Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi02g01561 ATGGGGCGATTTGGGAACTTGGGAAATTGTGACAAAATGGCGATGATGGAAAATGGCGGCACAAAAGGAAATGAAGCAGTGGCATTGAGTTGCACAATGCTGGGAGCTGGCAGCGATGGCTCGCTTCACACCTGCGCAAGGGTTTGCCTTATTGACCAAAATGAGTCCGTCATCTTTTCTACTTATGTTCAGCCAACCCTTCCTGTCACCAACTATAGATTTGAATCCACGGGTGTTCGTCCAGAATATTTGAGAGATGCAATGCCATTGAAGCAAGTTCAGAAGAAAATTCAAGAGTTTCTATGCAATGGAGAACCAATGTGGAAAATTCGACCTGGAGCTACAGGAAAAGCAAGGATTCTTGTGGGTCATGGTGTAGAAGAAGACCTTACACGTTTGCACATTGACTATCCTACAATCATGATAAGATACAATATTATGGAAAATGGGAAGAAAGAGGTTTATGAGGAATGTGTTGCTACAATGAGATTGTACATGAGAATGAAATCCCAAGTTCACAAGAGAGAGGACTATCCATTGGCTTCTGATCCACAAAATAAATATAACTTTGCAATTTGGAAGCAATTTGAGCTTGAGAAGATGACCCCACAACAAATGTTACAAATTTCAAGATCTGATTACTATTGTTGGTGCTTGGATTCACACCCTTAA 672 41.07 MGRFGNLGNCDKMAMMENGGTKGNEAVALSCTMLGAGSDGSLHTCARVCLIDQNESVIFSTYVQPTLPVTNYRFESTGVRPEYLRDAMPLKQVQKKIQEFLCNGEPMWKIRPGATGKARILVGHGVEEDLTRLHIDYPTIMIRYNIMENGKKEVYEECVATMRLYMRMKSQVHKREDYPLASDPQNKYNFAIWKQFELEKMTPQQMLQISRSDYYCWCLDSHP 223
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 21454077 21455982 - Lsi02G015610.1 Lsi02g01561 656303
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi02g01561 223 SUPERFAMILY Ribonuclease H-like 29 147 IPR012337 -
Lsi02g01561 223 PANTHER OS02G0709000 PROTEIN 148 221 - -
Lsi02g01561 223 PANTHER OS02G0709000 PROTEIN 3 143 - -
Lsi02g01561 223 Gene3D - 22 150 IPR036397 GO:0003676
Lsi02g01561 223 PANTHER RNA EXONUCLEASE REXO1 / RECO3 FAMILY MEMBER-RELATED 148 221 - -
Lsi02g01561 223 PANTHER RNA EXONUCLEASE REXO1 / RECO3 FAMILY MEMBER-RELATED 3 143 - -
Lsi02g01561 223 SMART exoiiiendus 25 174 IPR013520 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g02029 Lsi-Chr1:27781797 Lsi02g01561 Lsi-Chr2:21454077 4.21E-39 dispersed
Lsi02g01561 Lsi-Chr2:21454077 Lsi04g02039 Lsi-Chr4:27490055 1.01E-12 dispersed
Lsi02g01561 Lsi-Chr2:21454077 Lsi02g01562 Lsi-Chr2:21466201 1.16E-84 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi02g01561 - - csv:101218380 343.969