Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi02g01597 ATGTCCCTTAAAAGTCAAACACCTGGTGGCCAAACCATTTTACTTTCTTTTGACGCACTCCAACTGTTTGAGAAAATGTCTAAACTAACTCCCCAGCAGGCGGAGGCGCTTCTGAGTTCTGAGACCGTCAGATTTTCTTCCCCACACCCATTTCCTTCCGCGGCTTTTCTTTTTCCTGATACTGAGTTTGACATGTTTCATACGCGGAGGAGACTTGAAATCACATATAAGAAATGGGGCCCGGTAATGGGTTATGTTCAAAAGAGTTTGATTTGGATGCTAAGTGGCTGGTCGATCCGAAGCAAATCTTTGTTGGGCCAAGGATTGGGGAGGGCGCGCATGGCAAAGTGCACAAGGGGAACTTTGAATTCTTGGAGTGAGGAGTTGAAGATTAAAAAGGGTCCTGTTAGAAGTGATAACAAACAGAAATTAGCTACCGATGGGGACAAAGAAGAAAAAAATCTTCTTCACAAATATAAAGACCAAAATGTTGCAATTAAAATAATTCGGAAAGGTGAAACCCCAGAAGATATTGCGAAAACTGAGGCACGCTTTGCTCGGGAGGTTGCTATGTTATCCAAAGTTCAACACAAGAATCTTGCGAAGGTTTTTATAGGTGCTTGCAAGGAGCCTTTTATGGTGATAGTGACTGAGCTTCTTTTAGGTGGTACATTACGGAAGTACCTGTTGAGTATAAGGCCAAGGTGCTTGGACTTCAATGAGGCAGTTGGCTTTGCACTTGATATTGCACGTGCAATGGAATGCTTGCATTCCCATGGGATCATTCACCGTGACCTCAAACCTGGTATGCTTCTACTGACGACAGTACTTCTAAGCTTTATAAACAAAAATTTCTCAGTTAACATAGAAATTTTACTGGCAGCATGTTCTTTTTCTGTGATAAGCATAAGATTTGAAGGCTCACTGCATCTCATCTATAAGAATTTGATCTTGACTGCAGACCGCAAAACCGTTAAACTTGCTGATTTTGGTCTCGCTAGAGAAGAGACGGTAACAGAGATGATGACGGCTGAAACTGGGACTTACAGATGGATGGCTCCAGAGGTAAAATCTTGTTTGATCTGTTATTTTGTGTATCAATGCAACTGCTTTGTGATAGTTCTCTACATCACTTTGTATACTTGGTGGCAGCTATACAGTACGGTCACTTTACGAAATGGAGAGAAGAAGCATTACAATCACAAGGTGGATGTTTACAGCTTTGGAATTGTATTCTGGGAGATTATCCAAAATAAGTTGCCTTTCGAAGGCATGTCAAATCTACAAGCAGCATATGCGGCTGCTTTTAAGTCGGAGCTACTTAACCCTGAGCTGATAATTAAGAGTAGCTTGGTCCATATGAATATGATTAGGATATATCTCTCCCTGGTAAAGCTCTGCAGCTACAGTGTAATGCCACCATATCCTTATAGTAAAGGAGCAGACATGATTCTTTTCCTCCTTTATTTTAGTGGGGTTTTCTTTTCCCCTTATAACTATAATATTAAGTGCGAAAATGGATCTTCCAAAATAAACTTATGGCTTCAGATTTATGTCACATTACTTAATTTACGACCGAGTGCTGAGAACCTCCCAGCAGAGTTAGCACCGATTGTGACTTCCTGTTGGATGGAGGACCCGAACGATCGGCCTAACTTCAACCAAATCATACAAATGCTCGTGAAATGTCTATCCACCATTCCACAACCAGAATATGTTACACCACCAACGATGCACCGACCTGAGAATGCAGTGCTGCCACCAGAGTCTCCTGGAACAAGTTCCTTGATGGCGGCCACAAGACGTGGCACGGGGGAAGTCCTGAACGGCAAGATGGAAGAGAAACCGAGCAGTTTCTTCTCGTGTTTCACCAGTAACTGTTACTGA 1887 42.4 MSLKSQTPGGQTILLSFDALQLFEKMSKLTPQQAEALLSSETVRFSSPHPFPSAAFLFPDTEFDMFHTRRRLEITYKKWGPVMGYVQKSLIWMLSGWSIRSKSLLGQGLGRARMAKCTRGTLNSWSEELKIKKGPVRSDNKQKLATDGDKEEKNLLHKYKDQNVAIKIIRKGETPEDIAKTEARFAREVAMLSKVQHKNLAKVFIGACKEPFMVIVTELLLGGTLRKYLLSIRPRCLDFNEAVGFALDIARAMECLHSHGIIHRDLKPGMLLLTTVLLSFINKNFSVNIEILLAACSFSVISIRFEGSLHLIYKNLILTADRKTVKLADFGLAREETVTEMMTAETGTYRWMAPEVKSCLICYFVYQCNCFVIVLYITLYTWWQLYSTVTLRNGEKKHYNHKVDVYSFGIVFWEIIQNKLPFEGMSNLQAAYAAAFKSELLNPELIIKSSLVHMNMIRIYLSLVKLCSYSVMPPYPYSKGADMILFLLYFSGVFFSPYNYNIKCENGSSKINLWLQIYVTLLNLRPSAENLPAELAPIVTSCWMEDPNDRPNFNQIIQMLVKCLSTIPQPEYVTPPTMHRPENAVLPPESPGTSSLMAATRRGTGEVLNGKMEEKPSSFFSCFTSNCY 628
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 21848918 21854087 + Lsi02G015970.1 Lsi02g01597 656339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi02g01597 628 Gene3D Transferase(Phosphotransferase) domain 1 312 465 - -
Lsi02g01597 628 PANTHER BNAA06G32000D PROTEIN 385 438 - -
Lsi02g01597 628 Gene3D Transferase(Phosphotransferase) domain 1 476 574 - -
Lsi02g01597 628 PANTHER SERINE-THREONINE PROTEIN KINASE 385 438 - -
Lsi02g01597 628 PANTHER BNAA06G32000D PROTEIN 313 362 - -
Lsi02g01597 628 PANTHER BNAA06G32000D PROTEIN 520 603 - -
Lsi02g01597 628 PANTHER SERINE-THREONINE PROTEIN KINASE 157 277 - -
Lsi02g01597 628 SUPERFAMILY Protein kinase-like (PK-like) 157 589 IPR011009 -
Lsi02g01597 628 PANTHER SERINE-THREONINE PROTEIN KINASE 520 603 - -
Lsi02g01597 628 Gene3D Transferase(Phosphotransferase) domain 1 153 285 - -
Lsi02g01597 628 PANTHER BNAA06G32000D PROTEIN 157 277 - -
Lsi02g01597 628 PANTHER SERINE-THREONINE PROTEIN KINASE 313 362 - -
Lsi02g01597 628 Pfam Protein tyrosine and serine/threonine kinase 396 443 IPR001245 GO:0004672|GO:0006468
Lsi02g01597 628 Pfam Protein tyrosine and serine/threonine kinase 157 273 IPR001245 GO:0004672|GO:0006468
Lsi02g01597 628 ProSiteProfiles Protein kinase domain profile. 103 572 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g01597 Lsi-Chr2:21848918 Lsi06g01595 Lsi-Chr6:26332348 2.96E-29 dispersed
Lsi02g01597 Lsi-Chr2:21848918 Lsi03g01347 Lsi-Chr3:24355166 1.67E-30 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
83409 PF07714 PK_Tyr_Ser-Thr 8.40E-19 CL0016 Lsi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi02g01597 - - oeu:111378059 407.142