Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi02g01608 ATGGAAGTTATTGGTGCAAGTTTTAGCCCTATGATTATTATTGTATTAGCTTTGAGCTTAGCAATATTAATCATCTGCCACTCTCTTATTAAACTCTTTGTAATTACTTCACCCCCAAACCCTAATTTGCCTCCTGGCTGCATGGGCTTCCCCTTTGTTGGAGAGACTCTCAGCTTCCTCAAGCCTCATCATTCTAACTCAATTGGAACCTTCCTTCAACACCATTGCTCCAGGTATGGAAAGGTTTTCAAATCTCATCTATTCGGTTGGCCGGCGATAGTGTCATGTGATCGAGAGCTTAACGTCTTCATTCTTCAGAACGACGATAAGCTTTTCAAAGTGAGTTATCCCAAGGCTATGCATGGCATTCTCGGAAGCAATTCTTTGATTATCGCCGCCGGCCACACCCACCGGAAGCTCAGAAACGTCGTCTTTGCTTTAAGCGTTATGGTGAAGGAGCTATTGGGCATCAAAGAAAACGAGTCGATAGGGTCAAAGATATTGGAAGAGTTCGAAACGTATATGAAAGGCTTTGTTTCTTTGCCTTTAAATCTCCCGGGAACTCCATACTCTAAGGCTGTTAAGGCTAGAGGGAGACTTTCTTACATTGTGAAAGAGATGATGAGAGAGAAGAGAAGGAGGGGATTATTGGAAGGGAATGGTGAGGATTTTCTACAAGTGATAATGTCAAATTGGAAGCTTAGTGATGAAGAAATTGTGAGTGTTGTGTTGGACATATTGCTTGGAGGTTATGAGACAACAGCTACCCTTATGGGATTGATTGTCTATTTTCTTGCACATTCACCTCCTAATTTTCTTGCAAAATTAAAGGAAGAACATCAAGCAATAAGAAATGGAAAAAGGAATGGAGAATGTCTCAATTTGGAAGATTACAAGCAAATGGAGTTCACATGCAATGTGATATCTGAAGCCATGAGATGTGGAAATGTGGTGAAGTTTTTACATAGGGAAGCTCTTACAGATGTCAAATTCAAAGATATTGTCATACCCTCTGGATGGAAAGTTCATCCAGTTTTCTCAGCAATTCATCTTGATCCAACCCTTCATCCAAATCCTCAACATTTTGATCCTTCGAGATGGACTGTATGTGGAAGACAAGAGCAGATGAATGTCCACTAG 1140 40.79 MEVIGASFSPMIIIVLALSLAILIICHSLIKLFVITSPPNPNLPPGCMGFPFVGETLSFLKPHHSNSIGTFLQHHCSRYGKVFKSHLFGWPAIVSCDRELNVFILQNDDKLFKVSYPKAMHGILGSNSLIIAAGHTHRKLRNVVFALSVMVKELLGIKENESIGSKILEEFETYMKGFVSLPLNLPGTPYSKAVKARGRLSYIVKEMMREKRRRGLLEGNGEDFLQVIMSNWKLSDEEIVSVVLDILLGGYETTATLMGLIVYFLAHSPPNFLAKLKEEHQAIRNGKRNGECLNLEDYKQMEFTCNVISEAMRCGNVVKFLHREALTDVKFKDIVIPSGWKVHPVFSAIHLDPTLHPNPQHFDPSRWTVCGRQEQMNVH 379
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 21968163 21973517 - Lsi02G016080.1 Lsi02g01608 656350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi02g01608 379 SUPERFAMILY Cytochrome P450 40 368 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi02g01608 379 Pfam Cytochrome P450 184 368 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi02g01608 379 PANTHER CYTOCHROME P450, FAMILY 724, SUBFAMILY A, POLYPEPTIDE 1 145 372 - -
Lsi02g01608 379 PANTHER CYTOCHROME P450 26 47 146 - -
Lsi02g01608 379 PANTHER CYTOCHROME P450, FAMILY 724, SUBFAMILY A, POLYPEPTIDE 1 47 146 - -
Lsi02g01608 379 PANTHER CYTOCHROME P450 26 145 372 - -
Lsi02g01608 379 PRINTS E-class P450 group I signature 238 255 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi02g01608 379 PRINTS E-class P450 group I signature 345 369 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi02g01608 379 PRINTS E-class P450 group I signature 76 95 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi02g01608 379 Gene3D Cytochrome P450 36 377 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g01608 Lsi-Chr2:21968163 Lsi07g00205 Lsi-Chr7:2230672 3.00E-92 dispersed
Lsi02g01608 Lsi-Chr2:21968163 Lsi04g01563 Lsi-Chr4:23194296 1.56E-56 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi02g01608 K12639 - csv:101215045 588.571