Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi02g01539 ATGGGGATAACTTCAAAAATTCACCATAGAATGAGATCAGAGTTTTGGCTTGATTCACCTGCTGCACCACGCCGTCGGCAAGCTTCCTATGGCCGCAAAAATCAAAATCCTTCCGATAGTGGGTCCCTTCTCTTTCCATATTCTTCTTCTTCGTCTTCTTCAGTTCTTCACCATTTTTCTCAATTCTCATTCTCTCTTTCTCTCATCCCCATGGACTTTCTCTTCTTCTTCCTCCTCCTCCTCTCCGTCTTCTCTCATTCCGCCTCCGCTGCTCTCTCCGCCGACTACTACCGCAATTCCTGCCCTGCATTTTCTCAGATCATCCGCGACACTGTTACCAACAAGCAAATCACCACTCCCACCACCGCTGCCGCCACACTCCGCCTCTTCTTCCACGACTGTCTCCCCAACGGCTGCGACGCCTCCATCCTCATCTCCTCCACCCCCTTCAACGTCGCCGAGCGCAACGCCGACATCAACCTCTCCCTTCCCGGCGACGCCTTCGACGTTGTCGTCCGTGCTAAAACCGCCCTCGAACTCGCCTGCCCCAACACCGTCTCCTGTGCCGACATCCTCGCCGCCGCCACTCGCGACCTCCTCACCATGGTTGGCGGCCCTTACTACACCGTCTTCCTCGGCCGCAAAGACGCCAAGGTTTCCAGAGCTTCAGCTATTCAAGGCACGCTCCCTAGACCCACCATGTCAGTCTCTGAGATCATCAGAATTTTTGCCTCCAGAGGATTTTCCGTTCAGGAAATGGTGGCGCTAAGCGGCGCTCATTCGATTGGCTTCTCGCATTGCAAGGAGTTCACCTCTGGGATCTTCAATTACAGCAAATCCCCACCCTACGATAGCCATTACAACCCTCGATTCGCATTAGGGTTACAGAGAGCTTGCGCTGATTACCAGAAGAATCCAACTCTATCGGTTTTTAACGACATTATGACGCCGAACAAATTCGACAACATGTATTTCAAGAATCTGCAGAAGGGGTTAGGGCTTTTGAAGTCCGATGGCGGATTGTACAGCGATCCAAGAACGAGGCCATGGGTGGAGAAATACGCTGCAGATGAGAGCGTGTTCTTCGCGGCGTTTTCTCAAGCAATGGTGAAACTTGGTGGCTATGGCGTCAAAGTGGGGAATGAAGGAGAAATCAGACGCAGAAGGCTTTTATTTGGCATCTTCACCAGGAAAAGAGAAAAAAAGGAAACAGATGAAGATGAAGGAAAAAACAGAGTTAAAAATCAAATCAAATCAAAAGGGATTCAAATGAGTTCTATTCAGAACTCGGACGAGTTCGCGGTGGATCGGTCCAGTCCGGCGCCAAGTCGACACCGAGTTCGGCTGCCGAAACAACCTGAGTCGAGCAATTCCTCCCAATTCACATCCTCAGCTTCCTCATCTCTGGCTTTCATATACTCCATGATCCTCTTCACCTTCTCTTTTGATCTCTCACTTCCATTTTTCTCAACCGCCATGAAAACATCCATTGCTCCGGCGGTTTTAGCCAGACCCTTGAACCTCAAACCGCCAACCGCCACACAACTCTCCCGGGTCGACTCAGAGTCCAACTCGTTCTCCCTCAACATCCCCACCAAACACTCCACCGCGCCGGAGTCCAACAACGCCGCCCGGCCCTCAAAACAAGCTGCTAAATTACACAAAATCAGCAAAATACGGCCGGCCATGTGGCGGGATTTCACCATCCCGAGAAAAACCGGCACCGATCCAAGTTTCACAAGCTTCGAACGAGCAAGAGCTGAGTCGTGCCGAGTTTGCTCCGAGTCGGATATCAACAGCCGTATCAATGGTGGCAGAGCACCCAATACGCCGATTGCCGTCTTGTTGTCGTCGTCGAGAGCTAAGCTGAAAATGGCGCCGGCAGCATATTTACAAGCGCTGCAACTGAATTCACTTGAACCCCAAGAGAATCAGAGGAGAACAGAGCTGAACCCTAGTGTCCTCTCGAGTTCTTGTGATTTTTCTCAGCGTAGTCACAGCCTCTTCAATTTCAATAACCTGAGGGCTTTTAAGCTTCGCGATGATCTCTTCTTCTTCGGGCAAGTTCAGAGTACCAATGATCTCGATGTCAGAGGAAGAAGACGAAGAACAGCAACTCGGTCGAGTCGCAAGAGGAAGGGGCAGAGTTGGAACGGCGGCGCTTACAGATTCATCGGAGCTCGAGTGAAAATGAGAGGTCCGACGGGTGACTTCAGTGGCCGCGTGGTTGAATCGAACCACCGGATTCTCAGCAACCCCTTGAATCAATTCCTCATCGCTTTTGATGTGGGCCGCCATGAATTTACGAACGAGCTTTTCAGCAGAGGAAAAATCGAGGGGTTTTGGGGGTTCAGAAGTGGAGTTTTTACACCAATTGAAAATGATTTGGAATTACAGAAGAGAAATCCGGCTTCGAACCATCTAGTAGAGTGGGCTTCAACCCTAAATCTTTACAAACCTGAACACAGGCAGCTTCAAAAGTATGACCAGAGGAGACAATTACAGGGTCCGCCATTAAAGACCCAGAAATGGGACAGAGCAATTCTTTGGGTATTTCCTTCAATTGGGGTTTTGACGGAAATGGGGATGAAGAAGACCGACTGA 2604 50.35 MGITSKIHHRMRSEFWLDSPAAPRRRQASYGRKNQNPSDSGSLLFPYSSSSSSSVLHHFSQFSFSLSLIPMDFLFFFLLLLSVFSHSASAALSADYYRNSCPAFSQIIRDTVTNKQITTPTTAAATLRLFFHDCLPNGCDASILISSTPFNVAERNADINLSLPGDAFDVVVRAKTALELACPNTVSCADILAAATRDLLTMVGGPYYTVFLGRKDAKVSRASAIQGTLPRPTMSVSEIIRIFASRGFSVQEMVALSGAHSIGFSHCKEFTSGIFNYSKSPPYDSHYNPRFALGLQRACADYQKNPTLSVFNDIMTPNKFDNMYFKNLQKGLGLLKSDGGLYSDPRTRPWVEKYAADESVFFAAFSQAMVKLGGYGVKVGNEGEIRRRRLLFGIFTRKREKKETDEDEGKNRVKNQIKSKGIQMSSIQNSDEFAVDRSSPAPSRHRVRLPKQPESSNSSQFTSSASSSLAFIYSMILFTFSFDLSLPFFSTAMKTSIAPAVLARPLNLKPPTATQLSRVDSESNSFSLNIPTKHSTAPESNNAARPSKQAAKLHKISKIRPAMWRDFTIPRKTGTDPSFTSFERARAESCRVCSESDINSRINGGRAPNTPIAVLLSSSRAKLKMAPAAYLQALQLNSLEPQENQRRTELNPSVLSSSCDFSQRSHSLFNFNNLRAFKLRDDLFFFGQVQSTNDLDVRGRRRRTATRSSRKRKGQSWNGGAYRFIGARVKMRGPTGDFSGRVVESNHRILSNPLNQFLIAFDVGRHEFTNELFSRGKIEGFWGFRSGVFTPIENDLELQKRNPASNHLVEWASTLNLYKPEHRQLQKYDQRRQLQGPPLKTQKWDRAILWVFPSIGVLTEMGMKKTD 867
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 21230961 21235818 - Lsi02G015390.1 Lsi02g01539 656281
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi02g01539 867 ProSitePatterns Peroxidases proximal heme-ligand signature. 252 262 IPR019793 -
Lsi02g01539 867 CDD secretory_peroxidase 95 388 IPR033905 GO:0004601|GO:0042744
Lsi02g01539 867 PRINTS Plant peroxidase signature 185 195 IPR000823 GO:0004601|GO:0006979|GO:0020037
Lsi02g01539 867 PRINTS Plant peroxidase signature 327 344 IPR000823 GO:0004601|GO:0006979|GO:0020037
Lsi02g01539 867 PRINTS Plant peroxidase signature 166 179 IPR000823 GO:0004601|GO:0006979|GO:0020037
Lsi02g01539 867 PRINTS Plant peroxidase signature 125 145 IPR000823 GO:0004601|GO:0006979|GO:0020037
Lsi02g01539 867 PRINTS Plant peroxidase signature 101 120 IPR000823 GO:0004601|GO:0006979|GO:0020037
Lsi02g01539 867 PRINTS Plant peroxidase signature 204 219 IPR000823 GO:0004601|GO:0006979|GO:0020037
Lsi02g01539 867 PRINTS Plant peroxidase signature 311 326 IPR000823 GO:0004601|GO:0006979|GO:0020037
Lsi02g01539 867 PRINTS Plant peroxidase signature 367 380 IPR000823 GO:0004601|GO:0006979|GO:0020037
Lsi02g01539 867 PRINTS Plant peroxidase signature 251 263 IPR000823 GO:0004601|GO:0006979|GO:0020037
Lsi02g01539 867 PANTHER PEROXIDASE 31 72 388 - -
Lsi02g01539 867 ProSiteProfiles Plant heme peroxidase family profile. 91 393 IPR002016 GO:0004601|GO:0006979|GO:0020037
Lsi02g01539 867 MobiDBLite consensus disorder prediction 416 436 - -
Lsi02g01539 867 Pfam Peroxidase 112 357 IPR002016 GO:0004601|GO:0006979|GO:0020037
Lsi02g01539 867 Gene3D - 95 387 - -
Lsi02g01539 867 PRINTS Haem peroxidase superfamily signature 186 203 IPR002016 GO:0004601|GO:0006979|GO:0020037
Lsi02g01539 867 PRINTS Haem peroxidase superfamily signature 252 267 IPR002016 GO:0004601|GO:0006979|GO:0020037
Lsi02g01539 867 PRINTS Haem peroxidase superfamily signature 204 216 IPR002016 GO:0004601|GO:0006979|GO:0020037
Lsi02g01539 867 PRINTS Haem peroxidase superfamily signature 123 137 IPR002016 GO:0004601|GO:0006979|GO:0020037
Lsi02g01539 867 PRINTS Haem peroxidase superfamily signature 313 328 IPR002016 GO:0004601|GO:0006979|GO:0020037
Lsi02g01539 867 Gene3D Peroxidase, domain 2 230 372 - -
Lsi02g01539 867 MobiDBLite consensus disorder prediction 401 462 - -
Lsi02g01539 867 MobiDBLite consensus disorder prediction 401 415 - -
Lsi02g01539 867 PANTHER - 72 388 IPR000823 GO:0004601|GO:0006979|GO:0020037
Lsi02g01539 867 SUPERFAMILY Heme-dependent peroxidases 92 388 IPR010255 GO:0004601|GO:0006979|GO:0020037
Lsi02g01539 867 ProSitePatterns Peroxidases active site signature. 123 134 IPR019794 GO:0004601
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g01539 Lsi-Chr2:21230961 Lsi06g01521 Lsi-Chr6:25632662 8.53E-126 dispersed
Lsi10g00515 Lsi-Chr10:7360540 Lsi02g01539 Lsi-Chr2:21230961 5.29E-60 transposed
Lsi02g00351 Lsi-Chr2:3006170 Lsi02g01539 Lsi-Chr2:21230961 2.08E-120 wgd
Lsi02g01539 Lsi-Chr2:21230961 Lsi03g01427 Lsi-Chr3:25241352 9.10E-167 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi02g01539 K00430 - csv:105435603 552.362