Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lsi02g01544 | ATGGCGGTAAGTGGAAGAAGTTTGATGGAAGGGGTTCTGCCATTTCCGGCGATGATGGCGATGGAGTGTATCAACGTTGGTCTCAACACTCTTTTCAAAGCCGCCGCCGCTGCCGGCATGAGCCACCACGTGTTCGTTGTCTATTCTTACTCTTTCGCCGCCCTTCTTCTCCTCCCTTCTCCGTTCATCTCTCGCAGATCCACTCGTGTTCCACCTCTCAATTTCTCTGTACTTTCAAAGATTGCTCTTCTTGGACTAATAGGTTCATCTTCGCAGATTATGGGATACACAGGAATCAATTACAGTTCTCCTACTCTTGCTTCCGCCATCAGCAACCTTGTTCCTGCTTTCACTTTCATTCTTGCCATCATTTTCAGGATGGAGAAAGTGGTATTGAAAAGCAATAGCAGTCAAGCAAAAGTGATGGGCACCATAATATCAATATCAGGTGCATTTGTGGTCACATTTTACAAGGGTCCAAGGATCATATTCTCTTCAGCACCCATTTCTCTTTCACTTCATCACCATCCACTACTATCCTCTTCAGATTCTAATTGGATCATTGGCAGTCTTCTCTTGACTGCTGAATATATCTTGGTTCCACTTTGGTACATTGTTCAGACAAAAATAATGAAGGAATACCCAGAAGAGGCAACAGTGATCTTCTTCTACAACTTAAATGTGGCCATCATAGCTACAGCTGTAGGTGTGATTTTTGAGACAGATCCAAGTGCTTGGATTTTGAGGCAAAATACAGCATTGGCCTCTGTTTTATGCTCTGGACTATTTGGATCATGTTTAAATAATACAGTTCATACATGGGCACTCCGCTTGAAAGGGCCAGTGTTCGTTGCTATGTTTAAGCCGTTGTCCATCGTTGTCGCTATCGTAATGGGTGTTCTGTTTCTTGGTGATTCTCTATATCTTGGAAGTGTTATTGGAGCATCCATAATATCCATAGGGTTTTATACTGTAATGTGGGGAAAAGCAAAAGAAGAAATGGGTGTTGGAGAAGAAAAAGAAGAAGGCCATAGCCATAATCTTGATGGTAACAAGGAATCAAATGAAGATCAGAGAGTACCTCTTCTTGGAAGCTACAACACACAGAGATACAGTGCAGACCATGTATGA | 1131 | 42.62 | MAVSGRSLMEGVLPFPAMMAMECINVGLNTLFKAAAAAGMSHHVFVVYSYSFAALLLLPSPFISRRSTRVPPLNFSVLSKIALLGLIGSSSQIMGYTGINYSSPTLASAISNLVPAFTFILAIIFRMEKVVLKSNSSQAKVMGTIISISGAFVVTFYKGPRIIFSSAPISLSLHHHPLLSSSDSNWIIGSLLLTAEYILVPLWYIVQTKIMKEYPEEATVIFFYNLNVAIIATAVGVIFETDPSAWILRQNTALASVLCSGLFGSCLNNTVHTWALRLKGPVFVAMFKPLSIVVAIVMGVLFLGDSLYLGSVIGASIISIGFYTVMWGKAKEEMGVGEEKEEGHSHNLDGNKESNEDQRVPLLGSYNTQRYSADHV | 376 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
2 | 21295930 | 21300722 | - | Lsi02G015440.1 | Lsi02g01544 | 656286 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lsi02g01544 | 376 | MobiDBLite | consensus disorder prediction | 336 | 356 | - | - | |
Lsi02g01544 | 376 | Pfam | EamA-like transporter family | 25 | 155 | IPR000620 | GO:0016020|GO:0016021 | |
Lsi02g01544 | 376 | Pfam | EamA-like transporter family | 199 | 326 | IPR000620 | GO:0016020|GO:0016021 | |
Lsi02g01544 | 376 | PANTHER | WAT1-RELATED PROTEIN | 11 | 346 | IPR030184 | GO:0016021|GO:0022857 | |
Lsi02g01544 | 376 | MobiDBLite | consensus disorder prediction | 336 | 359 | - | - | |
Lsi02g01544 | 376 | SUPERFAMILY | Multidrug resistance efflux transporter EmrE | 51 | 158 | - | - | |
Lsi02g01544 | 376 | SUPERFAMILY | Multidrug resistance efflux transporter EmrE | 246 | 330 | - | - | |
Lsi02g01544 | 376 | PANTHER | WAT1-RELATED PROTEIN | 11 | 346 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lsi02g01544 | Lsi-Chr2:21295930 | Lsi03g01416 | Lsi-Chr3:25111457 | 8.27E-86 | dispersed | |
Lsi02g01547 | Lsi-Chr2:21326974 | Lsi02g01544 | Lsi-Chr2:21295930 | 8.33E-49 | dispersed | |
Lsi02g01544 | Lsi-Chr2:21295930 | Lsi02g01545 | Lsi-Chr2:21306261 | 3.32E-52 | tandem | |
Lsi02g01544 | Lsi-Chr2:21295930 | Lsi04g00524 | Lsi-Chr4:4839283 | 1.45E-63 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lsi02g01544 | - | - | csv:101208880 | 643.654 |