Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi02g01568 ATGGAGAACCCTTCAGAAAAAAAGTATCCAGTGAATGCCAAGGATTATAACTTACATGAAGAAGTTGGTGAAGGCGTCAGTGCTACTGTGTACAAGGCACTATGCATTCCACTAAATGAGATTGTCGCTATAAAGGTTCTTGATTTGGAGAAGTGCAACAATGACCTAGATGGTATTCGGCGAGAGGTTCAAACAATGACTTTGATTGATCATCCAAATTTGTTAAGAGCACATTGTTCCTTCACTGCTGGTCACCACCTCTGGGTTGTGATGCCATATATGTCTGGGGGATCTTGCCTTCATATTATGAAATCTGCTTATTCGGAAGGTTTTGATGAGCCTGTCATAGCTACCCTATTGCGGGAGGTTCTGAAAGCTCTTGTTTATCTTCATGCTCATGGCCACATTCATAGAGATGTCAAGGCTGGGAATATTTTGCTTGATTCTAATGGTACAGTCAAATTAGCTGATTTTGGAGTCTCAGCTTGTATGTTTGATACTGGCGATAGGCAACGCTCAAGAAACACATTTGTCGGAACTCCTTGCTGGATGGCACCTGAAGTTATGCAGCAATTACATGGATATGACTTCAAGGCAGACATTTGGTCGTTTGGAATAACAGCACTTGAACTGGCTCATGGGCATGCTCCATTTTCTAAATACCCACCAATGAAAGTTTTGCTGATGACATTACAAAATGCTCCTCCTGGTCTTGACTATGAAAGAGATAAGAGGTTTTCTAAGTCGTTCAAAGAAATGGTTGCTACATGCTTAGTGAAGGATCCAAAGAAACGGCCAAGTTCTGAGAAGCTCCTAAAGCACCCTTTTTTTAAACATGCTCGTTCAGTTGATTATCTTGCTCGAACAATCCTGGATGGTCTTGATCCATTGGGGGATCGTTTTAAGAAGCTGAAGGCAAAAGAGGCTGATCTTCTGGGACAAAACAAGGCTTTGTATGGGGACAAGGAGCATTTATCACAGCAAGAGTATATTCGAGGAATTAGTGCCTGGAACTTCAACCTTGAGGATTTAAAGAATCAGGCTGCCCTTATTCAAGATGACGATATGTCAAACATAGAAGATCTAGATGTACATACTACACAGCAAAGAAACAAGAATAATGAGTTTACCTTTCCGGTAGAGGGTTCATCCCTTGAAAGGCTGAATCACCCTACTGCTGCAGCTAGTCAGGAGGATGGTTTCAATGATCTTCATGATTTGGAGAGTTCCCTTGCTTCTTTCCCTATAAAACCTCTTGAAGCACTCAAAGATTGTTTTGACATCTATGAAGATATAAGCACGGACAGTGTAAGGCCAGTGGATAGAGAAAATGGAAGAACCGAGGGTGAGAGTTCAGGGCAGAGTGGTTCCTTACCACGTCATTACATGTCAGAGAATAAGAGGTCTTTCAGCGGTTCACTAATTTCTGACAATGCTGTTTCTCCTAAAAAGATTATTGTAGATGGTGATAGTGGTCCACTATTATATCGCCAGAAAAGGGATACAAATAATGTTTCATCTGTTGAGGATGCAACAGATGGAACAGTTGTTCAACGTAAGGGGCGGTTTAAAGTTACTTCAGCAGAGCTTAGTCCGAAGGGTCCTATGACGGGCTCATTTAGCCCAGTTTGTGGAGGGACGATAAGTCCAACATCCCTGAACCTCACACCTGCTCTACTCCTCCCATCAATGCAATGCATTTTGCAGCAGAATATTCTTCAACGGGAAGAAATTGTTAAATTGATCAAGTGTTTGGAACAAATGACTGGCAAGAATCCAGATGTTTCAGAGACGGTCACCAGTGACCTTCTGCAGGCTACCCCATCAAGTGATAGTTTCTATGATATCCAGGTACCACCAACTTCCTTGAGGGAAAGAGAGTTGCAATCTCAGGTCGTTCATCTGCAGCAGAGAATTGATCATCTTGTTGAGGAATTAGAGAAGCAAAAGTTGAAAAATTCAGAGTTTGAAAGATACATGATTTCTATGGCAAATAAAGAGAAATCATAA 2010 41.64 MENPSEKKYPVNAKDYNLHEEVGEGVSATVYKALCIPLNEIVAIKVLDLEKCNNDLDGIRREVQTMTLIDHPNLLRAHCSFTAGHHLWVVMPYMSGGSCLHIMKSAYSEGFDEPVIATLLREVLKALVYLHAHGHIHRDVKAGNILLDSNGTVKLADFGVSACMFDTGDRQRSRNTFVGTPCWMAPEVMQQLHGYDFKADIWSFGITALELAHGHAPFSKYPPMKVLLMTLQNAPPGLDYERDKRFSKSFKEMVATCLVKDPKKRPSSEKLLKHPFFKHARSVDYLARTILDGLDPLGDRFKKLKAKEADLLGQNKALYGDKEHLSQQEYIRGISAWNFNLEDLKNQAALIQDDDMSNIEDLDVHTTQQRNKNNEFTFPVEGSSLERLNHPTAAASQEDGFNDLHDLESSLASFPIKPLEALKDCFDIYEDISTDSVRPVDRENGRTEGESSGQSGSLPRHYMSENKRSFSGSLISDNAVSPKKIIVDGDSGPLLYRQKRDTNNVSSVEDATDGTVVQRKGRFKVTSAELSPKGPMTGSFSPVCGGTISPTSLNLTPALLLPSMQCILQQNILQREEIVKLIKCLEQMTGKNPDVSETVTSDLLQATPSSDSFYDIQVPPTSLRERELQSQVVHLQQRIDHLVEELEKQKLKNSEFERYMISMANKEKS 669
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 21541017 21553519 + Lsi02G015690.1 Lsi02g01568 656310

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi02g01568 669 SUPERFAMILY Protein kinase-like (PK-like) 13 278 IPR011009 -
Lsi02g01568 669 ProSiteProfiles Protein kinase domain profile. 16 277 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi02g01568 669 PANTHER SERINE/THREONINE-PROTEIN KINASE FRAY2 1 667 - -
Lsi02g01568 669 PANTHER PROTEIN KINASE SUPERFAMILY PROTEIN 1 667 - -
Lsi02g01568 669 ProSitePatterns Protein kinases ATP-binding region signature. 22 45 IPR017441 GO:0005524
Lsi02g01568 669 Coils Coil 625 652 - -
Lsi02g01568 669 CDD STKc_OSR1_SPAK 14 277 - -
Lsi02g01568 669 SMART serkin_6 16 277 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi02g01568 669 Pfam Protein kinase domain 16 277 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi02g01568 669 Gene3D Transferase(Phosphotransferase) domain 1 97 309 - -
Lsi02g01568 669 MobiDBLite consensus disorder prediction 449 464 - -
Lsi02g01568 669 MobiDBLite consensus disorder prediction 437 464 - -
Lsi02g01568 669 Gene3D Phosphorylase Kinase; domain 1 5 92 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi02g01568 K08835 OXSR1, STK39; serine/threonine-protein kinase OSR1/STK39 [EC:2.7.11.1] - csv:101205102 1281.93
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g01568 Lsi-Chr2:21541017 Lsi03g01252 Lsi-Chr3:23117627 5.50E-13 dispersed
Lsi02g01568 Lsi-Chr2:21541017 Lsi05g01693 Lsi-Chr5:24479118 4.82E-111 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi14g1350 . . Bda01g01279 Bda13g01619 Bpe02g01494 Bpe14g00247 . . . . . . . . Sed02g1388 . Cpe13g00900 Bhi06g00518 Tan11g0629 Cmetu09g0153 . . . . . . . . . . . Cone11ag0114 Cone18ag1363 . . Lsi02g01568 Csa05g01916 . . Blo17g00301 Blo18g00333 . . . . Bma01g00975 . . Cmo04g02836 Cmo15g00350 Cma04g02707 Cma15g00341 Car04g02610 Car15g00325 . Cpe01g02349 . . . . . . . Cla09g01858 Cam09g1954 Cec09g2018 Cco09g2111 . . . . . Chy09g00338 Cme09g00387
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lsi04g02056 . 1 581 MAP Kinase Kinase Kinase Kinase AT1G53165 66.8 7.9e-199 690.6
Lsi04g01186 . 269 523 MAP Kinase Kinase Kinase Kinase AT1G53165 51.2 1.7e-60 231.1
Lsi04g02056 . 1 581 MAP Kinase Kinase Kinase Kinase AT3G15220 68.6 8.2e-204 707.2
Lsi04g01186 . 4 523 MAP Kinase Kinase Kinase Kinase AT1G69220 57.7 7.0e-138 488.4
Lsi04g01185 . 38 357 MAP Kinase Kinase Kinase Kinase AT1G69220 53.3 4.6e-81 299.7
Lsi04g02056 . 23 268 MAP Kinase Kinase Kinase Kinase AT1G69220 52.2 1.3e-67 255.0
Lsi02g01568 . 1 666 MAP Kinase Kinase Kinase Kinase AT5G14720 64.6 1.4e-245 845.9
Lsi05g01693 CCT 25 380 MAP Kinase Kinase Kinase Kinase AT5G14720 50.4 9.5e-96 348.2
Lsi07g01113 . 7 702 MAP Kinase Kinase Kinase Kinase AT4G24100 63.8 1.0e-236 816.6
Lsi07g01113 . 11 695 MAP Kinase Kinase Kinase Kinase AT4G10730 66.9 6.4e-249 857.1
Lsi03g01252 . 4 367 MAP Kinase Kinase Kinase Kinase AT1G70430 62.0 2.1e-131 466.5
Lsi07g01113 . 5 369 MAP Kinase Kinase Kinase Kinase AT1G70430 56.5 2.3e-117 419.9
Lsi03g01252 . 1 584 MAP Kinase Kinase Kinase Kinase AT1G79640 58.2 1.6e-201 699.5
Lsi02g01568 . 6 585 MAP Kinase Kinase Kinase Kinase AT1G79640 50.3 5.5e-157 551.6
Lsi02g01568 . 1 328 MAP Kinase Kinase Kinase Kinase AT1G23700 58.9 5.7e-103 371.7
Lsi03g01252 . 6 324 MAP Kinase Kinase Kinase Kinase AT1G23700 51.9 5.8e-87 318.5
Lsi07g01113 . 15 306 MAP Kinase Kinase Kinase Kinase AT1G23700 50.8 3.9e-75 279.3
Lsi05g01693 CCT 32 499 MAP Kinase Kinase Kinase Kinase AT4G14480 59.7 4.8e-142 501.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003111 2 8 2 1 2 1 3 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 2 1 1 3 2 2 51
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
83408 PF00069 Pkinase 2.70E-60 CL0016 Lsi PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi02g01568 Lsi_Chr02 FPKM 36.232548 36.681252 17.432583 18.270882 18.313683 19.324123 19.750656 16.388935 16.178761 18.367096