Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi02g01568 ATGGAGAACCCTTCAGAAAAAAAGTATCCAGTGAATGCCAAGGATTATAACTTACATGAAGAAGTTGGTGAAGGCGTCAGTGCTACTGTGTACAAGGCACTATGCATTCCACTAAATGAGATTGTCGCTATAAAGGTTCTTGATTTGGAGAAGTGCAACAATGACCTAGATGGTATTCGGCGAGAGGTTCAAACAATGACTTTGATTGATCATCCAAATTTGTTAAGAGCACATTGTTCCTTCACTGCTGGTCACCACCTCTGGGTTGTGATGCCATATATGTCTGGGGGATCTTGCCTTCATATTATGAAATCTGCTTATTCGGAAGGTTTTGATGAGCCTGTCATAGCTACCCTATTGCGGGAGGTTCTGAAAGCTCTTGTTTATCTTCATGCTCATGGCCACATTCATAGAGATGTCAAGGCTGGGAATATTTTGCTTGATTCTAATGGTACAGTCAAATTAGCTGATTTTGGAGTCTCAGCTTGTATGTTTGATACTGGCGATAGGCAACGCTCAAGAAACACATTTGTCGGAACTCCTTGCTGGATGGCACCTGAAGTTATGCAGCAATTACATGGATATGACTTCAAGGCAGACATTTGGTCGTTTGGAATAACAGCACTTGAACTGGCTCATGGGCATGCTCCATTTTCTAAATACCCACCAATGAAAGTTTTGCTGATGACATTACAAAATGCTCCTCCTGGTCTTGACTATGAAAGAGATAAGAGGTTTTCTAAGTCGTTCAAAGAAATGGTTGCTACATGCTTAGTGAAGGATCCAAAGAAACGGCCAAGTTCTGAGAAGCTCCTAAAGCACCCTTTTTTTAAACATGCTCGTTCAGTTGATTATCTTGCTCGAACAATCCTGGATGGTCTTGATCCATTGGGGGATCGTTTTAAGAAGCTGAAGGCAAAAGAGGCTGATCTTCTGGGACAAAACAAGGCTTTGTATGGGGACAAGGAGCATTTATCACAGCAAGAGTATATTCGAGGAATTAGTGCCTGGAACTTCAACCTTGAGGATTTAAAGAATCAGGCTGCCCTTATTCAAGATGACGATATGTCAAACATAGAAGATCTAGATGTACATACTACACAGCAAAGAAACAAGAATAATGAGTTTACCTTTCCGGTAGAGGGTTCATCCCTTGAAAGGCTGAATCACCCTACTGCTGCAGCTAGTCAGGAGGATGGTTTCAATGATCTTCATGATTTGGAGAGTTCCCTTGCTTCTTTCCCTATAAAACCTCTTGAAGCACTCAAAGATTGTTTTGACATCTATGAAGATATAAGCACGGACAGTGTAAGGCCAGTGGATAGAGAAAATGGAAGAACCGAGGGTGAGAGTTCAGGGCAGAGTGGTTCCTTACCACGTCATTACATGTCAGAGAATAAGAGGTCTTTCAGCGGTTCACTAATTTCTGACAATGCTGTTTCTCCTAAAAAGATTATTGTAGATGGTGATAGTGGTCCACTATTATATCGCCAGAAAAGGGATACAAATAATGTTTCATCTGTTGAGGATGCAACAGATGGAACAGTTGTTCAACGTAAGGGGCGGTTTAAAGTTACTTCAGCAGAGCTTAGTCCGAAGGGTCCTATGACGGGCTCATTTAGCCCAGTTTGTGGAGGGACGATAAGTCCAACATCCCTGAACCTCACACCTGCTCTACTCCTCCCATCAATGCAATGCATTTTGCAGCAGAATATTCTTCAACGGGAAGAAATTGTTAAATTGATCAAGTGTTTGGAACAAATGACTGGCAAGAATCCAGATGTTTCAGAGACGGTCACCAGTGACCTTCTGCAGGCTACCCCATCAAGTGATAGTTTCTATGATATCCAGGTACCACCAACTTCCTTGAGGGAAAGAGAGTTGCAATCTCAGGTCGTTCATCTGCAGCAGAGAATTGATCATCTTGTTGAGGAATTAGAGAAGCAAAAGTTGAAAAATTCAGAGTTTGAAAGATACATGATTTCTATGGCAAATAAAGAGAAATCATAA 2010 41.64 MENPSEKKYPVNAKDYNLHEEVGEGVSATVYKALCIPLNEIVAIKVLDLEKCNNDLDGIRREVQTMTLIDHPNLLRAHCSFTAGHHLWVVMPYMSGGSCLHIMKSAYSEGFDEPVIATLLREVLKALVYLHAHGHIHRDVKAGNILLDSNGTVKLADFGVSACMFDTGDRQRSRNTFVGTPCWMAPEVMQQLHGYDFKADIWSFGITALELAHGHAPFSKYPPMKVLLMTLQNAPPGLDYERDKRFSKSFKEMVATCLVKDPKKRPSSEKLLKHPFFKHARSVDYLARTILDGLDPLGDRFKKLKAKEADLLGQNKALYGDKEHLSQQEYIRGISAWNFNLEDLKNQAALIQDDDMSNIEDLDVHTTQQRNKNNEFTFPVEGSSLERLNHPTAAASQEDGFNDLHDLESSLASFPIKPLEALKDCFDIYEDISTDSVRPVDRENGRTEGESSGQSGSLPRHYMSENKRSFSGSLISDNAVSPKKIIVDGDSGPLLYRQKRDTNNVSSVEDATDGTVVQRKGRFKVTSAELSPKGPMTGSFSPVCGGTISPTSLNLTPALLLPSMQCILQQNILQREEIVKLIKCLEQMTGKNPDVSETVTSDLLQATPSSDSFYDIQVPPTSLRERELQSQVVHLQQRIDHLVEELEKQKLKNSEFERYMISMANKEKS 669
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 21541017 21553519 + Lsi02G015690.1 Lsi02g01568 656310
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi02g01568 669 SUPERFAMILY Protein kinase-like (PK-like) 13 278 IPR011009 -
Lsi02g01568 669 ProSiteProfiles Protein kinase domain profile. 16 277 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi02g01568 669 PANTHER SERINE/THREONINE-PROTEIN KINASE FRAY2 1 667 - -
Lsi02g01568 669 PANTHER PROTEIN KINASE SUPERFAMILY PROTEIN 1 667 - -
Lsi02g01568 669 ProSitePatterns Protein kinases ATP-binding region signature. 22 45 IPR017441 GO:0005524
Lsi02g01568 669 Coils Coil 625 652 - -
Lsi02g01568 669 CDD STKc_OSR1_SPAK 14 277 - -
Lsi02g01568 669 SMART serkin_6 16 277 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi02g01568 669 Pfam Protein kinase domain 16 277 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi02g01568 669 Gene3D Transferase(Phosphotransferase) domain 1 97 309 - -
Lsi02g01568 669 MobiDBLite consensus disorder prediction 449 464 - -
Lsi02g01568 669 MobiDBLite consensus disorder prediction 437 464 - -
Lsi02g01568 669 Gene3D Phosphorylase Kinase; domain 1 5 92 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g01568 Lsi-Chr2:21541017 Lsi03g01252 Lsi-Chr3:23117627 5.50E-13 dispersed
Lsi02g01568 Lsi-Chr2:21541017 Lsi05g01693 Lsi-Chr5:24479118 4.82E-111 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
83408 PF00069 Pkinase 2.70E-60 CL0016 Lsi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi02g01568 K08835 - csv:101205102 1281.93