Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi02g01562 ATGAACCCACTTGTGCTATTTGCAAGAAACATTGTCGATCTCTTGATTCTCTTAGAGAACATCTCATTGGGCCACTGCCAAAACAAGAGTGCAAGAACATCTTTGCTACACGAGGATGCAAGTTTTGCTTGGCCATCCTTGACAGTTCTTACTCACAAAGGCTCCATCAAGAAAGATGCCAATTCTCGGCTAACTCGAGGCTCGGGCGCCGTGGCGTTAGCTTGCAAATATGTAGGTGGGGGCAGTGATGGGTCGCTGGACATATGTGCCAAGATTTGCCTTATTGATGAGAGCGAAAATGTCATCTTCTATAGCTATGTCAAGCCCATAATTCCTGTCACAAATTATAGGTATGAAACGACGGGAGTTCGTCAAGAACACATTCGAGATGCAATGCTGCTAAAGCAAGTTCAAAAGAAAATTCAAGACGTCCTCTACAATGGAGGTGAGAAGGCTAGGGTTCTTGTCGGTCACGGTGTCGAAGATGATCTCAGACGCCTACAAATTGGATACTCATCCGTCATGATAAGGGACACAGCAAATTATCCACCATTGATGAAGACAAGCAAGCTCTGCAATTCACTCAAGTATCTAGCTCAAGTGTATCTAGGATTTGAGGTTCAAAATGGGATACAAGATCCTTATGAAGAATGTATTGTGGGCATGAGATTGTACAAGAGAATGAGATCACAAGTTCATAGGATAGAGAAGCATCCAATGGCTTCTGACCCACAAAACAAAAATAACTTTGCTATTTGGAGGGAAAATGAGCTTCAAAGGATGAGTCCAGAACAAATGTTGGAGATTTCTAGGTCTGATTATTATTGTTGGTGCATGGATTAA 843 42.47 MNPLVLFARNIVDLLILLENISLGHCQNKSARTSLLHEDASFAWPSLTVLTHKGSIKKDANSRLTRGSGAVALACKYVGGGSDGSLDICAKICLIDESENVIFYSYVKPIIPVTNYRYETTGVRQEHIRDAMLLKQVQKKIQDVLYNGGEKARVLVGHGVEDDLRRLQIGYSSVMIRDTANYPPLMKTSKLCNSLKYLAQVYLGFEVQNGIQDPYEECIVGMRLYKRMRSQVHRIEKHPMASDPQNKNNFAIWRENELQRMSPEQMLEISRSDYYCWCMD 280
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 21466201 21470260 - Lsi02G015620.1 Lsi02g01562 656304
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi02g01562 280 CDD REX4_like 71 226 IPR037431 GO:0006364|GO:0008408
Lsi02g01562 280 Pfam Exonuclease 88 204 IPR013520 -
Lsi02g01562 280 PANTHER OS02G0709000 PROTEIN 49 280 - -
Lsi02g01562 280 PANTHER RNA EXONUCLEASE REXO1 / RECO3 FAMILY MEMBER-RELATED 49 280 - -
Lsi02g01562 280 SUPERFAMILY Ribonuclease H-like 83 230 IPR012337 -
Lsi02g01562 280 Gene3D - 67 248 IPR036397 GO:0003676
Lsi02g01562 280 SMART exoiiiendus 69 234 IPR013520 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g01562 Lsi-Chr2:21466201 Lsi04g02039 Lsi-Chr4:27490055 6.25E-22 dispersed
Lsi02g01561 Lsi-Chr2:21454077 Lsi02g01562 Lsi-Chr2:21466201 1.16E-84 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi02g01562 - - csv:101218614 403.29