Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi02g01554 ATGGATACGAGCTTGTTCTGGGGTCATCCTGAAAAGAGAGATTCATGGAGGACAATTTTCACTTTAGCTTATCAGAGTTTGGGAGTTGTTTATGGGGATTTAAGCACTTCTCCTTTGTATGTGTACAAAAGCACTTTTGCAGAGAATCTTCAGCATTCTGAGACTAATGAGGAGGTTTATGGGGTTCTTTGCTTTGTGTTTTGGACTTTGACACTTATCCCTTTACTTAAATATGTGTTTATAGTTCTTAGAGCTGATGATAATGGTGAAGGGGGAACTTTTGCTCTGTATTCATTGCTCTGTCGCCATGCCCGGTTGAGCTCCCTCCCAAATCACCAACTAGCAGATGAGGAGCTTTCTGCATATACAATTGACAGGCCTCAAACTGAAAACACTACTAATTTTAGTTTTAGTAATTGTCTGAAATCAACTTTGGAGAAATGTAAAGTTCTGCAAAAAATGTTGCTTGTTCTTGCTTTGATTGGGACTTGCATGGTTATTGGAGATGGAGTTCTCACACCAGCAATCTCAGTTTTTTCAGCTGTTTCTGGGCTTGAGTTATCCATGGCTAAGGAACATCACCAGTATATTGAAGTCCCTCTAGCGTGTGGCATATTGGTATTCTTATTTGCATTGCAACACTATGGAACGCATCAGGTCGGGTTCCTGTTTGCTCCAGTTGTTATTGTATGGCTTCTGTGTATCAGTGCCATTGGTTTGTACAATATCTTCTATTGGAATCCCCTGGTTTACAAAGCACTGTCCCCATACTACATGTATAAGTTCTTGAAAAAAACCAAAAAGCAAGGTTGGATGGCATTGGGCGGAATCCTCTTGTGTATAACAGGCTCAGAAGCTATGTTTGCTGATCTTGGGCACTTCTCACAGTTTTCTATCAAGCTTGCTTTCACTTTTGCGGTTTATCCATCCTTAGTTCTTGCATACATGGGACAAGCTGCTTATCTTTCTAAGCATCACAATCTCGACAACGACTATCGGATCGGATTCTATGTTTCTGTTCCCGAGAAGGTAAGATGGCCAGTTCTTGCAATAGCAATACTTGCAGCAGTTGTGGGTAGTCAAGCGATCATCACTGGCACGTTTTCAATCATCAAACAATGTTCTGCTTTGGGTTGTTTTCCGAGGGTAAAGATCATTCATACATCTTCGAAAATACACGGCCAGATTTACATTCCCTTGATCAACTGGATACTAATGATATTATGTTTGGCTGTTACCATTGGGTTTAGAGACACAAAACGACTAGGCAATGCAGCAGGGTTGGCGGTTATTACCGTTATGCTTGTCTCGACGTGTCTAATGTCACTCGTCATTGTATTATGTTGGCGTAAAAGTGTGTTGCTGGCCATAGCCTTCATACTCTTCTTTGGCTCCATAGAAGCTCTCTACTTCTCTGCTTCTCTTATTAAGTTCTTTGAAGGGGCTTGGGTTCCTATTGTTCTTTCATTGACCTTCCTTGTGGTCATGTATGTTTGGCACTATGGCACTGTGAAGAAATATGAAGCTGATGTTGAAAACAAAGTCCCTATAAATTGGCTCCTCAGTATAGGACCCAAAATTGGGATCGTTCGAGTTCGAGGGATCGGCCTTGTACATACCGAACTCGTTTCGGGGATCCCTGCCATTTTCTCTCATTTTGTCACCAACCTTCCAGCCTTTCACCAAATTCTAGTCTTCCTCTGCATCAAATCTGTCACAGTGCCTCATGTGAGGCCTGAGGAAAGGTTTTTAGTTGGAAGAGTTGGGCCAAAGGAGTATCGACTCTATCGTTGCATCGCACGGTATGGCTACCGTGATATGCACAAAGACGACTTGGAGTTTGAGAGAGATCTTGCTTGCAGCATTGCAGAATTCATACGGTCTGAGAGAACAGAATGCAACAATTTTAGACACGAAGACATGGACGACAATGACAATGAAAGAATGACAGTGATTGGGACTTCATCAACTCAACTAGACGGTATACAAATGTGTGAAAATGAAACGTACGCTTCGCCAATCATTGGAACTTCAGAGATAATAAAGTCGGAGCAGTTGAGGAAAAGAGTAAGATTCGTTCTTCCCGAGAGTCCGAAAATGAACATGGATACGAGGGGAGAATTGCAAGAGTTGATGGAGGCAAGGGAGGCAGGAATAGCATTTATAATGGGACATTCATATGTGAAGGCAAAGAAAGGATCAGGTTGGATGAAGAAGCTTGTGATTAATTATGGATATGATTTCTTGAGGAAAAATTCAAGAGGGCCATCTTATGCTTTGAGCATTCCTTATGCTTCAACTCTTGAGGTTGGTATGGTTTATTATGTTTAA 2331 41.66 MDTSLFWGHPEKRDSWRTIFTLAYQSLGVVYGDLSTSPLYVYKSTFAENLQHSETNEEVYGVLCFVFWTLTLIPLLKYVFIVLRADDNGEGGTFALYSLLCRHARLSSLPNHQLADEELSAYTIDRPQTENTTNFSFSNCLKSTLEKCKVLQKMLLVLALIGTCMVIGDGVLTPAISVFSAVSGLELSMAKEHHQYIEVPLACGILVFLFALQHYGTHQVGFLFAPVVIVWLLCISAIGLYNIFYWNPLVYKALSPYYMYKFLKKTKKQGWMALGGILLCITGSEAMFADLGHFSQFSIKLAFTFAVYPSLVLAYMGQAAYLSKHHNLDNDYRIGFYVSVPEKVRWPVLAIAILAAVVGSQAIITGTFSIIKQCSALGCFPRVKIIHTSSKIHGQIYIPLINWILMILCLAVTIGFRDTKRLGNAAGLAVITVMLVSTCLMSLVIVLCWRKSVLLAIAFILFFGSIEALYFSASLIKFFEGAWVPIVLSLTFLVVMYVWHYGTVKKYEADVENKVPINWLLSIGPKIGIVRVRGIGLVHTELVSGIPAIFSHFVTNLPAFHQILVFLCIKSVTVPHVRPEERFLVGRVGPKEYRLYRCIARYGYRDMHKDDLEFERDLACSIAEFIRSERTECNNFRHEDMDDNDNERMTVIGTSSTQLDGIQMCENETYASPIIGTSEIIKSEQLRKRVRFVLPESPKMNMDTRGELQELMEAREAGIAFIMGHSYVKAKKGSGWMKKLVINYGYDFLRKNSRGPSYALSIPYASTLEVGMVYYV 776
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
2 21392597 21396930 - Lsi02G015540.1 Lsi02g01554 656296
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Lsi02g01554 776 TIGRFAM kup: potassium uptake protein 22 776 IPR003855 GO:0015079|GO:0016020|GO:0071805
Lsi02g01554 776 Pfam K+ potassium transporter 24 606 IPR003855 GO:0015079|GO:0016020|GO:0071805
Lsi02g01554 776 PANTHER OSMOTIC STRESS POTASSIUM TRANSPORTER 10 775 IPR003855 GO:0015079|GO:0016020|GO:0071805
Lsi02g01554 776 PANTHER POTASSIUM TRANSPORTER 6 10 775 - -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g01264 Lsi-Chr2:16775702 Lsi02g01554 Lsi-Chr2:21392597 0 dispersed
Lsi02g01554 Lsi-Chr2:21392597 Lsi04g01031 Lsi-Chr4:11824195 0 dispersed
Lsi05g00431 Lsi-Chr5:5469034 Lsi02g01554 Lsi-Chr2:21392597 6.93E-109 dispersed
Lsi11g00079 Lsi-Chr11:846089 Lsi02g01554 Lsi-Chr2:21392597 0 transposed
Lsi02g01554 Lsi-Chr2:21392597 Lsi03g01412 Lsi-Chr3:25070978 0 wgd
Lsi02g01554 Lsi-Chr2:21392597 Lsi04g00532 Lsi-Chr4:4919570 0 wgd
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi02g01554 K03549 - csv:101218141 1507.66