Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi02g01544 ATGGCGGTAAGTGGAAGAAGTTTGATGGAAGGGGTTCTGCCATTTCCGGCGATGATGGCGATGGAGTGTATCAACGTTGGTCTCAACACTCTTTTCAAAGCCGCCGCCGCTGCCGGCATGAGCCACCACGTGTTCGTTGTCTATTCTTACTCTTTCGCCGCCCTTCTTCTCCTCCCTTCTCCGTTCATCTCTCGCAGATCCACTCGTGTTCCACCTCTCAATTTCTCTGTACTTTCAAAGATTGCTCTTCTTGGACTAATAGGTTCATCTTCGCAGATTATGGGATACACAGGAATCAATTACAGTTCTCCTACTCTTGCTTCCGCCATCAGCAACCTTGTTCCTGCTTTCACTTTCATTCTTGCCATCATTTTCAGGATGGAGAAAGTGGTATTGAAAAGCAATAGCAGTCAAGCAAAAGTGATGGGCACCATAATATCAATATCAGGTGCATTTGTGGTCACATTTTACAAGGGTCCAAGGATCATATTCTCTTCAGCACCCATTTCTCTTTCACTTCATCACCATCCACTACTATCCTCTTCAGATTCTAATTGGATCATTGGCAGTCTTCTCTTGACTGCTGAATATATCTTGGTTCCACTTTGGTACATTGTTCAGACAAAAATAATGAAGGAATACCCAGAAGAGGCAACAGTGATCTTCTTCTACAACTTAAATGTGGCCATCATAGCTACAGCTGTAGGTGTGATTTTTGAGACAGATCCAAGTGCTTGGATTTTGAGGCAAAATACAGCATTGGCCTCTGTTTTATGCTCTGGACTATTTGGATCATGTTTAAATAATACAGTTCATACATGGGCACTCCGCTTGAAAGGGCCAGTGTTCGTTGCTATGTTTAAGCCGTTGTCCATCGTTGTCGCTATCGTAATGGGTGTTCTGTTTCTTGGTGATTCTCTATATCTTGGAAGTGTTATTGGAGCATCCATAATATCCATAGGGTTTTATACTGTAATGTGGGGAAAAGCAAAAGAAGAAATGGGTGTTGGAGAAGAAAAAGAAGAAGGCCATAGCCATAATCTTGATGGTAACAAGGAATCAAATGAAGATCAGAGAGTACCTCTTCTTGGAAGCTACAACACACAGAGATACAGTGCAGACCATGTATGA 1131 42.62 MAVSGRSLMEGVLPFPAMMAMECINVGLNTLFKAAAAAGMSHHVFVVYSYSFAALLLLPSPFISRRSTRVPPLNFSVLSKIALLGLIGSSSQIMGYTGINYSSPTLASAISNLVPAFTFILAIIFRMEKVVLKSNSSQAKVMGTIISISGAFVVTFYKGPRIIFSSAPISLSLHHHPLLSSSDSNWIIGSLLLTAEYILVPLWYIVQTKIMKEYPEEATVIFFYNLNVAIIATAVGVIFETDPSAWILRQNTALASVLCSGLFGSCLNNTVHTWALRLKGPVFVAMFKPLSIVVAIVMGVLFLGDSLYLGSVIGASIISIGFYTVMWGKAKEEMGVGEEKEEGHSHNLDGNKESNEDQRVPLLGSYNTQRYSADHV 376
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 21295930 21300722 - Lsi02G015440.1 Lsi02g01544 656286
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi02g01544 376 MobiDBLite consensus disorder prediction 336 356 - -
Lsi02g01544 376 Pfam EamA-like transporter family 25 155 IPR000620 GO:0016020|GO:0016021
Lsi02g01544 376 Pfam EamA-like transporter family 199 326 IPR000620 GO:0016020|GO:0016021
Lsi02g01544 376 PANTHER WAT1-RELATED PROTEIN 11 346 IPR030184 GO:0016021|GO:0022857
Lsi02g01544 376 MobiDBLite consensus disorder prediction 336 359 - -
Lsi02g01544 376 SUPERFAMILY Multidrug resistance efflux transporter EmrE 51 158 - -
Lsi02g01544 376 SUPERFAMILY Multidrug resistance efflux transporter EmrE 246 330 - -
Lsi02g01544 376 PANTHER WAT1-RELATED PROTEIN 11 346 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g01544 Lsi-Chr2:21295930 Lsi03g01416 Lsi-Chr3:25111457 8.27E-86 dispersed
Lsi02g01547 Lsi-Chr2:21326974 Lsi02g01544 Lsi-Chr2:21295930 8.33E-49 dispersed
Lsi02g01544 Lsi-Chr2:21295930 Lsi02g01545 Lsi-Chr2:21306261 3.32E-52 tandem
Lsi02g01544 Lsi-Chr2:21295930 Lsi04g00524 Lsi-Chr4:4839283 1.45E-63 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi02g01544 - - csv:101208880 643.654