Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi02g01517 ATGGTTCCAGAAGACGATATAAGGTGCCTTCGAGGGGTTAAGAATGCGCTCGTTGATCCTCTCGGAAGGCTAAGTTCATGGGATTTCAAGAACACATCCGTCGGTCATCTCTGCAACAAATTCGTTGGTCTCTCCTGCTGGAACGACCGTGAGAATCGCATTCTCAGCCTCGAGCTCAAAGATATGAAGCTCTCCGGTTCGATTTCTGAAGACTTGCAGTACTGTGTAAGCCTGCAGAAACTGGATCTATCCGGTAATAGCTTTTCCGGCGCGATCCCGCCGCATATTTGTGAGTGGCTTCCGTATTTGGTTAGCATGGATTTGTCGAACAATCAGTTTTCCGGCCCTATTCCGGCTGATCTCGCTAGATGTTCTTATCTGAATTCGTTGATTTTGTCTGATAATGAGCTTTCCGGTACAATACCAGTTGAGCTCACGAGTTTGGGTAGGCTTAACAAATTTTCCGTTGCGAACAATCAACTCACTGGTACGGTTCCTTCATTTTTTGATAAATTTGGGAAGGAGGACTTTGATGGGAACAGTGACTTATGTGGAGGGCCTATTGGATCTAGTTGTGGTGGGTTGAGCAAGAAGAATCTTGCGATTATTATAGCTGCTGGCGTGTTTGGTGCTGCGGCTTCTCTGTTGTTAGGTTTTGGGTTGTGGTGGTGGTATCATTCTAGAATGAACATGAAGAGGAGAAGGGGATATGGGGATGGGATTAATGGGGATTGGGCTGGTAGATTGAGAGCCTATAAGCTTGTTCAAGTTTCCTTGTTTCAAAAGCCTCTTGTGAAAGTTAAGTTGGCTGATTTGATGGCTGCTACTAACAATTTCAACTCTGAAAACATCATAGTTTCTTCTAGAACTGGGACTACTTATAGAGCTGTTCTTCCAGATGGCTCTGTGCTTGCTATAAAGCGGCTCAATACTTGCAAGCTTGGCGAGAAGCTGTTTCGAATGGAGATGAACCGGTTAGGATCAATAAGGCACCCGAATTTGACACCCCTTTTGGGGTTCTGTGTTGTGGAAGAGGAAAAGCTTTTGGTTTATAAGTATATGTCTAACGGGACTTTGTCCTCTTTGTTACATGGAAATGGTGAGATATTGGATTGGGCAACTCGGTTTAGGATTGGTCTGGGTGCAGCCAGAGGTCTTGCTTGGCTTCACCATGGATGCCAACCTCCATTCATGCATCAAAACATTTGTTCTAGTGTAATTCTTGTGGATGAAGACTATGATGCTAGGATCATGGATTTTGGTTTGGCAAGGTTGATGGCTTCAGATTCTCATGACAGTAGTTTTGTTAATGGAGATTTAGGGGAACTTGGTTACGTCGCTCCCGAATACCCGAGCACCATGGTTGCTTCTTTGAAGGGGGATGTTTATGGATTTGGGGTTGTGCTTTTGGAGTTGATCACTGGCCAAAAACCTCTAGAAGTCACCAAAGCAGAGGAAGGCTATAAGGGTAACTTGGTGGATTGGGTTAATCAGCTAAGTATGTCGGGTCGAATCAAGGATGTTATTGATAAAGATCTTTGTGGGAAAGGGAACGATGAGGAAATCTTACAATTTCTGAAAATTACAATGAACTGCATTGTCTCTCGGCCCAAAGACAGGTGGTCTATGTATCAGGTTTATCAGTCAATGAAAACCATGGCTAAAGACTACAGTTTCCCTGAACCAGATGATGAATTCCCACTTTTACTTGGCAAGGGAGATAATGAACCCATAGGACTTGAGATTTCTACATCTTCTGGTGAGTTCTCAACGGCTCTTAATGTAAATCCACATGAAATCGCCTTTGCTCTAACGCTTATACCGACATTGCTTCTACTGCTCGATGCCTTGTATGTTTGCTTTATAAGCTTCATCATTGTTTCTTGCTATGTGATAAATGACCATCAAATACTCGAAATGTTATTGGGAGGACTCGGAATAAAAGCATTTCTGACATTCATTTCCCTAGACGTCTTAGAGTCGGTTACTGAGAAATATTGGTATCTCGTCGATAATGATATCATGATTTCATTTCTATGTGGTACCCTCCTCATTGTTTTGTATGATATGTATTTGATCCTTGCATTGAAATATGTAGCTGGTCAAAGTCAACATCAGACACATCTAATTGTCTCACTTTTGAATCCTGAAATTTCTTGGTTGAGAATCTATGTGAAAGACATGTAA 2187 42.52 MVPEDDIRCLRGVKNALVDPLGRLSSWDFKNTSVGHLCNKFVGLSCWNDRENRILSLELKDMKLSGSISEDLQYCVSLQKLDLSGNSFSGAIPPHICEWLPYLVSMDLSNNQFSGPIPADLARCSYLNSLILSDNELSGTIPVELTSLGRLNKFSVANNQLTGTVPSFFDKFGKEDFDGNSDLCGGPIGSSCGGLSKKNLAIIIAAGVFGAAASLLLGFGLWWWYHSRMNMKRRRGYGDGINGDWAGRLRAYKLVQVSLFQKPLVKVKLADLMAATNNFNSENIIVSSRTGTTYRAVLPDGSVLAIKRLNTCKLGEKLFRMEMNRLGSIRHPNLTPLLGFCVVEEEKLLVYKYMSNGTLSSLLHGNGEILDWATRFRIGLGAARGLAWLHHGCQPPFMHQNICSSVILVDEDYDARIMDFGLARLMASDSHDSSFVNGDLGELGYVAPEYPSTMVASLKGDVYGFGVVLLELITGQKPLEVTKAEEGYKGNLVDWVNQLSMSGRIKDVIDKDLCGKGNDEEILQFLKITMNCIVSRPKDRWSMYQVYQSMKTMAKDYSFPEPDDEFPLLLGKGDNEPIGLEISTSSGEFSTALNVNPHEIAFALTLIPTLLLLLDALYVCFISFIIVSCYVINDHQILEMLLGGLGIKAFLTFISLDVLESVTEKYWYLVDNDIMISFLCGTLLIVLYDMYLILALKYVAGQSQHQTHLIVSLLNPEISWLRIYVKDM 728
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 21040071 21042949 - Lsi02G015170.1 Lsi02g01517 656259
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi02g01517 728 Gene3D Ribonuclease Inhibitor 4 194 IPR032675 -
Lsi02g01517 728 Gene3D Phosphorylase Kinase; domain 1 240 353 - -
Lsi02g01517 728 Gene3D Transferase(Phosphotransferase) domain 1 354 564 - -
Lsi02g01517 728 ProSiteProfiles Protein kinase domain profile. 279 553 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi02g01517 728 PANTHER RECEPTOR-LIKE PROTEIN 55 9 572 - -
Lsi02g01517 728 SUPERFAMILY Protein kinase-like (PK-like) 256 549 IPR011009 -
Lsi02g01517 728 Pfam Protein tyrosine and serine/threonine kinase 304 547 IPR001245 GO:0004672|GO:0006468
Lsi02g01517 728 SUPERFAMILY L domain-like 4 180 - -
Lsi02g01517 728 Pfam Leucine rich repeat N-terminal domain 4 47 IPR013210 -
Lsi02g01517 728 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 9 572 - -
Lsi02g01517 728 Pfam Leucine Rich Repeat 77 97 IPR001611 GO:0005515
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g01517 Lsi-Chr2:21040071 Lsi02g02183 Lsi-Chr2:28323883 4.44E-169 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
83406 PF07714 PK_Tyr_Ser-Thr 3.10E-29 CL0016 Lsi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi02g01517 - - csv:101209638 1119.38