Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi02g01491 ATGGCGGAACCAGTAGCAGAGCCTAAGTCATTACCCGAACCCGAAAAGAAGAAGGAACAGAGCCTTCCTTTTCACCAACTCTTCTCTTTTGCAGACAAATATGACTGGTTTCTCATGATCCTCGGTAGTTTCGGCGCCATTGTCCACGGCTCTTCCATGCCTGTTTTCTTCCTTCTTTTCGGCGAAATGGTTAACGGCTTCGGCAAAAACCAATCCAATTTTCACAAAATGACAGCAGAAGTCTCTAAGTATGCTCTGTATTTTGTCTACTTGGGTCTTATTGTCTGTTTCTCATCATACGCCGAGATCGCATGTTGGATGTACACTGGGGAGAGACAAGTGAGCACATTGAGAAAGAAGTATTTAGAAGCTGTTTTGAAACAAGATGTTGGATTCTTTGACACTGATGCCAGAACAGGGGATGTTGTTTTCAGCGTTTCAACAGACACTCTTCTTGTACAAGATGCAATCAGCGAGAAGGTGGGCAACTTCATTCACTATCTTTCGACGTTTTTGGCTGGATTGGTGGTGGGTTTTGTGTCAGCATGGAGACTAGCTCTTCTGAGTATAGCAGTAATTCCAGGAATCGCTTTCGCTGGAGGTTTATATGCTTATACTCTCACTGGACTTACTTCAAAGAGCCGAGAATCCTATGCCAACGCTGGCATAATCGCCGAACAGGCGATTGCTCAAGTTCGAACTGTTTACTCTTATGTTGGAGAAAGCAAAGCTTTGAATTCCTATTCAGATTCAATTCAAAACACATTGAAAATTGGATACAAGGCAGGAATGGCTAAGGGGTTGGGTCTAGGTTGTACCTATGGCATTGCTTGTATGTCTTGGGCACTTGTCTTCTGGTATGCTGGAGTCTTCATCCGAAACGGCCAATCCGATGGCGGCAAAGCCTTCACTGCTATATTCTCCGCCATCGTTGGTGGCATGAGCTTGGGGCAGTCATTTTCCAATTTGGGAGCATTCAGCAAAGGGAAAGCAGCAGGGTACAAATTGATGGAGATTATCAAACAGAGGCCTACAATTATTCAAGACCCATTAGAAGGGAAGTGTTTGGCTGAAGTTAATGGCAACATTGAGTTCAAAGATGTTACCTTTAGCTATCCGTCCAGACCGGACGTGATGATCTTTAGGGATTTCTCCATTTTCTTCCCAGCCGGGAAAACGGTGGCTGTCGTCGGCGGTAGCGGTTCCGGGAAAAGCACTGTTGTCTCTCTCATTGAAAGATTCTACGATCCCAATCAAGGGCAGGTTTTACTTGACAATGTGGATATCAAGACACTGCAATTGAAATGGCTGCGTGATCAAATTGGTTTAGTGAATCAGGAACCGGCTCTGTTTGCAACCACCATATACGAAAACATTCTCTACGGCAAACCTGATGCGACGACGGCGGAGGTGGAAGCTGCCGCGGCTGCAGCAAACGCTCATAGCTTCATCGCATTGCTTCCCAATGGCTACGACACCCAAGTGGGCGAAAGAGGATTACAACTCTCCGGTGGACAAAAACAGAGGATTGCCATAGCCAGAGCAATGTTGAAGAACCCCAAAATCCTTCTCCTCGATGAAGCCACCAGCGCGCTCGATGCAGGCTCTGAGAGCATAGTTCAAGAAGCTTTAGACCGTTTAATGGTCGGAAGAACAACGGTGGTGGTCGCACATCGATTATCAACCATAAGAAATGTTGATTCAATTGCAGTTATTCAACAGGGGCAGGTCGTCGAAACAGGAACTCACGAAGAATTAATAGCGAAATCCGGTGCTTATTCCTCGTTAATTCGATTCCAAGAAATGGTTCGAAACAGAGAATTCTCAAACCCATCGACCCGTCGAACACGATCTTCACGGCTGAGCCATTCGTTATCCACAAAATCGTTAAGCCTCCGCTCCGGCAGCCTCAGGAATTTGAGTTATTCGTATAGCACCGGCGCCGACGGGAGAATCGAAATGGTTTCTAACGCCGAAACTGACCGAAAAAACCCAGCCCCAGATGGCTATTTCATTCGTCTTCTTAAACTAAACGGCCCCGAATGGCCGTATTCGATAATGGGGGCTGTTGGGTCTGTTCTCTCTGGTTTCATCAGTCCAACATTTGCCATTGTTATGAGTAACATGATCGAGGTCTTCTATTACAGAAATTCATCCGCCATGGAAAGGAAAATCAAGGAATTCGTATTCATCTACATTGGAATTGGGGTTTACGCAGTGGTAGCTTATCTAATTCAGCATTATTTCTTTACAATCATGGGTGAAAATCTCACTACTAGAGTCAGAAGAATGATGCTCGCAGCGATTTTGAGGAATGAAGTGGGATGGTTCGATGAAGAAGAACACAACTCAAGTTTAGTAGCAGCAAGGTTGGCTACTGATGCAGCTGATGTAAAATCCGCCATTGCTGAAAGAATATCAGTGATACTACAAAATATGACTTCACTCTTCACTTCTTTCATAGTTGCATTCATTGTTGAATGGAGAGTTTCTCTTCTCATCCTTGCAGCCTTCCCTCTACTGGTTCTTGCCAACATGGCTCAGCAACTTTCTTTGAAAGGATTTGCTGGGGATACTGCTAAGGCCCACGCAAAGACAAGTATGATTGCAGGGGAAGGTGTGAGCAATATCAGAACAGTGGCTGCCTTCAATGCTCAGGACAAGATCCTATCTCTGTTCCGCCAGGAGCTTTGTGTCCCACAACGACAGAGTCTCCGCCGGAGCCAAACGGCGGGGGTCCTTTTCGGTATCTCGCAGCTAGCTCTATATGCCTCTGAAGCTCTAGTTCTATGGTATGGTGTCCATTTGGTCAGCAATGGTGGATCAACATTCTCCAAAGTGATCAAAGTCTTTGTTGTCTTGGTTGTTACTGCCAATTCTGTGGCCGAGACTGTTAGTCTTGCTCCTGAGATCATTAGGGGCGGCGAATCAATCGGTTCTGTTTTCTCGATTCTCGATCGCTCGACAAGGATTGACCCTGATGATCCTGAGGCAGAGACTGTTGAGACGCTTCGTGGGGAAATTGAACTCCGACATGTCGATTTCGCATACCCATCTCGACCTGATGTCATGGTGTTTAAGGATCTCAATTTGAGGATCAGGGCAGGTCAGAGTCAGGCATTGGTTGGAGCCAGTGGATCAGGGAAGAGTTCAGTGATTGCCTTGATTGAGAGATTCTACGATCCGCTTGCCGGGAAAGTTATGATCGACGGGAAGGACATTCGACGCCTAAACTTGCAATCCTTGAGGCTGAAAATTGGGTTGGTACAGCAAGAGCCAGCCTTATTTGCAGCCAGCATTTTTGACAACATTGCATATGGAAAAGATGGAGCAACAGAGGCAGAAGTAATAGAGGCAGCAAGAGCAGCCAATGTGCATGGCTTTGTAAGTGGACTGCCTGATGGCTACAAGACACCAGTTGGGGAAAGAGGCGTTCAACTCTCTGGTGGCCAAAAACAACGCATAGCTATTGCCAGAGCCGTTCTCAAGGACCCCACAATCCTCCTCCTCGACGAAGCCACCAGTGCCCTCGACGCTGAGTCCGAGTGCGTGCTGCAAGAAGCTCTCGAAAGGCTCATGAGGGGCCGAACCACAGTAGTCGTGGCACATCGCCTGTCCACAATCAGGGGTCTGGACTGCATTGGCGTGGTCCAAGACGGGCGCATTGTCGAGCAAGGCAGCCACAACGAGCTGCTAAGCCGAGCCGAGGGAGCTTACTCAAGGCTCTTGCAGCTGCAACACCAACACATATGA 3753 47.16 MAEPVAEPKSLPEPEKKKEQSLPFHQLFSFADKYDWFLMILGSFGAIVHGSSMPVFFLLFGEMVNGFGKNQSNFHKMTAEVSKYALYFVYLGLIVCFSSYAEIACWMYTGERQVSTLRKKYLEAVLKQDVGFFDTDARTGDVVFSVSTDTLLVQDAISEKVGNFIHYLSTFLAGLVVGFVSAWRLALLSIAVIPGIAFAGGLYAYTLTGLTSKSRESYANAGIIAEQAIAQVRTVYSYVGESKALNSYSDSIQNTLKIGYKAGMAKGLGLGCTYGIACMSWALVFWYAGVFIRNGQSDGGKAFTAIFSAIVGGMSLGQSFSNLGAFSKGKAAGYKLMEIIKQRPTIIQDPLEGKCLAEVNGNIEFKDVTFSYPSRPDVMIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNQGQVLLDNVDIKTLQLKWLRDQIGLVNQEPALFATTIYENILYGKPDATTAEVEAAAAAANAHSFIALLPNGYDTQVGERGLQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMVGRTTVVVAHRLSTIRNVDSIAVIQQGQVVETGTHEELIAKSGAYSSLIRFQEMVRNREFSNPSTRRTRSSRLSHSLSTKSLSLRSGSLRNLSYSYSTGADGRIEMVSNAETDRKNPAPDGYFIRLLKLNGPEWPYSIMGAVGSVLSGFISPTFAIVMSNMIEVFYYRNSSAMERKIKEFVFIYIGIGVYAVVAYLIQHYFFTIMGENLTTRVRRMMLAAILRNEVGWFDEEEHNSSLVAARLATDAADVKSAIAERISVILQNMTSLFTSFIVAFIVEWRVSLLILAAFPLLVLANMAQQLSLKGFAGDTAKAHAKTSMIAGEGVSNIRTVAAFNAQDKILSLFRQELCVPQRQSLRRSQTAGVLFGISQLALYASEALVLWYGVHLVSNGGSTFSKVIKVFVVLVVTANSVAETVSLAPEIIRGGESIGSVFSILDRSTRIDPDDPEAETVETLRGEIELRHVDFAYPSRPDVMVFKDLNLRIRAGQSQALVGASGSGKSSVIALIERFYDPLAGKVMIDGKDIRRLNLQSLRLKIGLVQQEPALFAASIFDNIAYGKDGATEAEVIEAARAANVHGFVSGLPDGYKTPVGERGVQLSGGQKQRIAIARAVLKDPTILLLDEATSALDAESECVLQEALERLMRGRTTVVVAHRLSTIRGLDCIGVVQDGRIVEQGSHNELLSRAEGAYSRLLQLQHQHI 1250
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 20679307 20686179 + Lsi02G014910.1 Lsi02g01491 656233
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi02g01491 1250 CDD ABC_MTABC3_MDL1_MDL2 363 600 - -
Lsi02g01491 1250 SMART AAA_5 390 582 IPR003593 -
Lsi02g01491 1250 SMART AAA_5 1035 1221 IPR003593 -
Lsi02g01491 1250 CDD ABC_MTABC3_MDL1_MDL2 1008 1246 - -
Lsi02g01491 1250 Gene3D ABC transporter type 1, transmembrane domain 86 982 IPR036640 GO:0005524|GO:0016021
Lsi02g01491 1250 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 998 1246 IPR027417 -
Lsi02g01491 1250 Pfam ABC transporter 1027 1175 IPR003439 GO:0005524
Lsi02g01491 1250 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 356 600 IPR027417 -
Lsi02g01491 1250 CDD ABC_6TM_Pgp_ABCB1_D2_like 675 991 - -
Lsi02g01491 1250 CDD ABC_6TM_Pgp_ABCB1_D1_like 39 336 - -
Lsi02g01491 1250 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1010 1244 IPR003439 GO:0005524
Lsi02g01491 1250 Gene3D - 361 624 IPR027417 -
Lsi02g01491 1250 PANTHER ABC TRANSPORTER TAP-LIKE, P-LOOP CONTAINING NUCLEOSIDE TRIPHOSPHATE HYDROLASE-RELATED 15 1248 - -
Lsi02g01491 1250 SUPERFAMILY ABC transporter transmembrane region 27 344 IPR036640 GO:0005524|GO:0016021
Lsi02g01491 1250 Pfam ABC transporter transmembrane region 686 957 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Lsi02g01491 1250 Pfam ABC transporter transmembrane region 39 313 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Lsi02g01491 1250 SUPERFAMILY ABC transporter transmembrane region 673 987 IPR036640 GO:0005524|GO:0016021
Lsi02g01491 1250 ProSitePatterns ABC transporters family signature. 1147 1161 IPR017871 GO:0005524
Lsi02g01491 1250 Gene3D - 998 1250 IPR027417 -
Lsi02g01491 1250 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 363 599 IPR003439 GO:0005524
Lsi02g01491 1250 ProSitePatterns ABC transporters family signature. 502 516 IPR017871 GO:0005524
Lsi02g01491 1250 PANTHER ATP-BINDING CASSETTE SUB-FAMILY B 15 1248 IPR039421 -
Lsi02g01491 1250 Pfam ABC transporter 383 530 IPR003439 GO:0005524
Lsi02g01491 1250 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 40 328 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Lsi02g01491 1250 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 686 973 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g00130 Lsi-Chr2:1049488 Lsi02g01491 Lsi-Chr2:20679307 5.58E-99 dispersed
Lsi02g01491 Lsi-Chr2:20679307 Lsi03g02007 Lsi-Chr3:31464738 0 dispersed
Lsi02g01673 Lsi-Chr2:22511988 Lsi02g01491 Lsi-Chr2:20679307 8.49E-84 dispersed
Lsi10g00191 Lsi-Chr10:3188657 Lsi02g01491 Lsi-Chr2:20679307 2.21E-13 dispersed
Lsi02g01491 Lsi-Chr2:20679307 Lsi04g01761 Lsi-Chr4:24854240 3.48E-125 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi02g01491 K05658 - csv:101212585 2265.73