Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi02g01538 ATGGAGTTTCAGGAGGGTTTGATGAAGTTTATGGTTCATAGACACGTTAAACACAACTGGGTTTTGGAGAAGGATTCTCCAGTTTCAGAGATAACTAATAGTCCAAGGCGGAAATGGCGGATCTTCAGTCGGTCTTCTTCATCCCCATTTCCGTCAAAACCCCAATTGAAGGAAATACCCAAAGAATTGCTCTGTCCCATTTCTGGGTCTTTAATGGCGGACCCTGTAATTGTCTCCTCTGGTCATACTTTTGAAGCTGCCTGTGTTCAGGTTTGTAAAGATTTAGGGTTGAAGCCCACTCTACTAGATGGTTCGAAGCCGGATTTCTCTTCTGTAATTCCAAATCTGGCTCTCAAATCCACCATTTTCAATTGGTGTAAAAACTCCACTTCTGAACCCCCAAAACCCCTCGATTTTTCCTCTGCTGAAAAGCTCGTTCGTAAATTCATGGCGGCCCACATCAAAAGCGATGAGGAATTGATTCAAGGGGTTGCTGAGAATCCGGTGGTTCGATTCAACCACGCGGCCACTGAAGTCACCCGTCGGACCTCTCATTTTCACTCGAGCTCCGATGAATCTGTAAGCGCCGCCGTTCCAACTCTGCCCCTTCCTCTTGCGACTCGACCGAGTTGCTGTTCTTCGTCTTCTTCCTCTGACATCGAGATCATTGGTACTCTGAACTTGCCCGAAGAAGAAGAGATCATCGCGAAGCTTAAAAGCCCTCAGGTTATTGAAATTGAAGAGGCTGTGACTACGCTGAGAAAAATCACAAGAACTCGAGAGGACACTAGGGTTCAGCTCTGTTCTCCTCTGATTCTCTCTGCTCTGCGATCTCTCATCGTCTCAAGGTACACTGGGGTTCAAGTGAATTCAGTTGCAGCGCTTGTAAATCTATCTTTAGAGAATTTGAACAAGGTCAAGATCGTACGTTCGGGGATTCTCCCCAATTTGATCGATGTTCTGAAAGGGGGTTCGCCGGAGGTTCAAGAACATGCTGCCGGCGCCATTTTCAGCTTAGCTCTCGACGACGACAACAAGACGGCAATCGGCGTATTGGGTGCTCTGCCACCATTGATACGGCTGTTGATATCCGACTCGGAGCAAACTCGGCACGACTCAGCTCTTGCTCTTTACCACTTATCGCACGTTCAAAGCAACCGTTCGAAGCTTGTGAAACTTGGATCGGTGCCGGTTTTTCTCGGGATGGTGAAATCCCGCCACATGGCCGGCCGTATTTTGCTGATTTTGTGTAATTTAGCAGCTTGTTTTGAGGGCCGGGCGGCGTTGTTGGACTCCGGCGCGGTGGAGTGTTTGGTGGGGATGTTGAGGGAGAACGAGTTGGACTCTGAGTCGACCCGGGAGAGTTGTGTGGCGGTTCTGTTTGGACTGAGTTACGGCGGTTTGAGGTTCAAGGGTCTGGCTAAAACCGCCGGAGCAATGGATGTTTTCATGGCGGTTGAGAAAAATGGAAGTGAGAGATCAAAAGAGAAGGTGAAGAGGATCATGGAGTATATGAAAGCCAGAGATGAGGAAGCTGAGGATGTGAATTGGGAGGAATTGCTCGACTCAGGTTGTTTCGGCAGCCGAACTCGGTGTCGACTTGGCGCCGGACTGGACCGATCCACCGCGAACTCGTCCGAGTTCTGA 1647 49.24 MEFQEGLMKFMVHRHVKHNWVLEKDSPVSEITNSPRRKWRIFSRSSSSPFPSKPQLKEIPKELLCPISGSLMADPVIVSSGHTFEAACVQVCKDLGLKPTLLDGSKPDFSSVIPNLALKSTIFNWCKNSTSEPPKPLDFSSAEKLVRKFMAAHIKSDEELIQGVAENPVVRFNHAATEVTRRTSHFHSSSDESVSAAVPTLPLPLATRPSCCSSSSSSDIEIIGTLNLPEEEEIIAKLKSPQVIEIEEAVTTLRKITRTREDTRVQLCSPLILSALRSLIVSRYTGVQVNSVAALVNLSLENLNKVKIVRSGILPNLIDVLKGGSPEVQEHAAGAIFSLALDDDNKTAIGVLGALPPLIRLLISDSEQTRHDSALALYHLSHVQSNRSKLVKLGSVPVFLGMVKSRHMAGRILLILCNLAACFEGRAALLDSGAVECLVGMLRENELDSESTRESCVAVLFGLSYGGLRFKGLAKTAGAMDVFMAVEKNGSERSKEKVKRIMEYMKARDEEAEDVNWEELLDSGCFGSRTRCRLGAGLDRSTANSSEF 548
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 21230837 21232483 + Lsi02G015380.1 Lsi02g01538 656280
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi02g01538 548 CDD RING-Ubox 64 96 - -
Lsi02g01538 548 SMART arm_5 342 382 IPR000225 GO:0005515
Lsi02g01538 548 SMART arm_5 301 341 IPR000225 GO:0005515
Lsi02g01538 548 SMART arm_5 260 300 IPR000225 GO:0005515
Lsi02g01538 548 SMART arm_5 422 465 IPR000225 GO:0005515
Lsi02g01538 548 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 58 131 IPR013083 -
Lsi02g01538 548 SUPERFAMILY RING/U-box 53 129 - -
Lsi02g01538 548 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 38 36 536 - -
Lsi02g01538 548 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 353 395 IPR000225 GO:0005515
Lsi02g01538 548 SUPERFAMILY ARM repeat 234 493 IPR016024 -
Lsi02g01538 548 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 312 349 IPR000225 GO:0005515
Lsi02g01538 548 Pfam Armadillo/beta-catenin-like repeat 342 381 IPR000225 GO:0005515
Lsi02g01538 548 Pfam Armadillo/beta-catenin-like repeat 304 340 IPR000225 GO:0005515
Lsi02g01538 548 ProSiteProfiles U-box domain profile. 58 132 IPR003613 GO:0004842|GO:0016567
Lsi02g01538 548 SMART Ubox_2 62 125 IPR003613 GO:0004842|GO:0016567
Lsi02g01538 548 PANTHER U BOX DOMAIN-CONTAINING 36 536 - -
Lsi02g01538 548 Pfam U-box domain 59 128 IPR003613 GO:0004842|GO:0016567
Lsi02g01538 548 Gene3D - 229 504 IPR011989 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g01538 Lsi-Chr2:21230837 Lsi06g01520 Lsi-Chr6:25618577 1.03E-174 dispersed
Lsi02g00349 Lsi-Chr2:2996314 Lsi02g01538 Lsi-Chr2:21230837 1.60E-155 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi02g01538 - - cmax:111489531 961.444