Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi02g01502 ATGGGTGACAAGGATGAAGTTTTGGAAGCTGTTGTGAAGGAAGCTGTTGATTTGGAGAACGTTCCACTTGAAGAGGTTTTTCAGACGTTGAGATGTAATACAAATGGTTTGACAACAGAGGCGGCTCATGAGAGGTTGGCCATTTTTGGACACAACAAGCTTGAAGAAAAGAAGGAGAGTAAGGTTTTGAAGTTCTTGGGATTTATGTGGAACCCTCTCTCATGGGTCATGGAAGCTGCAGCTATAATGGCTATTGCTCTGGCTAATGGAGGAGGAAAACCTCCAGATTGGCAGGATTTTGTTGGGATCATAACCTTGTTAATTATCAATTCAACTATTAGTTTTATAGAGGAGAATAATGCTGGAAATGCTGCGGCTGCTCTCATGGCCCGTCTTGCTCCGAAAGCTAAGTCTGCTCTCACAGGCGAGTCACTTCCTGTGACTAAAGGCCCTGGGGACAGTGTCTATTCAGGTTCAACATGCAAACAGGGAGAAATTGAAGCAGTTGTTATTGCTACTGGTGTTCATACATTCTTTGGCAAAGCTGCTCATCTTGTAGACTCCACGAATCAAGTGGGTCACTTCCAAAAGGCACGAGTAGGCATTCAAGAGGTTCACTTCCTTCCATTCAACCCAACTGACAAGCGAACTGCCCTGACATACATTGATGCTGATGGTAAAATGCATCGAGTCAGCAAAGGTGCTCCAGAGCAAATCTTGAACCTTGCACACAACAAATCAGAGATAGAAAGAAGAGTTCATGCTGTGATCGATAAGTTCGCAGAACGAGGATTGCGCTCTCTTGCAGTGGCATACCAAGAAGTTCCAGATGGAAGAAAGGAGAGTCATGGAGGGCCATGGCAATTCATTGGCCTAATGCCTCTGTTTGACCCACCTAGACATGATAGTGCAGAGACAATTAGGAGGGCTTTGAATCTTGGTGTAAATGTTAAAATGATCACAGGTGATCAACTGGCTATAGGAAAGGAAACAGGACGTCGGCTCGGTATGGGAACAAATATGTACCCTTCATCTGCATTATTAGGACAGAACAAAGATGAATCAATTTCTGGATTGCCTGTTGATGACTTAATTGAGAAGGCTGATGGATTTGCCGGTGTATTTCCTGAGCACAAATATGAGATTGTGAAACGTTTACAAGCTCGGAAACATATATGTGGAATGACTGGAGATGGTGTTAATGATGCCCCTGCTCTTAAAAAGGCCGATATTGGCATAGCAGTTGCAGATGCAACCGATGCAGCTCGTAGTGCTTCTGACATTGTTCTTACAGAGCCTGGTCTTAGTGTTATTATAAGCGCTGTTCTAACCAGCAGAGCCATCTTCCAGAGGATGAAAAATTACACAATTTATGCAGTTTCAATTACAATTCGTATCGTGCTTGGATTCATGTTGCTGGCACTTATATATCAATTTGACTTCCCACCTTTCATGGTTCTAATCATTGCTATTCTTAATGATGGTACCATAATGACAATATCAAAGGATAGAGTGAAACCATCTCCTCTGCCAGATAGCTGGAAACTGGCAGAGATTTTTGGCACTGGAATTATACTTGGAGGTTATTTGGCTATGATGACCGTTATTTTCTTCTGGGCAGCTTACAGAACTGACTTCTTTCCTCGTACATTTGGGGTTTCTAGCCTTCAAAAGAAGGACGAGGATGATTTCAGAAAGCTAGCTTCAGCAATATACCTGCAAGTGAGTACAATTAGTCAGGCCCTCATCTTTGTGACACGATCTCGGAGTTGGTCGTTTGTGGAACGTCCTGGCCTGTTATTGGTTGCAGCTTTTGTTATTGCTCAGCTAATTGCTACAGTGATTGCTGTCTATGCAAACTGGAGTTTTGCTGCAATAGAAGGAATTGGCTGGGGCTGGGCTGGTGTGGTTTGGCTTTACAACCTCATCTTTTATTTCCCGCTTGATATAATCAAGTTTGCAATCAGATATGCCATTAGTGGTAGGGCATGGGACCTTGTCATTGAACAAAGGATTGCCTTTACAAGGAAGAAAGATTTTGGGAAGGAAGAGCGTGAGCTCAAATGGGCACATGCACAAAGGACACTTCATGGGCTGCAGCCACCTGAGTCTAAAATGTTCTCCGAGCGCACAACTTATACAGAACTCAATCAAATGGCAGAGGAAGCAAAACGACGAGCTGAAATTGCAAGGTAA 2196 43.4 MGDKDEVLEAVVKEAVDLENVPLEEVFQTLRCNTNGLTTEAAHERLAIFGHNKLEEKKESKVLKFLGFMWNPLSWVMEAAAIMAIALANGGGKPPDWQDFVGIITLLIINSTISFIEENNAGNAAAALMARLAPKAKSALTGESLPVTKGPGDSVYSGSTCKQGEIEAVVIATGVHTFFGKAAHLVDSTNQVGHFQKARVGIQEVHFLPFNPTDKRTALTYIDADGKMHRVSKGAPEQILNLAHNKSEIERRVHAVIDKFAERGLRSLAVAYQEVPDGRKESHGGPWQFIGLMPLFDPPRHDSAETIRRALNLGVNVKMITGDQLAIGKETGRRLGMGTNMYPSSALLGQNKDESISGLPVDDLIEKADGFAGVFPEHKYEIVKRLQARKHICGMTGDGVNDAPALKKADIGIAVADATDAARSASDIVLTEPGLSVIISAVLTSRAIFQRMKNYTIYAVSITIRIVLGFMLLALIYQFDFPPFMVLIIAILNDGTIMTISKDRVKPSPLPDSWKLAEIFGTGIILGGYLAMMTVIFFWAAYRTDFFPRTFGVSSLQKKDEDDFRKLASAIYLQVSTISQALIFVTRSRSWSFVERPGLLLVAAFVIAQLIATVIAVYANWSFAAIEGIGWGWAGVVWLYNLIFYFPLDIIKFAIRYAISGRAWDLVIEQRIAFTRKKDFGKEERELKWAHAQRTLHGLQPPESKMFSERTTYTELNQMAEEAKRRAEIAR 731
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 20847413 20853447 - Lsi02G015020.1 Lsi02g01502 656244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi02g01502 731 SUPERFAMILY Calcium ATPase, transmembrane domain M 17 658 IPR023298 -
Lsi02g01502 731 Gene3D - 711 731 - -
Lsi02g01502 731 PANTHER CALCIUM-TRANSPORTING ATPASE 137 197 - -
Lsi02g01502 731 SUPERFAMILY HAD-like 288 442 IPR036412 -
Lsi02g01502 731 Pfam haloacid dehalogenase-like hydrolase 226 410 - -
Lsi02g01502 731 SUPERFAMILY Calcium ATPase, transduction domain A 137 186 IPR008250 -
Lsi02g01502 731 Pfam Cation transporter/ATPase, N-terminus 20 83 IPR004014 -
Lsi02g01502 731 Gene3D - 68 143 - -
Lsi02g01502 731 Gene3D - 398 658 - -
Lsi02g01502 731 PANTHER CALCIUM-TRANSPORTING ATPASE 3 137 - -
Lsi02g01502 731 Pfam E1-E2 ATPase 137 196 - -
Lsi02g01502 731 Gene3D - 162 296 IPR023299 GO:0000166
Lsi02g01502 731 PRINTS H+-transporting ATPase (proton pump) signature 253 271 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Lsi02g01502 731 PRINTS H+-transporting ATPase (proton pump) signature 427 452 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Lsi02g01502 731 PRINTS H+-transporting ATPase (proton pump) signature 396 412 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Lsi02g01502 731 PRINTS H+-transporting ATPase (proton pump) signature 572 593 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Lsi02g01502 731 PRINTS H+-transporting ATPase (proton pump) signature 368 384 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Lsi02g01502 731 PANTHER PLASMA MEMBRANE ATPASE 3 137 - -
Lsi02g01502 731 PANTHER PLASMA MEMBRANE ATPASE 137 197 - -
Lsi02g01502 731 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 371 479 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Lsi02g01502 731 SMART Cation_ATPase_N_a_2 17 89 IPR004014 -
Lsi02g01502 731 PANTHER CALCIUM-TRANSPORTING ATPASE 197 731 - -
Lsi02g01502 731 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 193 302 IPR023299 GO:0000166
Lsi02g01502 731 PANTHER PLASMA MEMBRANE ATPASE 197 731 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g01502 Lsi-Chr2:20847413 Lsi07g00437 Lsi-Chr7:4655089 0 dispersed
Lsi02g00322 Lsi-Chr2:2742661 Lsi02g01502 Lsi-Chr2:20847413 0 wgd
Lsi02g01502 Lsi-Chr2:20847413 Lsi06g01491 Lsi-Chr6:25366643 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi02g01502 K01535 - csv:101211115 998.808