGTCATCGTACTACCCATCTGCGCCGCATATGCTATTGGCGCTTTCGGCCGGGTTGTCGGGTCGTCCTCCGGAAAATAACACCCAGGGGAATAATTCGGTGCTGACGGTGAGTCCGAACACCCGGAAACGGTTTCGGACGAAATTCAGTAACGAGCAGAAGGAAAAAATGCTGGATTTCGCGGAACGAGTGGGATGGAAAATGCAAAAGAGAGATGAGGATTTGGTTCGAGATTTTTGCAATCAAGTTGGAGTTGAAAGAGGGGTTCTCAAAGTATGGATGCATAACAACAAGAACACCATGGGAAAAAAGCCCGACTCCAATGGCACCACCGTTGCCGACGCCGCCACCGCCGCCGTCAACAACAACGAAGATGAACCAGATGGCGCTTTACATATGCATGTTGGCTCAAATGGGTCATCTTCTTCTTCTTGA 927 52.54 MCVFERAMDLAPAPITTSSNNTKSPDADSDTPTKIPPSSSLKSLPFTNGVLKRHHHLRQPSLIVSYKECLKNHAASLGAHALDGCGEFMPSPSATPTDPTSLKCAACGCHRNFHRRDPEDPISTLAIHTAPTHVIEYQPHHRHHPPPPPLAGNRSPNSASPPPISSSYYPSAPHMLLALSAGLSGRPPENNTQGNNSVLTVSPNTRKRFRTKFSNEQKEKMLDFAERVGWKMQKRDEDLVRDFCNQVGVERGVLKVWMHNNKNTMGKKPDSNGTTVADAATAAVNNNEDEPDGALHMHVGSNGSSSSS 308
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 20585357 20586283 + Lsi02G014840.1 Lsi02g01484 656226

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi02g01484 308 Gene3D - 192 267 - -
Lsi02g01484 308 TIGRFAM homeo_ZF_HD: homeobox domain, ZF-HD class 206 263 IPR006455 -
Lsi02g01484 308 SUPERFAMILY Homeodomain-like 194 267 IPR009057 -
Lsi02g01484 308 Pfam ZF-HD protein dimerisation region 64 118 IPR006456 -
Lsi02g01484 308 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 66 117 IPR006456 -
Lsi02g01484 308 MobiDBLite consensus disorder prediction 185 205 - -
Lsi02g01484 308 PANTHER HOMEOBOX DOMAIN, ZF-HD CLASS PROTEIN 15 289 - -
Lsi02g01484 308 MobiDBLite consensus disorder prediction 286 308 - -
Lsi02g01484 308 MobiDBLite consensus disorder prediction 181 205 - -
Lsi02g01484 308 MobiDBLite consensus disorder prediction 138 167 - -
Lsi02g01484 308 TIGRFAM ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain 66 117 IPR006456 -
Lsi02g01484 308 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 15 289 - -
Lsi02g01484 308 MobiDBLite consensus disorder prediction 13 41 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi02g01484 - - - csv:101213548 481.485
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g01484 Lsi-Chr2:20585357 Lsi08g01003 Lsi-Chr8:18507811 6.46E-53 dispersed
Lsi02g01513 Lsi-Chr2:21022402 Lsi02g01484 Lsi-Chr2:20585357 2.05E-48 transposed
Lsi02g01484 Lsi-Chr2:20585357 Lsi03g01478 Lsi-Chr3:25706181 3.92E-105 wgd
Lsi02g01484 Lsi-Chr2:20585357 Lsi04g00427 Lsi-Chr4:4081885 1.54E-59 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lsi08g01003 . 4 241 ZF-HD Transcription Factor Family AT4G24660 52.3 1.8e-54 209.5
Lsi05g00825 . 53 194 ZF-HD Transcription Factor Family AT4G24660 53.9 2.3e-41 166.0
Lsi11g00101 . 79 288 ZF-HD Transcription Factor Family AT2G02540 53.0 8.6e-52 201.1
Lsi11g00101 . 76 292 ZF-HD Transcription Factor Family AT1G14440 54.5 6.4e-55 211.5
Lsi01g00671 . 129 335 ZF-HD Transcription Factor Family AT2G18350 52.9 2.3e-50 196.1
Lsi02g01484 . 13 262 ZF-HD Transcription Factor Family AT5G15210 53.8 2.9e-51 199.1
Lsi03g01478 . 22 270 ZF-HD Transcription Factor Family AT5G15210 54.8 2.0e-49 193.0
Lsi03g01478 . 22 274 ZF-HD Transcription Factor Family AT3G28920 63.6 3.0e-60 229.2
Lsi02g01484 . 6 264 ZF-HD Transcription Factor Family AT3G28920 58.5 3.9e-60 228.8
Lsi02g01484 . 31 268 ZF-HD Transcription Factor Family AT5G39760 58.3 3.2e-52 202.6
Lsi03g01478 . 30 273 ZF-HD Transcription Factor Family AT5G39760 57.4 1.6e-48 190.3
Lsi04g00427 . 1 185 ZF-HD Transcription Factor Family AT1G69600 51.7 3.5e-48 188.7
Lsi02g01484 . 64 265 ZF-HD Transcription Factor Family AT1G69600 50.5 9.4e-46 180.6
Lsi11g00101 . 79 288 ZF-HD Transcription Factor Family AT2G02540 53.0 8.6e-52 201.1
Lsi08g01003 . 4 241 ZF-HD Transcription Factor Family AT4G24660 52.3 1.8e-54 209.5
Lsi05g00825 . 53 194 ZF-HD Transcription Factor Family AT4G24660 53.9 2.3e-41 166.0
Lsi02g01484 . 31 268 ZF-HD Transcription Factor Family AT5G39760 58.3 3.2e-52 202.6
Lsi03g01478 . 30 273 ZF-HD Transcription Factor Family AT5G39760 57.4 1.6e-48 190.3
Lsi01g00671 . 129 335 ZF-HD Transcription Factor Family AT2G18350 52.9 2.3e-50 196.1
Lsi04g00427 . 1 185 ZF-HD Transcription Factor Family AT1G69600 51.7 3.5e-48 188.7
Lsi02g01484 . 64 265 ZF-HD Transcription Factor Family AT1G69600 50.5 9.4e-46 180.6
Lsi02g01484 . 13 262 ZF-HD Transcription Factor Family AT5G15210 53.8 2.9e-51 199.1
Lsi03g01478 . 22 270 ZF-HD Transcription Factor Family AT5G15210 54.8 2.0e-49 193.0
Lsi11g00101 . 76 292 ZF-HD Transcription Factor Family AT1G14440 54.5 6.4e-55 211.5
Lsi03g01478 . 22 274 ZF-HD Transcription Factor Family AT3G28920 63.6 3.0e-60 229.2
Lsi02g01484 . 6 264 ZF-HD Transcription Factor Family AT3G28920 58.5 3.9e-60 228.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001346 3 2 3 3 3 2 4 2 2 2 2 2 3 2 2 3 2 4 4 2 2 2 3 2 2 3 2 3 2 1 74
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
24837 PF04770 ZF-HD_dimer 1.00E-28 No_clan Lsi TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi02g01484 Lsi_Chr02 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0