Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lsi02g01495 | ATGGCTTCCCCTCACCATTCCCATAGCTTCATCTTCCAATCCCGCCCCGCCGATCACCACGAATACGTCCCCTCCGCTTCCTTCAACGCCATCCCCTCCTGCCCTCCTCACCTTTACTTTCACGATGGAGTGGTTCCAGTGATGATGAAGAGATCGATGTCGTTTTCAGGAGTCGAAAACGGGTGCGAAGAAGTGAATGGAGACGAGGGGTTATCGGACGATGGATTGGCGTTGGGAGAGAAGAAGAAGCGATTAAATTTAGAGCAAGTGAAGGCTTTGGAGAAGAGCTTTGAGTTAGGGAATAAGCTTGAGCCAGAGAGGAAAATGCAGCTAGCCAAAGCTTTAGGGTTGCAGCCAAGACAGATTGCTATTTGGTTTCAGAATAGAAGGGCCAGATGGAAAACCAAGCAGTTGGAGAGAGATTATGAAGTGTTGAAGAAACAGTTTGAAGCTCTAAAAGCTGACAATGATGTACTTCAAGCTCAAAATACCAAACTCCATGCAGAGTTATTAGCATTAAAAACCAAAGACTCCGGCGAGGCGGCGGGGGGCGGCGGCGCCACCATGAACCTAAAGAAAGAAAATGAACGCTGTTGGAGCAGCGACAACAGTTGCGACATCAACCTCGACATCTCAAAGACACGAGCACCAATAAACGGCGGCGGAGGTAGAGCATGTTCTCAACCAGAAATAATCAAAGATCTTTTCCCATCGGCGGCATTCCGATCCGCCGCCATAACGCAGCTGCTTCAACACGGGTCGTCCAGATCAACGGTGGACCATCCTCAAGTGATTCAAGAAGAAAGCTTCTCTCAAATGTTCAATGGCATTGAAGAACAACAACAAACTGCAGCAGCAGCTGGGTTTTGGCCATGGAGTTCAGATCAAAATTCCCATTTTCATTAA | 906 | 48.12 | MASPHHSHSFIFQSRPADHHEYVPSASFNAIPSCPPHLYFHDGVVPVMMKRSMSFSGVENGCEEVNGDEGLSDDGLALGEKKKRLNLEQVKALEKSFELGNKLEPERKMQLAKALGLQPRQIAIWFQNRRARWKTKQLERDYEVLKKQFEALKADNDVLQAQNTKLHAELLALKTKDSGEAAGGGGATMNLKKENERCWSSDNSCDINLDISKTRAPINGGGGRACSQPEIIKDLFPSAAFRSAAITQLLQHGSSRSTVDHPQVIQEESFSQMFNGIEEQQQTAAAAGFWPWSSDQNSHFH | 301 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
2 | 20804999 | 20807769 | + | Lsi02G014950.1 | Lsi02g01495 | 656237 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lsi02g01495 | 301 | Coils | Coil | 128 | 169 | - | - | |
Lsi02g01495 | 301 | Pfam | Homeodomain | 81 | 134 | IPR001356 | GO:0003677 | |
Lsi02g01495 | 301 | Pfam | Homeobox associated leucine zipper | 136 | 176 | IPR003106 | GO:0006355|GO:0043565 | |
Lsi02g01495 | 301 | Gene3D | - | 77 | 144 | - | - | |
Lsi02g01495 | 301 | SUPERFAMILY | Homeodomain-like | 79 | 138 | IPR009057 | - | |
Lsi02g01495 | 301 | CDD | homeodomain | 81 | 137 | IPR001356 | GO:0003677 | |
Lsi02g01495 | 301 | PRINTS | Lambda-repressor HTH signature | 116 | 132 | IPR000047 | GO:0003677 | |
Lsi02g01495 | 301 | PRINTS | Lambda-repressor HTH signature | 107 | 116 | IPR000047 | GO:0003677 | |
Lsi02g01495 | 301 | ProSitePatterns | 'Homeobox' domain signature. | 111 | 134 | IPR017970 | GO:0000981|GO:0006355 | |
Lsi02g01495 | 301 | ProSiteProfiles | 'Homeobox' domain profile. | 80 | 136 | IPR001356 | GO:0003677 | |
Lsi02g01495 | 301 | SMART | HOX_1 | 79 | 140 | IPR001356 | GO:0003677 | |
Lsi02g01495 | 301 | PANTHER | HOMEOBOX-LEUCINE ZIPPER PROTEIN | 1 | 301 | IPR045224 | GO:0003700 | |
Lsi02g01495 | 301 | PANTHER | HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT7 | 1 | 301 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lsi02g01495 | Lsi-Chr2:20804999 | Lsi03g01401 | Lsi-Chr3:24962142 | 1.13E-39 | dispersed | |
Lsi02g00316 | Lsi-Chr2:2714297 | Lsi02g01495 | Lsi-Chr2:20804999 | 2.74E-39 | wgd | |
Lsi02g01495 | Lsi-Chr2:20804999 | Lsi04g00442 | Lsi-Chr4:4239452 | 1.37E-81 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
24841 | PF00046 | Homeodomain | 2.80E-15 | CL0123 | Lsi | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lsi02g01495 | K09338 | - | csv:101212093 | 572.007 |