Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi02g01555 ATGATGTCGGACGGTTTGATCTTCAACCGGTCTCCAGGTCACGCCAACATGTTGTTTTTCGGAAGTGGTGATTCCATTCTTCGAGGACCAAGTTTCACGATGGGGATGGAGGAAACTTCAAAGAGGCGACCCTTTTTCAGCTCTCCAGATGACCTGTTTGACGATGACTACTACGATGACCAGCCACCTGAGAAGAAGCGCCGGCTAACTCAAGAGCAGGTGCATCTGCTGGAGATTAGCTTTGAGTCAGAAAACAAACTGGAGCCAGAGCGCAAGACTGAGCTAGCAAAGAAGCTGGGTCTGCAGCCAAGGCAAGTGGCTGTGTGGTTTCAAAACCGCCGAGCTAGATGGAAGACAAAGCAGCTTGAAAGGGACTATGATCTTCTCAAATCTTCATATGATTCCTTTCGTTCTAGCTACGACTTTATTGCTAAGGAGAATGAAAGGCTCAAAGCCGAGGTAGCTTCTTTAAGTGAGAAACTTCAAGCTAAAGAAGTGGTTGAATCATCGTTTCAAGCTAAGAATCCTGATCCCATTCTTGAGGATCAACTCCTTGTTCCTGTTGTGCAACATGGCATTAAGATTGAGGACCGCCATAGTTGCAGGAGCAATGGTAGCGCTGTGCTGGATGAGGATGGTCCTCAACTCTTAGACAGTGGGGATTCGTACCTCCTGAGCAATGACTATGATGGCTGTGTTTTGCCAGTTTTTGGAGTGAGCTCGGAAGAGGAAGATGGTAGTGACGATGGTCAGGGTTACTTCTCGGATGTTTATACAACAGTCGATCAGCAGACTCACGAGGGAGAGCCTTTGACCTGGTGGGACTGGACGTCGTAA 837 47.91 MMSDGLIFNRSPGHANMLFFGSGDSILRGPSFTMGMEETSKRRPFFSSPDDLFDDDYYDDQPPEKKRRLTQEQVHLLEISFESENKLEPERKTELAKKLGLQPRQVAVWFQNRRARWKTKQLERDYDLLKSSYDSFRSSYDFIAKENERLKAEVASLSEKLQAKEVVESSFQAKNPDPILEDQLLVPVVQHGIKIEDRHSCRSNGSAVLDEDGPQLLDSGDSYLLSNDYDGCVLPVFGVSSEEEDGSDDGQGYFSDVYTTVDQQTHEGEPLTWWDWTS 278
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 21409572 21411869 - Lsi02G015550.1 Lsi02g01555 656297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi02g01555 278 Pfam Homeodomain 65 118 IPR001356 GO:0003677
Lsi02g01555 278 Gene3D - 58 126 - -
Lsi02g01555 278 Pfam Homeobox associated leucine zipper 120 162 IPR003106 GO:0006355|GO:0043565
Lsi02g01555 278 PRINTS Lambda-repressor HTH signature 91 100 IPR000047 GO:0003677
Lsi02g01555 278 PRINTS Lambda-repressor HTH signature 100 116 IPR000047 GO:0003677
Lsi02g01555 278 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT5 1 261 - -
Lsi02g01555 278 ProSitePatterns 'Homeobox' domain signature. 95 118 IPR017970 GO:0000981|GO:0006355
Lsi02g01555 278 Coils Coil 140 167 - -
Lsi02g01555 278 CDD homeodomain 65 121 IPR001356 GO:0003677
Lsi02g01555 278 ProSiteProfiles 'Homeobox' domain profile. 60 120 IPR001356 GO:0003677
Lsi02g01555 278 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 1 261 IPR045224 GO:0003700
Lsi02g01555 278 SUPERFAMILY Homeodomain-like 48 122 IPR009057 -
Lsi02g01555 278 SMART HOX_1 63 124 IPR001356 GO:0003677
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g01555 Lsi-Chr2:21409572 Lsi05g00818 Lsi-Chr5:12772727 1.06E-36 dispersed
Lsi01g00699 Lsi-Chr1:5567910 Lsi02g01555 Lsi-Chr2:21409572 1.20E-26 transposed
Lsi02g01555 Lsi-Chr2:21409572 Lsi03g01401 Lsi-Chr3:24962142 2.19E-83 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
24844 PF00046 Homeodomain 3.40E-17 CL0123 Lsi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi02g01555 K09338 - csv:101210106 499.975