Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi02g01614 ATGGCGGCTTCTTCTTCTCTTTGCTTTATTTTGCTTCTTTTATCTCTCTCTTTCTTCTTAACTATGACTGCTCCACTAACTTCGGGTTCCTCTTTGCCTTCTGTTCATCAACATCCTCATCTTGTCGTTCAAGAAGTTCAAAGGAGCATAAATGCGTCAAGGAGAAACTTGGGATATTTCTCTTGCGGAACAGGAAACCCAATAGACGATTGTTGGAGATGCGACCCCAATTGGGAAACCAACCGTAAACGCTTAGCCGATTGCGCCATCGGCTTCGGCAAAAATGCTATTGGCGGCAAAAACGGTCGTTTCTACATGGTCACCGATGCCGGCGATGACGACCCTCTCAACCCCCGGCCGGGTACTCTCCGACACGCCGTCATTCAAAACGAACCGTTATGGATCATTTTCAAACGAGACATGGTGATCCAACTCAACCAAGAACTAGTAATGAACTCATTCAAAACCATCGATGGACGTGGGGCCAGCGTCCACGTGGCAAGTGGACCATGCATAACGATCCATTACGCGACAAATATCATAATCCATGGCATTCACATTCATGATTGCAAGAGAGGGGGAAATGGTAATATACGAGACTCCCCACAACATTCTGGGTGGTGGACTGTATCGGACGGTGATGGAGTGTCGATCTTGGGAGGAAGACATATTTGGATCGACCATTGCTCTTTGTCTAATTGTAATGATGGGTTGATTGATGTGATTCATGGGTCGACTGCTATTACTATATCCAATAACTATATGACACATCATGATAAAGTGATGTTGTTGGGACATAGCGATTCTTATACACAAGATAAAGATATGCAAGTTACTATTGCTTTTAACCATTTTGGAGAAGGACTTGTTCAGCGAATGCCAAGATGCAGACATGGGTATTTCCATGTAGTGAACAACGATTACACCCACTGGGAAATGTATGCCATCGGAGGGAGTGCTTCGCCGACGATATATAGTCAGGGCAACAGATTTCTGGCGCCATACAACCGCTTCCGGAAGGAGGTTACAAAGCACGAGGACGCGCCGGAGAGCGAATGGCGCCACTGGAACTGGCGCTCCGAGGGCGACATGATGTTGAACGGCGCCTATTTCCGCCAGTCTGGCGCCGGCGCCGCCTCCAGCTACGCAAGAGCTTATAGCCTCAGCGCTAGACCCTCCTCTCTCGTCGGCTCTATCACCGTCACCGCCGGCGCCCTCAACTGCCGCAAGGGCTCCCGCTGCTAG 1245 48.92 MAASSSLCFILLLLSLSFFLTMTAPLTSGSSLPSVHQHPHLVVQEVQRSINASRRNLGYFSCGTGNPIDDCWRCDPNWETNRKRLADCAIGFGKNAIGGKNGRFYMVTDAGDDDPLNPRPGTLRHAVIQNEPLWIIFKRDMVIQLNQELVMNSFKTIDGRGASVHVASGPCITIHYATNIIIHGIHIHDCKRGGNGNIRDSPQHSGWWTVSDGDGVSILGGRHIWIDHCSLSNCNDGLIDVIHGSTAITISNNYMTHHDKVMLLGHSDSYTQDKDMQVTIAFNHFGEGLVQRMPRCRHGYFHVVNNDYTHWEMYAIGGSASPTIYSQGNRFLAPYNRFRKEVTKHEDAPESEWRHWNWRSEGDMMLNGAYFRQSGAGAASSYARAYSLSARPSSLVGSITVTAGALNCRKGSRC 414
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 22008013 22011237 + Lsi02G016140.1 Lsi02g01614 656356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi02g01614 414 Pfam Pectate lyase 149 331 IPR002022 -
Lsi02g01614 414 SUPERFAMILY Pectin lyase-like 49 409 IPR011050 -
Lsi02g01614 414 PANTHER PECTATE LYASE 18-RELATED 13 411 IPR045032 GO:0030570
Lsi02g01614 414 SMART amb_all 140 337 IPR002022 -
Lsi02g01614 414 PRINTS Pollen allergen Amb family signature 314 333 IPR018082 -
Lsi02g01614 414 PRINTS Pollen allergen Amb family signature 212 233 IPR018082 -
Lsi02g01614 414 PRINTS Pollen allergen Amb family signature 356 380 IPR018082 -
Lsi02g01614 414 PRINTS Pollen allergen Amb family signature 88 105 IPR018082 -
Lsi02g01614 414 PRINTS Pollen allergen Amb family signature 148 164 IPR018082 -
Lsi02g01614 414 PRINTS Pollen allergen Amb family signature 112 137 IPR018082 -
Lsi02g01614 414 PRINTS Pollen allergen Amb family signature 385 408 IPR018082 -
Lsi02g01614 414 PRINTS Pollen allergen Amb family signature 292 311 IPR018082 -
Lsi02g01614 414 PANTHER PECTATE LYASE 13 411 - -
Lsi02g01614 414 Gene3D - 65 407 IPR012334 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g00456 Lsi-Chr2:3822873 Lsi02g01614 Lsi-Chr2:22008013 0 dispersed
Lsi02g01614 Lsi-Chr2:22008013 Lsi08g01628 Lsi-Chr8:24200656 0 dispersed
Lsi02g01614 Lsi-Chr2:22008013 Lsi09g01161 Lsi-Chr9:18677108 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi02g01614 K01728 - csv:101217834 786.178