Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi02g01485 ATGAGGAAGCGTCAAGTTGTGCTTAGAAGATCAGAAGAACCCTCAAGGGAGACTGTGGCTTCCTCTTTCACAGTAAGGAGTGTAAGATATGGGGAGTGCCAAAAGAACCACGCCGCCGGGGTCGGAGGGTACGCTGTTGACGGGTGTCGAGAATTCATGGCGAGTGGCGACGAAGGGACGACCGCTGCACTGACTTGCGCCGCCTGCGGTTGCCACCGGAATTTTCATAGAAGGCAAGTTGGAACTGAGGTAGTTTGTGATTGCTCTTCATCACCCTCAAATGGAACTTAA 291 52.58 MRKRQVVLRRSEEPSRETVASSFTVRSVRYGECQKNHAAGVGGYAVDGCREFMASGDEGTTAALTCAACGCHRNFHRRQVGTEVVCDCSSSPSNGT 96
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 20598316 20598606 + Lsi02G014850.1 Lsi02g01485 656227
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi02g01485 96 Pfam ZF-HD protein dimerisation region 28 79 IPR006456 -
Lsi02g01485 96 PANTHER BNAA09G02420D PROTEIN 1 95 - -
Lsi02g01485 96 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 1 95 - -
Lsi02g01485 96 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 30 79 IPR006456 -
Lsi02g01485 96 TIGRFAM ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain 29 79 IPR006456 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g01485 Lsi-Chr2:20598316 Lsi08g01003 Lsi-Chr8:18507811 2.19E-22 dispersed
Lsi02g00072 Lsi-Chr2:631833 Lsi02g01485 Lsi-Chr2:20598316 6.42E-37 wgd
Lsi02g01485 Lsi-Chr2:20598316 Lsi06g01468 Lsi-Chr6:25190290 7.57E-32 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
24838 PF04770 ZF-HD_dimer 3.30E-30 No_clan Lsi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi02g01485 - - csv:101213061 182.956