Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi02g01495 ATGGCTTCCCCTCACCATTCCCATAGCTTCATCTTCCAATCCCGCCCCGCCGATCACCACGAATACGTCCCCTCCGCTTCCTTCAACGCCATCCCCTCCTGCCCTCCTCACCTTTACTTTCACGATGGAGTGGTTCCAGTGATGATGAAGAGATCGATGTCGTTTTCAGGAGTCGAAAACGGGTGCGAAGAAGTGAATGGAGACGAGGGGTTATCGGACGATGGATTGGCGTTGGGAGAGAAGAAGAAGCGATTAAATTTAGAGCAAGTGAAGGCTTTGGAGAAGAGCTTTGAGTTAGGGAATAAGCTTGAGCCAGAGAGGAAAATGCAGCTAGCCAAAGCTTTAGGGTTGCAGCCAAGACAGATTGCTATTTGGTTTCAGAATAGAAGGGCCAGATGGAAAACCAAGCAGTTGGAGAGAGATTATGAAGTGTTGAAGAAACAGTTTGAAGCTCTAAAAGCTGACAATGATGTACTTCAAGCTCAAAATACCAAACTCCATGCAGAGTTATTAGCATTAAAAACCAAAGACTCCGGCGAGGCGGCGGGGGGCGGCGGCGCCACCATGAACCTAAAGAAAGAAAATGAACGCTGTTGGAGCAGCGACAACAGTTGCGACATCAACCTCGACATCTCAAAGACACGAGCACCAATAAACGGCGGCGGAGGTAGAGCATGTTCTCAACCAGAAATAATCAAAGATCTTTTCCCATCGGCGGCATTCCGATCCGCCGCCATAACGCAGCTGCTTCAACACGGGTCGTCCAGATCAACGGTGGACCATCCTCAAGTGATTCAAGAAGAAAGCTTCTCTCAAATGTTCAATGGCATTGAAGAACAACAACAAACTGCAGCAGCAGCTGGGTTTTGGCCATGGAGTTCAGATCAAAATTCCCATTTTCATTAA 906 48.12 MASPHHSHSFIFQSRPADHHEYVPSASFNAIPSCPPHLYFHDGVVPVMMKRSMSFSGVENGCEEVNGDEGLSDDGLALGEKKKRLNLEQVKALEKSFELGNKLEPERKMQLAKALGLQPRQIAIWFQNRRARWKTKQLERDYEVLKKQFEALKADNDVLQAQNTKLHAELLALKTKDSGEAAGGGGATMNLKKENERCWSSDNSCDINLDISKTRAPINGGGGRACSQPEIIKDLFPSAAFRSAAITQLLQHGSSRSTVDHPQVIQEESFSQMFNGIEEQQQTAAAAGFWPWSSDQNSHFH 301
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 20804999 20807769 + Lsi02G014950.1 Lsi02g01495 656237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi02g01495 301 Coils Coil 128 169 - -
Lsi02g01495 301 Pfam Homeodomain 81 134 IPR001356 GO:0003677
Lsi02g01495 301 Pfam Homeobox associated leucine zipper 136 176 IPR003106 GO:0006355|GO:0043565
Lsi02g01495 301 Gene3D - 77 144 - -
Lsi02g01495 301 SUPERFAMILY Homeodomain-like 79 138 IPR009057 -
Lsi02g01495 301 CDD homeodomain 81 137 IPR001356 GO:0003677
Lsi02g01495 301 PRINTS Lambda-repressor HTH signature 116 132 IPR000047 GO:0003677
Lsi02g01495 301 PRINTS Lambda-repressor HTH signature 107 116 IPR000047 GO:0003677
Lsi02g01495 301 ProSitePatterns 'Homeobox' domain signature. 111 134 IPR017970 GO:0000981|GO:0006355
Lsi02g01495 301 ProSiteProfiles 'Homeobox' domain profile. 80 136 IPR001356 GO:0003677
Lsi02g01495 301 SMART HOX_1 79 140 IPR001356 GO:0003677
Lsi02g01495 301 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 1 301 IPR045224 GO:0003700
Lsi02g01495 301 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT7 1 301 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g01495 Lsi-Chr2:20804999 Lsi03g01401 Lsi-Chr3:24962142 1.13E-39 dispersed
Lsi02g00316 Lsi-Chr2:2714297 Lsi02g01495 Lsi-Chr2:20804999 2.74E-39 wgd
Lsi02g01495 Lsi-Chr2:20804999 Lsi04g00442 Lsi-Chr4:4239452 1.37E-81 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
24841 PF00046 Homeodomain 2.80E-15 CL0123 Lsi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi02g01495 K09338 - csv:101212093 572.007