Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi02g01577 ATGCAGAATAACGCTGTATTGGCTTTGGCTATGTCTTTTTCCCCTAATTCTATTGCTACGGCTACTGCTATTCCATGCCCTAGCCGAAGCCCTAATTTCCCTCACTTTTCCCACATTCTTCATTTTCGTTCTCGCAGTTCGATCTCATGGCGTTCTTCTTCGTCGATCTCTGTTTCATCTTCTGGATTTACTCCGAGGTTTCAGAAATTTGCCGTAATGGCTGCTTCTGTGCCGGAGAGTGCCGGCGAGACTGTGGAATCGGTTGATTTCGTTCATAATCTCCGGCTTGGTGCAATGTTTGGGGTTTGGTACCTTTTGAATATCTACTACAATATTTTCAACAAACAGGTTCTGAAAGCCTTTCCATTTCCAACTACGGTCACAGCTTTCCAGTTCGGCTGTGGTACGCTCATAGTAAACTTAATGTGGGCTCTTAATTTTCACCATAGACCCAAGATCAATCGATCCCAGTTTGCTGCCATTCTTCCGCTGGCTGTAGCGCACACAATGGGAAACATATTAACCAATGTGAGTCTTGGGAGAGTTGCGGTTTCATTCACTCACACCATCAAAGCAATGGAGCCATTTTTCACTGTCCTTCTCTCTGCTTTGTTTTTGGCTGAGAGGCCCACATTTTGGGTTGTTTTTTCTCTGGTACCCGTTGTAGGAGGAGTGGCACTCGCTTCTTTTACAGAAGCCTCATTTAATTGGATTGGCTTCAGCAGTGCAATGGCTTCAAATCTTACCAATCAATCTCGTAATATCTTCAGCAAAAAGTTCATGGTCCACAAAGAGGCATTGGACAATATCAATCTCTTCTCTGTAATTACTATCATTTCGTTTATCCTGCTGGTTCCCTCGGCTCTTCTCCTTGAAGGCACTAAATTTAGTCCTTCATATCTGCAATTAGCTGCAACTCAAGGGTTGAATATTAGGGAGCTAAGCATTAGGTTGCTTCTATCTGGCATCTGTTTTCATAGTTATCAGCAGGTTACTCTAAGTTTTGATACACACATTCCTATTTAA 1026 42.98 MQNNAVLALAMSFSPNSIATATAIPCPSRSPNFPHFSHILHFRSRSSISWRSSSSISVSSSGFTPRFQKFAVMAASVPESAGETVESVDFVHNLRLGAMFGVWYLLNIYYNIFNKQVLKAFPFPTTVTAFQFGCGTLIVNLMWALNFHHRPKINRSQFAAILPLAVAHTMGNILTNVSLGRVAVSFTHTIKAMEPFFTVLLSALFLAERPTFWVVFSLVPVVGGVALASFTEASFNWIGFSSAMASNLTNQSRNIFSKKFMVHKEALDNINLFSVITIISFILLVPSALLLEGTKFSPSYLQLAATQGLNIRELSIRLLLSGICFHSYQQVTLSFDTHIPI 341
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 21666721 21673651 - Lsi02G015770.1 Lsi02g01577 656319
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi02g01577 341 PANTHER SOLUTE CARRIER FAMILY 35 45 332 - -
Lsi02g01577 341 PANTHER PHOSPHOENOLPYRUVATE/PHOSPHATE TRANSLOCATOR 2, CHLOROPLASTIC 45 332 - -
Lsi02g01577 341 SUPERFAMILY Multidrug resistance efflux transporter EmrE 142 231 - -
Lsi02g01577 341 Pfam Triose-phosphate Transporter family 94 333 IPR004853 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g01577 Lsi-Chr2:21666721 Lsi04g01225 Lsi-Chr4:18936200 4.15E-44 dispersed
Lsi02g00376 Lsi-Chr2:3252077 Lsi02g01577 Lsi-Chr2:21666721 1.37E-100 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi02g01577 K15283 - csv:101217436 571.622