Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi02g01542 ATGGCTCCCAGCTCTGTTGTCGTCACAATTGAGAAGCATAACAGCTTCCCTTTAGTGGAAATCAATGGCTCTGATTCTTTGTTACTTCCTGAGAAACAGAAGGCTGCCAGTCCTAAGCAGCTCACATGGGTTCTTCTTCTCAAAGCTCACAGAGCTCTGTTTTTCTTCTCATGGCTGGCTATGACTGTGAAGGCTGTGTTTGCTTCTGTTAAGAAACGCATTGCTCATGCGGATATTAACGAAGAGGATTCCAAAAGCCGAGGGAAATTGTATAGATTCATCAAGGCTTTTCTTGTTATTTCAATTGCGGGTTTAATCGTTGAAGTTGTCGCCCATTTCAAGAAGTGGAATCTGCGAATGATTCAGCCATTGGAGCTTGAGGTTCATGGGCTTGTTCAATGGTTTTATATTTCCTGGCTTTCGTTTCGAGTTGATTACATTGCTCCACTGGTATTAATGCTTTCCAAATTCTGCATTGTTCTGTTCTTGATCCAATCTCTCGATCGTCTTGTTCTCTGTTTTGGCTGCTTTTGGATCAAGTACAAGAAAATCAAACCCACGATTCAAGATGACGCTTATGATTTGGAAGATGCTTCAACTTTTCCTATGGTTCTTGTTCAAATCCCAATGTGTAATGAGAGAGAGGTCTATGCACAATCGATTGCTGCTGCTTGTGAGCTTGACTGGCCCAGGAATCGAATTTTGATTCAAGTTCTAGATGATTCAGACGATGGAAATCTTCAGCGTTTGATCAAAGAAGAAGTTCTTTCATGGAATGAAAAGGGTGTTAATATCGTTTATAGACATAGACTGATCCGAACTGGGTACAAAGCTGGGAATCTCAAGTCTGCCATGGGTTGTGATTACGTTAAAGATTATGAATTTGTAGCTATTTTAGATGCAGATTTCCAGCCCAACCCTGATTTCCTTAAACTAACTATCCCCCATTTCAAGGGAAATCCTGAGCTGGGTCTTGTCCAAGCTCGTTGGGCGTTTGTAAACAAGGAAGAAAACTTACTTACAAGACTCCAAAACATAAACTTGTGCTTCCACTTTGAAGTGGAGCAGCAAGTTAATGGAGTTTTCCTGAACTTCTTTGGATTCAATGGAACAGCAGGCGTTTGGAGAACGAAAGCACTTGAGGAATCCGGTGGCTGGCTCGAGCGGACGACTGTGGAAGATATGGATATCGCAGTTCGAGCACACTTGAAGGGTTGGAAATTCATCTTCCTCAATGATGTTAAAGTGCTTTGTGAATTGCCTGAATCATATGAAGCTTACAAGAAACAGCAACACCGTTGGCATTCTGGTCCAATGCAGCTATTCAGATTATGCCTTCCTTCGATCATTACTTCAAAGATATCGATATGGAAGAAGACCAACTTGATATTTCTGTTCTTTCTCCTGAGAAAACTCATACTTCCCTTTTACTCATTCACTTTGTTTTGCATCATACTTCCATTGACAATGTTTATTCCAGAAGCAGAATTACCTCTTTGGGTAATCTGCTACATCCCAGTCTTCATGTCCTTACTAAACATTCTTCCATCCCCAAAATCCTTCCCCTTCTTGATCCCATATCTCTTGTTTGAGAACACAATGTCTGTCACAAAGTTCAACGCCATGGTTTCGGGGCTATTCCAGCTCGGAAGTTCATACGAATGGGTCGTGACGAAGAAGACAGGACGATCATCCGAATCCGACTTCTTAGCATTCGCAGAGCGAGAGTCGAAAACATCGAACGACGAGAAGATACTGAGGAGACATTCGGAGTCGGGGCTGGAGTTGTTGAGTAAATTGAACCAACAAGAGAAGCAAAAGGGTTCAAAGAAGAAGAGAAACAAGGTGTATAGAAAAGAGCTTGCTCTTGCTTTTCTGCTGCTCACTGCATCTGCTAGAAGCTTGCTGTCAGAACATGGAGTTCACTTCTATTTCTTGCTTTTCCAAGGGTTGTCATTCCTGGCGGTGGGTTTGGACTTGATTGGTGAGCAAATGAACTGA 2001 42.23 MAPSSVVVTIEKHNSFPLVEINGSDSLLLPEKQKAASPKQLTWVLLLKAHRALFFFSWLAMTVKAVFASVKKRIAHADINEEDSKSRGKLYRFIKAFLVISIAGLIVEVVAHFKKWNLRMIQPLELEVHGLVQWFYISWLSFRVDYIAPLVLMLSKFCIVLFLIQSLDRLVLCFGCFWIKYKKIKPTIQDDAYDLEDASTFPMVLVQIPMCNEREVYAQSIAAACELDWPRNRILIQVLDDSDDGNLQRLIKEEVLSWNEKGVNIVYRHRLIRTGYKAGNLKSAMGCDYVKDYEFVAILDADFQPNPDFLKLTIPHFKGNPELGLVQARWAFVNKEENLLTRLQNINLCFHFEVEQQVNGVFLNFFGFNGTAGVWRTKALEESGGWLERTTVEDMDIAVRAHLKGWKFIFLNDVKVLCELPESYEAYKKQQHRWHSGPMQLFRLCLPSIITSKISIWKKTNLIFLFFLLRKLILPFYSFTLFCIILPLTMFIPEAELPLWVICYIPVFMSLLNILPSPKSFPFLIPYLLFENTMSVTKFNAMVSGLFQLGSSYEWVVTKKTGRSSESDFLAFAERESKTSNDEKILRRHSESGLELLSKLNQQEKQKGSKKKRNKVYRKELALAFLLLTASARSLLSEHGVHFYFLLFQGLSFLAVGLDLIGEQMN 666
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
2 21280256 21283201 + Lsi02G015420.1 Lsi02g01542 656284
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Lsi02g01542 666 SUPERFAMILY Nucleotide-diphospho-sugar transferases 204 504 IPR029044 -
Lsi02g01542 666 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 194 421 IPR029044 -
Lsi02g01542 666 PANTHER - 2 665 - -
Lsi02g01542 666 Coils Coil 600 620 - -
Lsi02g01542 666 PANTHER XYLOGLUCAN GLYCOSYLTRANSFERASE 4 2 665 - -
Lsi02g01542 666 Pfam Glycosyl transferase family group 2 296 501 IPR001173 -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g01542 Lsi-Chr2:21280256 Lsi04g02204 Lsi-Chr4:29073775 0 dispersed
Lsi02g01542 Lsi-Chr2:21280256 Lsi04g01454 Lsi-Chr4:22296233 0 transposed
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi02g01542 K20887 - csv:101208151 1253.43