Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi02g01542 ATGGCTCCCAGCTCTGTTGTCGTCACAATTGAGAAGCATAACAGCTTCCCTTTAGTGGAAATCAATGGCTCTGATTCTTTGTTACTTCCTGAGAAACAGAAGGCTGCCAGTCCTAAGCAGCTCACATGGGTTCTTCTTCTCAAAGCTCACAGAGCTCTGTTTTTCTTCTCATGGCTGGCTATGACTGTGAAGGCTGTGTTTGCTTCTGTTAAGAAACGCATTGCTCATGCGGATATTAACGAAGAGGATTCCAAAAGCCGAGGGAAATTGTATAGATTCATCAAGGCTTTTCTTGTTATTTCAATTGCGGGTTTAATCGTTGAAGTTGTCGCCCATTTCAAGAAGTGGAATCTGCGAATGATTCAGCCATTGGAGCTTGAGGTTCATGGGCTTGTTCAATGGTTTTATATTTCCTGGCTTTCGTTTCGAGTTGATTACATTGCTCCACTGGTATTAATGCTTTCCAAATTCTGCATTGTTCTGTTCTTGATCCAATCTCTCGATCGTCTTGTTCTCTGTTTTGGCTGCTTTTGGATCAAGTACAAGAAAATCAAACCCACGATTCAAGATGACGCTTATGATTTGGAAGATGCTTCAACTTTTCCTATGGTTCTTGTTCAAATCCCAATGTGTAATGAGAGAGAGGTCTATGCACAATCGATTGCTGCTGCTTGTGAGCTTGACTGGCCCAGGAATCGAATTTTGATTCAAGTTCTAGATGATTCAGACGATGGAAATCTTCAGCGTTTGATCAAAGAAGAAGTTCTTTCATGGAATGAAAAGGGTGTTAATATCGTTTATAGACATAGACTGATCCGAACTGGGTACAAAGCTGGGAATCTCAAGTCTGCCATGGGTTGTGATTACGTTAAAGATTATGAATTTGTAGCTATTTTAGATGCAGATTTCCAGCCCAACCCTGATTTCCTTAAACTAACTATCCCCCATTTCAAGGGAAATCCTGAGCTGGGTCTTGTCCAAGCTCGTTGGGCGTTTGTAAACAAGGAAGAAAACTTACTTACAAGACTCCAAAACATAAACTTGTGCTTCCACTTTGAAGTGGAGCAGCAAGTTAATGGAGTTTTCCTGAACTTCTTTGGATTCAATGGAACAGCAGGCGTTTGGAGAACGAAAGCACTTGAGGAATCCGGTGGCTGGCTCGAGCGGACGACTGTGGAAGATATGGATATCGCAGTTCGAGCACACTTGAAGGGTTGGAAATTCATCTTCCTCAATGATGTTAAAGTGCTTTGTGAATTGCCTGAATCATATGAAGCTTACAAGAAACAGCAACACCGTTGGCATTCTGGTCCAATGCAGCTATTCAGATTATGCCTTCCTTCGATCATTACTTCAAAGATATCGATATGGAAGAAGACCAACTTGATATTTCTGTTCTTTCTCCTGAGAAAACTCATACTTCCCTTTTACTCATTCACTTTGTTTTGCATCATACTTCCATTGACAATGTTTATTCCAGAAGCAGAATTACCTCTTTGGGTAATCTGCTACATCCCAGTCTTCATGTCCTTACTAAACATTCTTCCATCCCCAAAATCCTTCCCCTTCTTGATCCCATATCTCTTGTTTGAGAACACAATGTCTGTCACAAAGTTCAACGCCATGGTTTCGGGGCTATTCCAGCTCGGAAGTTCATACGAATGGGTCGTGACGAAGAAGACAGGACGATCATCCGAATCCGACTTCTTAGCATTCGCAGAGCGAGAGTCGAAAACATCGAACGACGAGAAGATACTGAGGAGACATTCGGAGTCGGGGCTGGAGTTGTTGAGTAAATTGAACCAACAAGAGAAGCAAAAGGGTTCAAAGAAGAAGAGAAACAAGGTGTATAGAAAAGAGCTTGCTCTTGCTTTTCTGCTGCTCACTGCATCTGCTAGAAGCTTGCTGTCAGAACATGGAGTTCACTTCTATTTCTTGCTTTTCCAAGGGTTGTCATTCCTGGCGGTGGGTTTGGACTTGATTGGTGAGCAAATGAACTGA 2001 42.23 MAPSSVVVTIEKHNSFPLVEINGSDSLLLPEKQKAASPKQLTWVLLLKAHRALFFFSWLAMTVKAVFASVKKRIAHADINEEDSKSRGKLYRFIKAFLVISIAGLIVEVVAHFKKWNLRMIQPLELEVHGLVQWFYISWLSFRVDYIAPLVLMLSKFCIVLFLIQSLDRLVLCFGCFWIKYKKIKPTIQDDAYDLEDASTFPMVLVQIPMCNEREVYAQSIAAACELDWPRNRILIQVLDDSDDGNLQRLIKEEVLSWNEKGVNIVYRHRLIRTGYKAGNLKSAMGCDYVKDYEFVAILDADFQPNPDFLKLTIPHFKGNPELGLVQARWAFVNKEENLLTRLQNINLCFHFEVEQQVNGVFLNFFGFNGTAGVWRTKALEESGGWLERTTVEDMDIAVRAHLKGWKFIFLNDVKVLCELPESYEAYKKQQHRWHSGPMQLFRLCLPSIITSKISIWKKTNLIFLFFLLRKLILPFYSFTLFCIILPLTMFIPEAELPLWVICYIPVFMSLLNILPSPKSFPFLIPYLLFENTMSVTKFNAMVSGLFQLGSSYEWVVTKKTGRSSESDFLAFAERESKTSNDEKILRRHSESGLELLSKLNQQEKQKGSKKKRNKVYRKELALAFLLLTASARSLLSEHGVHFYFLLFQGLSFLAVGLDLIGEQMN 666
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 21280256 21283201 + Lsi02G015420.1 Lsi02g01542 656284

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi02g01542 666 SUPERFAMILY Nucleotide-diphospho-sugar transferases 204 504 IPR029044 -
Lsi02g01542 666 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 194 421 IPR029044 -
Lsi02g01542 666 PANTHER - 2 665 - -
Lsi02g01542 666 Coils Coil 600 620 - -
Lsi02g01542 666 PANTHER XYLOGLUCAN GLYCOSYLTRANSFERASE 4 2 665 - -
Lsi02g01542 666 Pfam Glycosyl transferase family group 2 296 501 IPR001173 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi02g01542 K20887 CSLC4; xyloglucan glycosyltransferase 4 [EC:2.4.1.-] - csv:101208151 1253.43
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g01542 Lsi-Chr2:21280256 Lsi04g02204 Lsi-Chr4:29073775 0 dispersed
Lsi02g01542 Lsi-Chr2:21280256 Lsi04g01454 Lsi-Chr4:22296233 0 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi14g1401 . . . . . . . . . . . . . . Sed11g1949 . Cpe13g00918 Bhi06g00485 Tan11g0591 Cmetu09g0739 . Hepe02g3123 . Lcy10g1947 . . . . . . . . . Cone2ag0150 Cone16ag0905 Lsi02g01542 Csa05g02920 . . . . . . . . . . . Cmo04g02854 Cmo15g00330 Cma04g02723 Cma15g00318 Car04g02628 Car15g00304 . Cpe01g02362 . . . . . . . Cla09g01834 . . Cco09g2084 . . . . . Chy09g00318 Cme09g00337
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lsi10g00322 . 220 382 REM Transcription Factor Family AT1G49480 70.6 6.5e-57 217.6
Lsi04g02204 . 1 695 REM Transcription Factor Family AT2G24630 77.6 0.0e+00 1093.6
Lsi02g01542 . 6 666 REM Transcription Factor Family AT2G24630 69.5 3.6e-268 921.0
Lsi08g01551 CCT 5 698 REM Transcription Factor Family AT2G24630 65.8 2.9e-257 884.8
Lsi04g01454 CCT 1 752 REM Transcription Factor Family AT2G24630 59.8 1.9e-253 872.1
Lsi02g02134 . 5 694 REM Transcription Factor Family AT2G24630 61.7 3.9e-246 847.8
Lsi04g02204 . 1 695 REM Transcription Factor Family AT2G24630 77.6 0.0e+00 1093.6
Lsi02g01542 . 6 666 REM Transcription Factor Family AT2G24630 69.5 3.6e-268 921.0
Lsi08g01551 CCT 5 698 REM Transcription Factor Family AT2G24630 65.8 2.9e-257 884.8
Lsi04g01454 CCT 1 752 REM Transcription Factor Family AT2G24630 59.8 1.9e-253 872.1
Lsi02g02134 . 5 694 REM Transcription Factor Family AT2G24630 61.7 3.9e-246 847.8
Lsi04g02204 . 1 695 REM Transcription Factor Family AT2G24630 77.6 0.0e+00 1093.6
Lsi02g01542 . 6 666 REM Transcription Factor Family AT2G24630 69.5 3.6e-268 921.0
Lsi08g01551 CCT 5 698 REM Transcription Factor Family AT2G24630 65.8 2.9e-257 884.8
Lsi04g01454 CCT 1 752 REM Transcription Factor Family AT2G24630 59.8 1.9e-253 872.1
Lsi02g02134 . 5 694 REM Transcription Factor Family AT2G24630 61.7 3.9e-246 847.8
Lsi10g00322 . 220 382 REM Transcription Factor Family AT1G49480 70.6 6.5e-57 217.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010069 0 1 0 0 0 1 2 1 1 1 2 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 1 33
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi02g01542 Lsi_Chr02 FPKM 41.823147 48.859795 37.359623 39.244549 49.465359 37.781319 53.188049 34.289776 34.389416 38.535915