Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi02g01555 ATGATGTCGGACGGTTTGATCTTCAACCGGTCTCCAGGTCACGCCAACATGTTGTTTTTCGGAAGTGGTGATTCCATTCTTCGAGGACCAAGTTTCACGATGGGGATGGAGGAAACTTCAAAGAGGCGACCCTTTTTCAGCTCTCCAGATGACCTGTTTGACGATGACTACTACGATGACCAGCCACCTGAGAAGAAGCGCCGGCTAACTCAAGAGCAGGTGCATCTGCTGGAGATTAGCTTTGAGTCAGAAAACAAACTGGAGCCAGAGCGCAAGACTGAGCTAGCAAAGAAGCTGGGTCTGCAGCCAAGGCAAGTGGCTGTGTGGTTTCAAAACCGCCGAGCTAGATGGAAGACAAAGCAGCTTGAAAGGGACTATGATCTTCTCAAATCTTCATATGATTCCTTTCGTTCTAGCTACGACTTTATTGCTAAGGAGAATGAAAGGCTCAAAGCCGAGGTAGCTTCTTTAAGTGAGAAACTTCAAGCTAAAGAAGTGGTTGAATCATCGTTTCAAGCTAAGAATCCTGATCCCATTCTTGAGGATCAACTCCTTGTTCCTGTTGTGCAACATGGCATTAAGATTGAGGACCGCCATAGTTGCAGGAGCAATGGTAGCGCTGTGCTGGATGAGGATGGTCCTCAACTCTTAGACAGTGGGGATTCGTACCTCCTGAGCAATGACTATGATGGCTGTGTTTTGCCAGTTTTTGGAGTGAGCTCGGAAGAGGAAGATGGTAGTGACGATGGTCAGGGTTACTTCTCGGATGTTTATACAACAGTCGATCAGCAGACTCACGAGGGAGAGCCTTTGACCTGGTGGGACTGGACGTCGTAA 837 47.91 MMSDGLIFNRSPGHANMLFFGSGDSILRGPSFTMGMEETSKRRPFFSSPDDLFDDDYYDDQPPEKKRRLTQEQVHLLEISFESENKLEPERKTELAKKLGLQPRQVAVWFQNRRARWKTKQLERDYDLLKSSYDSFRSSYDFIAKENERLKAEVASLSEKLQAKEVVESSFQAKNPDPILEDQLLVPVVQHGIKIEDRHSCRSNGSAVLDEDGPQLLDSGDSYLLSNDYDGCVLPVFGVSSEEEDGSDDGQGYFSDVYTTVDQQTHEGEPLTWWDWTS 278
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 21409572 21411869 - Lsi02G015550.1 Lsi02g01555 656297

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi02g01555 278 Pfam Homeodomain 65 118 IPR001356 GO:0003677
Lsi02g01555 278 Gene3D - 58 126 - -
Lsi02g01555 278 Pfam Homeobox associated leucine zipper 120 162 IPR003106 GO:0006355|GO:0043565
Lsi02g01555 278 PRINTS Lambda-repressor HTH signature 91 100 IPR000047 GO:0003677
Lsi02g01555 278 PRINTS Lambda-repressor HTH signature 100 116 IPR000047 GO:0003677
Lsi02g01555 278 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT5 1 261 - -
Lsi02g01555 278 ProSitePatterns 'Homeobox' domain signature. 95 118 IPR017970 GO:0000981|GO:0006355
Lsi02g01555 278 Coils Coil 140 167 - -
Lsi02g01555 278 CDD homeodomain 65 121 IPR001356 GO:0003677
Lsi02g01555 278 ProSiteProfiles 'Homeobox' domain profile. 60 120 IPR001356 GO:0003677
Lsi02g01555 278 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 1 261 IPR045224 GO:0003700
Lsi02g01555 278 SUPERFAMILY Homeodomain-like 48 122 IPR009057 -
Lsi02g01555 278 SMART HOX_1 63 124 IPR001356 GO:0003677
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi02g01555 K09338 HD-ZIP; homeobox-leucine zipper protein - csv:101210106 499.975
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g01555 Lsi-Chr2:21409572 Lsi05g00818 Lsi-Chr5:12772727 1.06E-36 dispersed
Lsi01g00699 Lsi-Chr1:5567910 Lsi02g01555 Lsi-Chr2:21409572 1.20E-26 transposed
Lsi02g01555 Lsi-Chr2:21409572 Lsi03g01401 Lsi-Chr3:24962142 2.19E-83 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi14g1377 Blo10g00465 Blo11g00670 . . . . . Bma13g00523 Cmo14g00654 Cmo11g01698 Cma11g01423 Cma14g00644 Car11g01382 Car14g00587 . Cpe03g00557 Cpe13g00908 Bhi06g00499 . . . . . . Cla10g01364 Cam10g1244 Cec10g1449 Cco10g1420 Clacu10g1424 Cmu10g2192 Cre10g1576 . . Cone2ag0135 Cone16ag0919 Lsi02g01555 Csa05g02906 Chy04g01468 Cme04g01900 . . . . Bpe09g00488 Bpe11g01552 . . . Cmo04g02845 Cmo15g00340 Cma04g02715 Cma15g00329 Car04g02619 Car15g00313 . Cpe01g02355 Bhi11g01661 . . . Hepe02g1854 . . Cla09g01845 Cam09g1937 Cec09g2002 Cco09g2096 . . Cre01g0567 . Csa03g03923 Chy09g00328 Cme09g00366
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lsi09g01939 CCT,ECH 59 601 Homeobox Transcription Factor Family AT4G00730 63.0 2.8e-173 605.5
Lsi05g01248 . 43 527 Homeobox Transcription Factor Family AT4G00730 55.9 3.8e-138 488.8
Lsi05g02010 CCT,ECH 15 488 Homeobox Transcription Factor Family AT4G00730 55.5 1.3e-135 480.3
Lsi03g01401 . 1 280 Homeobox Transcription Factor Family AT3G01470 55.5 6.0e-57 218.0
Lsi02g01555 . 1 276 Homeobox Transcription Factor Family AT3G01470 52.0 3.4e-52 202.2
Lsi07g00510 . 69 763 Homeobox Transcription Factor Family AT1G79840 58.1 1.6e-215 746.1
Lsi04g00442 . 4 304 Homeobox Transcription Factor Family AT1G69780 64.1 1.7e-81 299.7
Lsi01g00085 . 4 847 Homeobox Transcription Factor Family AT2G34710 79.3 0.0e+00 1358.6
Lsi02g00942 . 4 850 Homeobox Transcription Factor Family AT2G34710 76.4 0.0e+00 1290.4
Lsi02g02997 . 3 995 Homeobox Transcription Factor Family AT2G34710 55.9 1.1e-301 1032.7
Lsi10g01265 . 23 773 Homeobox Transcription Factor Family AT2G34710 63.9 5.4e-298 1020.4
Lsi04g02325 . 1 911 Homeobox Transcription Factor Family AT2G34710 55.0 9.0e-277 949.9
Lsi03g00048 . 8 770 Homeobox Transcription Factor Family AT2G34710 60.5 1.2e-252 869.8
Lsi02g02997 . 1 947 Homeobox Transcription Factor Family AT1G52150 71.5 0.0e+00 1276.9
Lsi04g02325 . 7 863 Homeobox Transcription Factor Family AT1G52150 65.0 0.0e+00 1088.9
Lsi01g00085 . 7 804 Homeobox Transcription Factor Family AT1G52150 66.5 1.8e-303 1038.5
Lsi02g00942 . 14 802 Homeobox Transcription Factor Family AT1G52150 63.6 1.0e-282 969.5
Lsi10g01265 . 23 724 Homeobox Transcription Factor Family AT1G52150 62.1 2.0e-262 902.1
Lsi03g00048 . 18 772 Homeobox Transcription Factor Family AT1G52150 57.7 1.4e-234 809.7
Lsi07g01279 . 1 277 Homeobox Transcription Factor Family AT4G16780 62.1 1.9e-82 302.8
Lsi05g02181 . 48 329 Homeobox Transcription Factor Family AT4G16780 56.3 6.0e-68 254.6
Lsi01g00857 . 59 227 Homeobox Transcription Factor Family AT4G16780 63.2 4.3e-50 195.3
Lsi02g02612 . 157 280 Homeobox Transcription Factor Family AT4G16780 76.8 5.8e-47 184.9
Lsi05g00810 . 51 244 Homeobox Transcription Factor Family AT4G16780 57.9 5.8e-47 184.9
Lsi03g01746 . 216 337 Homeobox Transcription Factor Family AT4G16780 77.2 3.2e-45 179.1
Lsi06g01229 . 139 255 Homeobox Transcription Factor Family AT4G16780 69.2 2.4e-40 162.9
Lsi04g01446 . 118 237 Homeobox Transcription Factor Family AT4G16780 69.7 5.9e-39 158.3
Lsi05g02181 . 87 334 Homeobox Transcription Factor Family AT2G44910 63.0 9.7e-67 250.8
Lsi07g01279 . 25 249 Homeobox Transcription Factor Family AT2G44910 62.3 1.3e-66 250.4
Lsi02g02612 . 165 291 Homeobox Transcription Factor Family AT2G44910 78.1 2.7e-48 189.5
Lsi03g01746 . 122 335 Homeobox Transcription Factor Family AT2G44910 58.6 5.9e-48 188.3
Lsi01g00857 . 70 234 Homeobox Transcription Factor Family AT2G44910 60.8 1.7e-47 186.8
Lsi05g00810 . 126 244 Homeobox Transcription Factor Family AT2G44910 73.3 2.0e-43 173.3
Lsi06g01229 . 139 263 Homeobox Transcription Factor Family AT2G44910 66.4 9.2e-41 164.5
Lsi04g01446 . 121 237 Homeobox Transcription Factor Family AT2G44910 67.5 2.8e-37 152.9
Lsi02g02997 . 9 995 Homeobox Transcription Factor Family AT4G32880 66.0 0.0e+00 1241.9
Lsi04g02325 . 18 911 Homeobox Transcription Factor Family AT4G32880 67.4 0.0e+00 1204.9
Lsi01g00085 . 14 847 Homeobox Transcription Factor Family AT4G32880 66.1 0.0e+00 1088.9
Lsi02g00942 . 14 850 Homeobox Transcription Factor Family AT4G32880 62.6 7.9e-302 1033.1
Lsi10g01265 . 14 773 Homeobox Transcription Factor Family AT4G32880 59.7 1.2e-273 939.5
Lsi03g00048 . 12 772 Homeobox Transcription Factor Family AT4G32880 57.6 1.6e-238 822.8
Lsi01g00085 . 7 847 Homeobox Transcription Factor Family AT1G30490 78.6 0.0e+00 1322.0
Lsi02g00942 . 7 850 Homeobox Transcription Factor Family AT1G30490 74.8 0.0e+00 1237.6
Lsi02g02997 . 2 995 Homeobox Transcription Factor Family AT1G30490 54.2 8.0e-286 979.9
Lsi10g01265 . 5 773 Homeobox Transcription Factor Family AT1G30490 61.1 3.4e-284 974.5
Lsi04g02325 . 2 911 Homeobox Transcription Factor Family AT1G30490 52.9 9.8e-260 893.3
Lsi03g00048 . 5 770 Homeobox Transcription Factor Family AT1G30490 59.4 7.3e-247 850.5
Lsi10g00143 . 53 772 Homeobox Transcription Factor Family AT4G21750 63.1 4.7e-253 870.9
Lsi02g00624 CCT 7 662 Homeobox Transcription Factor Family AT4G21750 58.0 3.8e-218 755.0
Lsi01g00412 CCT 20 544 Homeobox Transcription Factor Family AT4G21750 70.2 6.9e-212 734.2
Lsi11g01463 . 88 623 Homeobox Transcription Factor Family AT4G21750 65.8 1.5e-211 733.0
Lsi09g01939 CCT,ECH 93 853 Homeobox Transcription Factor Family AT4G21750 53.2 5.5e-209 724.5
Lsi05g01248 . 50 780 Homeobox Transcription Factor Family AT4G21750 50.1 1.3e-189 660.2
Lsi07g00984 . 1 139 Homeobox Transcription Factor Family AT4G21750 63.7 7.3e-44 176.0
Lsi03g01817 . 253 453 Homeobox Transcription Factor Family AT5G41410 55.6 3.1e-61 233.4
Lsi10g00586 . 259 472 Homeobox Transcription Factor Family AT5G41410 54.5 9.0e-37 152.1
Lsi03g00020 . 520 695 Homeobox Transcription Factor Family AT1G75410 51.1 4.0e-41 166.0
Lsi01g01043 . 298 721 Homeobox Transcription Factor Family AT2G23760 58.0 2.7e-98 356.7
Lsi10g00586 . 251 476 Homeobox Transcription Factor Family AT2G23760 68.2 7.1e-75 278.9
Lsi07g01279 . 1 277 Homeobox Transcription Factor Family AT4G17460 56.8 2.5e-74 275.8
Lsi05g02181 . 43 313 Homeobox Transcription Factor Family AT4G17460 55.9 3.4e-63 238.8
Lsi01g00857 . 1 229 Homeobox Transcription Factor Family AT4G17460 52.8 2.4e-45 179.5
Lsi02g02612 . 150 295 Homeobox Transcription Factor Family AT4G17460 69.5 5.4e-45 178.3
Lsi03g01746 . 216 327 Homeobox Transcription Factor Family AT4G17460 78.8 4.8e-41 165.2
Lsi07g01279 . 1 277 Homeobox Transcription Factor Family AT5G47370 58.8 3.9e-75 278.5
Lsi05g02181 . 43 329 Homeobox Transcription Factor Family AT5G47370 55.3 7.6e-63 237.7
Lsi02g02612 . 72 286 Homeobox Transcription Factor Family AT5G47370 53.5 1.1e-48 190.7
Lsi01g00857 . 1 229 Homeobox Transcription Factor Family AT5G47370 50.2 1.4e-45 180.3
Lsi03g01746 . 216 326 Homeobox Transcription Factor Family AT5G47370 82.1 5.1e-43 171.8
Lsi05g00810 . 109 277 Homeobox Transcription Factor Family AT5G47370 60.1 1.5e-42 170.2
Lsi06g01229 . 139 254 Homeobox Transcription Factor Family AT5G47370 68.1 1.6e-36 150.2
Lsi01g00857 . 1 263 Homeobox Transcription Factor Family AT4G37790 64.0 1.0e-83 307.0
Lsi05g00810 . 1 277 Homeobox Transcription Factor Family AT4G37790 59.4 9.4e-74 273.9
Lsi04g01446 . 1 280 Homeobox Transcription Factor Family AT4G37790 51.9 1.4e-56 216.9
Lsi03g01746 . 184 349 Homeobox Transcription Factor Family AT4G37790 64.3 5.0e-51 198.4
Lsi07g01279 . 4 228 Homeobox Transcription Factor Family AT4G37790 50.8 8.5e-51 197.6
Lsi02g02612 . 152 311 Homeobox Transcription Factor Family AT4G37790 63.2 1.6e-49 193.4
Lsi05g02181 . 182 296 Homeobox Transcription Factor Family AT4G37790 78.3 1.4e-45 180.3
Lsi06g01229 . 139 254 Homeobox Transcription Factor Family AT4G37790 72.4 1.6e-41 166.8
Lsi05g02181 . 43 340 Homeobox Transcription Factor Family AT3G60390 57.8 5.6e-75 278.1
Lsi07g01279 . 2 268 Homeobox Transcription Factor Family AT3G60390 55.4 1.9e-70 263.1
Lsi02g02612 . 144 289 Homeobox Transcription Factor Family AT3G60390 70.4 2.4e-49 193.0
Lsi01g00857 . 70 227 Homeobox Transcription Factor Family AT3G60390 63.1 4.5e-48 188.7
Lsi05g00810 . 96 244 Homeobox Transcription Factor Family AT3G60390 65.8 4.2e-46 182.2
Lsi03g01746 . 216 338 Homeobox Transcription Factor Family AT3G60390 75.8 5.5e-46 181.8
Lsi06g01229 . 139 257 Homeobox Transcription Factor Family AT3G60390 68.9 5.3e-41 165.2
Lsi04g01446 . 116 237 Homeobox Transcription Factor Family AT3G60390 64.8 4.2e-38 155.6
Lsi01g00857 . 1 263 Homeobox Transcription Factor Family AT2G22800 60.8 7.6e-76 280.8
Lsi05g00810 . 1 277 Homeobox Transcription Factor Family AT2G22800 56.5 2.8e-70 262.3
Lsi04g01446 . 1 280 Homeobox Transcription Factor Family AT2G22800 52.0 4.9e-59 224.9
Lsi02g02612 . 149 311 Homeobox Transcription Factor Family AT2G22800 59.9 2.7e-49 192.6
Lsi07g01279 . 4 228 Homeobox Transcription Factor Family AT2G22800 52.8 6.0e-49 191.4
Lsi03g01746 . 216 326 Homeobox Transcription Factor Family AT2G22800 79.3 1.6e-46 183.3
Lsi05g02181 . 182 296 Homeobox Transcription Factor Family AT2G22800 74.8 7.6e-44 174.5
Lsi06g01229 . 136 254 Homeobox Transcription Factor Family AT2G22800 69.7 5.7e-39 158.3
Lsi09g01939 CCT,ECH 1 854 Homeobox Transcription Factor Family AT3G61150 62.0 1.3e-272 936.0
Lsi05g01248 . 55 781 Homeobox Transcription Factor Family AT3G61150 58.5 1.3e-232 803.1
Lsi05g02010 CCT,ECH 38 732 Homeobox Transcription Factor Family AT3G61150 59.5 9.2e-231 797.0
Lsi01g00412 CCT 64 544 Homeobox Transcription Factor Family AT3G61150 52.3 7.8e-137 485.0
Lsi04g01445 CCT 45 354 Homeobox Transcription Factor Family AT4G08150 65.4 4.7e-111 398.3
Lsi08g01559 CCT 112 396 Homeobox Transcription Factor Family AT4G08150 65.4 8.3e-100 360.9
Lsi01g00456 . 97 347 Homeobox Transcription Factor Family AT4G08150 57.4 2.2e-76 283.1
Lsi11g01422 CCT,ECH 90 321 Homeobox Transcription Factor Family AT4G08150 59.2 1.6e-71 266.9
Lsi04g02098 . 126 493 Homeobox Transcription Factor Family AT5G25220 71.2 7.1e-134 474.2
Lsi08g01229 . 175 416 Homeobox Transcription Factor Family AT5G25220 72.0 9.4e-110 394.0
Lsi04g02098 . 167 492 Homeobox Transcription Factor Family AT5G11060 73.1 1.6e-127 453.0
Lsi08g01229 . 163 415 Homeobox Transcription Factor Family AT5G11060 69.2 8.5e-105 377.5
Lsi04g02098 . 77 478 Homeobox Transcription Factor Family AT4G32040 53.7 3.0e-107 385.6
Lsi04g00565 . 1 430 Homeobox Transcription Factor Family AT1G23380 52.2 2.6e-107 385.6
Lsi11g00638 . 59 297 Homeobox Transcription Factor Family AT1G23380 53.1 3.1e-68 255.8
Lsi04g01445 CCT 104 329 Homeobox Transcription Factor Family AT1G23380 50.8 9.1e-60 227.6
Lsi08g01663 . 11 185 Homeobox Transcription Factor Family AT1G23380 56.3 5.2e-47 185.3
Lsi04g02098 . 176 492 Homeobox Transcription Factor Family AT1G62990 57.6 1.6e-92 336.3
Lsi08g01229 . 175 415 Homeobox Transcription Factor Family AT1G62990 55.5 1.6e-76 283.1
Lsi09g00319 . 1 148 Homeobox Transcription Factor Family AT1G62990 69.6 9.2e-48 187.6
Lsi04g00442 . 4 304 Homeobox Transcription Factor Family AT1G26960 54.7 6.8e-63 237.7
Lsi02g01495 . 1 293 Homeobox Transcription Factor Family AT3G01220 52.3 6.7e-51 198.0
Lsi02g00024 . 1 795 Homeobox Transcription Factor Family AT1G17920 53.2 3.2e-208 721.8
Lsi02g00024 . 20 794 Homeobox Transcription Factor Family AT1G73360 56.4 6.8e-225 777.3
Lsi05g00276 . 792 1470 Homeobox Transcription Factor Family AT1G73360 51.6 2.9e-191 665.6
Lsi10g00143 . 77 772 Homeobox Transcription Factor Family AT1G05230 72.8 1.4e-275 945.7
Lsi11g01463 . 49 622 Homeobox Transcription Factor Family AT1G05230 60.9 2.7e-226 781.9
Lsi09g01939 CCT,ECH 111 854 Homeobox Transcription Factor Family AT1G05230 54.4 4.4e-208 721.5
Lsi01g00412 CCT 20 547 Homeobox Transcription Factor Family AT1G05230 65.7 8.0e-194 674.1
Lsi02g00624 CCT 59 662 Homeobox Transcription Factor Family AT1G05230 54.6 8.9e-193 670.6
Lsi05g02010 CCT,ECH 104 733 Homeobox Transcription Factor Family AT1G05230 51.7 1.5e-171 600.1
Lsi07g00984 . 1 139 Homeobox Transcription Factor Family AT1G05230 80.4 4.8e-53 206.5
Lsi01g00699 . 9 216 Homeobox Transcription Factor Family AT2G18550 50.5 4.0e-43 171.8
Lsi10g00143 . 93 772 Homeobox Transcription Factor Family AT2G32370 51.8 2.2e-183 639.4
Lsi05g01248 . 33 782 Homeobox Transcription Factor Family AT5G52170 51.5 6.0e-199 691.0
Lsi09g01939 CCT,ECH 105 851 Homeobox Transcription Factor Family AT5G52170 50.6 4.0e-195 678.3
Lsi05g02010 CCT,ECH 104 731 Homeobox Transcription Factor Family AT5G52170 51.2 1.6e-175 613.2
Lsi01g00699 . 61 214 Homeobox Transcription Factor Family AT5G66700 55.8 4.0e-38 155.2
Lsi01g00290 . 10 1510 Homeobox Transcription Factor Family AT1G28420 51.9 0.0e+00 1147.1
Lsi03g01817 . 181 454 Homeobox Transcription Factor Family AT2G16400 57.6 1.9e-77 287.0
Lsi02g02721 . 186 478 Homeobox Transcription Factor Family AT2G16400 52.9 2.1e-73 273.5
Lsi03g02150 CCT,ECH 163 326 Homeobox Transcription Factor Family AT2G35940 53.7 3.3e-48 190.3
Lsi01g01043 . 413 574 Homeobox Transcription Factor Family AT4G34610 63.6 1.2e-53 208.0
Lsi03g00020 . 549 746 Homeobox Transcription Factor Family AT4G34610 53.0 8.4e-47 185.3
Lsi10g00143 . 53 770 Homeobox Transcription Factor Family AT4G04890 65.1 1.4e-257 885.9
Lsi02g00624 CCT 32 662 Homeobox Transcription Factor Family AT4G04890 59.0 1.1e-219 760.0
Lsi11g01463 . 88 622 Homeobox Transcription Factor Family AT4G04890 67.5 4.2e-214 741.5
Lsi01g00412 CCT 5 544 Homeobox Transcription Factor Family AT4G04890 71.5 4.2e-214 741.5
Lsi09g01939 CCT,ECH 105 853 Homeobox Transcription Factor Family AT4G04890 54.0 3.6e-213 738.4
Lsi05g01248 . 50 780 Homeobox Transcription Factor Family AT4G04890 51.3 1.8e-196 682.9
Lsi05g02010 CCT,ECH 104 732 Homeobox Transcription Factor Family AT4G04890 50.7 1.6e-176 616.7
Lsi07g00984 . 1 139 Homeobox Transcription Factor Family AT4G04890 68.4 1.2e-46 185.3
Lsi06g01202 . 140 571 Homeobox Transcription Factor Family AT4G29940 60.5 3.4e-142 502.7
Lsi10g01265 . 1 773 Homeobox Transcription Factor Family AT5G60690 75.6 0.0e+00 1238.4
Lsi01g00085 . 1 847 Homeobox Transcription Factor Family AT5G60690 69.0 0.0e+00 1137.1
Lsi02g00942 . 1 850 Homeobox Transcription Factor Family AT5G60690 64.4 3.9e-314 1073.9
Lsi03g00048 . 1 768 Homeobox Transcription Factor Family AT5G60690 72.0 3.2e-311 1064.3
Lsi02g02997 . 9 995 Homeobox Transcription Factor Family AT5G60690 55.6 9.8e-292 999.6
Lsi04g02325 . 20 911 Homeobox Transcription Factor Family AT5G60690 53.8 1.0e-264 909.8
Lsi01g00456 . 86 350 Homeobox Transcription Factor Family AT1G62360 79.9 9.4e-117 417.2
Lsi11g01422 CCT,ECH 85 336 Homeobox Transcription Factor Family AT1G62360 71.3 9.4e-101 364.0
Lsi04g01445 CCT 108 333 Homeobox Transcription Factor Family AT1G62360 55.7 2.6e-66 249.6
Lsi11g00638 . 60 299 Homeobox Transcription Factor Family AT1G62360 52.0 2.1e-60 229.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004960 1 3 1 2 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 4 1 1 41
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
24844 PF00046 Homeodomain 3.40E-17 CL0123 Lsi TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi02g01555 Lsi_Chr02 FPKM 50.160549 52.624836 63.263729 64.448952 55.464016 50.377293 61.982147 46.214996 47.32 52.74976