Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi02g01485 ATGAGGAAGCGTCAAGTTGTGCTTAGAAGATCAGAAGAACCCTCAAGGGAGACTGTGGCTTCCTCTTTCACAGTAAGGAGTGTAAGATATGGGGAGTGCCAAAAGAACCACGCCGCCGGGGTCGGAGGGTACGCTGTTGACGGGTGTCGAGAATTCATGGCGAGTGGCGACGAAGGGACGACCGCTGCACTGACTTGCGCCGCCTGCGGTTGCCACCGGAATTTTCATAGAAGGCAAGTTGGAACTGAGGTAGTTTGTGATTGCTCTTCATCACCCTCAAATGGAACTTAA 291 52.58 MRKRQVVLRRSEEPSRETVASSFTVRSVRYGECQKNHAAGVGGYAVDGCREFMASGDEGTTAALTCAACGCHRNFHRRQVGTEVVCDCSSSPSNGT 96
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 20598316 20598606 + Lsi02G014850.1 Lsi02g01485 656227

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi02g01485 96 Pfam ZF-HD protein dimerisation region 28 79 IPR006456 -
Lsi02g01485 96 PANTHER BNAA09G02420D PROTEIN 1 95 - -
Lsi02g01485 96 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 1 95 - -
Lsi02g01485 96 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 30 79 IPR006456 -
Lsi02g01485 96 TIGRFAM ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain 29 79 IPR006456 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi02g01485 - - - csv:101213061 182.956
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g01485 Lsi-Chr2:20598316 Lsi08g01003 Lsi-Chr8:18507811 2.19E-22 dispersed
Lsi02g00072 Lsi-Chr2:631833 Lsi02g01485 Lsi-Chr2:20598316 6.42E-37 wgd
Lsi02g01485 Lsi-Chr2:20598316 Lsi06g01468 Lsi-Chr6:25190290 7.57E-32 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lsi02g01485 . 1 95 Zinc finger-homeobox gene family AT3G28917 79.8 3.0e-38 154.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000730 3 3 2 3 4 3 2 3 3 2 3 3 4 3 3 5 3 6 4 3 3 3 3 1 3 3 3 6 3 1 94
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
24838 PF04770 ZF-HD_dimer 3.30E-30 No_clan Lsi TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi02g01485 Lsi_Chr02 FPKM 1.24359 1.096229 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0