Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lsi02g01614 | ATGGCGGCTTCTTCTTCTCTTTGCTTTATTTTGCTTCTTTTATCTCTCTCTTTCTTCTTAACTATGACTGCTCCACTAACTTCGGGTTCCTCTTTGCCTTCTGTTCATCAACATCCTCATCTTGTCGTTCAAGAAGTTCAAAGGAGCATAAATGCGTCAAGGAGAAACTTGGGATATTTCTCTTGCGGAACAGGAAACCCAATAGACGATTGTTGGAGATGCGACCCCAATTGGGAAACCAACCGTAAACGCTTAGCCGATTGCGCCATCGGCTTCGGCAAAAATGCTATTGGCGGCAAAAACGGTCGTTTCTACATGGTCACCGATGCCGGCGATGACGACCCTCTCAACCCCCGGCCGGGTACTCTCCGACACGCCGTCATTCAAAACGAACCGTTATGGATCATTTTCAAACGAGACATGGTGATCCAACTCAACCAAGAACTAGTAATGAACTCATTCAAAACCATCGATGGACGTGGGGCCAGCGTCCACGTGGCAAGTGGACCATGCATAACGATCCATTACGCGACAAATATCATAATCCATGGCATTCACATTCATGATTGCAAGAGAGGGGGAAATGGTAATATACGAGACTCCCCACAACATTCTGGGTGGTGGACTGTATCGGACGGTGATGGAGTGTCGATCTTGGGAGGAAGACATATTTGGATCGACCATTGCTCTTTGTCTAATTGTAATGATGGGTTGATTGATGTGATTCATGGGTCGACTGCTATTACTATATCCAATAACTATATGACACATCATGATAAAGTGATGTTGTTGGGACATAGCGATTCTTATACACAAGATAAAGATATGCAAGTTACTATTGCTTTTAACCATTTTGGAGAAGGACTTGTTCAGCGAATGCCAAGATGCAGACATGGGTATTTCCATGTAGTGAACAACGATTACACCCACTGGGAAATGTATGCCATCGGAGGGAGTGCTTCGCCGACGATATATAGTCAGGGCAACAGATTTCTGGCGCCATACAACCGCTTCCGGAAGGAGGTTACAAAGCACGAGGACGCGCCGGAGAGCGAATGGCGCCACTGGAACTGGCGCTCCGAGGGCGACATGATGTTGAACGGCGCCTATTTCCGCCAGTCTGGCGCCGGCGCCGCCTCCAGCTACGCAAGAGCTTATAGCCTCAGCGCTAGACCCTCCTCTCTCGTCGGCTCTATCACCGTCACCGCCGGCGCCCTCAACTGCCGCAAGGGCTCCCGCTGCTAG | 1245 | 48.92 | MAASSSLCFILLLLSLSFFLTMTAPLTSGSSLPSVHQHPHLVVQEVQRSINASRRNLGYFSCGTGNPIDDCWRCDPNWETNRKRLADCAIGFGKNAIGGKNGRFYMVTDAGDDDPLNPRPGTLRHAVIQNEPLWIIFKRDMVIQLNQELVMNSFKTIDGRGASVHVASGPCITIHYATNIIIHGIHIHDCKRGGNGNIRDSPQHSGWWTVSDGDGVSILGGRHIWIDHCSLSNCNDGLIDVIHGSTAITISNNYMTHHDKVMLLGHSDSYTQDKDMQVTIAFNHFGEGLVQRMPRCRHGYFHVVNNDYTHWEMYAIGGSASPTIYSQGNRFLAPYNRFRKEVTKHEDAPESEWRHWNWRSEGDMMLNGAYFRQSGAGAASSYARAYSLSARPSSLVGSITVTAGALNCRKGSRC | 414 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
2 | 22008013 | 22011237 | + | Lsi02G016140.1 | Lsi02g01614 | 656356 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lsi02g01614 | 414 | Pfam | Pectate lyase | 149 | 331 | IPR002022 | - | |
Lsi02g01614 | 414 | SUPERFAMILY | Pectin lyase-like | 49 | 409 | IPR011050 | - | |
Lsi02g01614 | 414 | PANTHER | PECTATE LYASE 18-RELATED | 13 | 411 | IPR045032 | GO:0030570 | |
Lsi02g01614 | 414 | SMART | amb_all | 140 | 337 | IPR002022 | - | |
Lsi02g01614 | 414 | PRINTS | Pollen allergen Amb family signature | 314 | 333 | IPR018082 | - | |
Lsi02g01614 | 414 | PRINTS | Pollen allergen Amb family signature | 212 | 233 | IPR018082 | - | |
Lsi02g01614 | 414 | PRINTS | Pollen allergen Amb family signature | 356 | 380 | IPR018082 | - | |
Lsi02g01614 | 414 | PRINTS | Pollen allergen Amb family signature | 88 | 105 | IPR018082 | - | |
Lsi02g01614 | 414 | PRINTS | Pollen allergen Amb family signature | 148 | 164 | IPR018082 | - | |
Lsi02g01614 | 414 | PRINTS | Pollen allergen Amb family signature | 112 | 137 | IPR018082 | - | |
Lsi02g01614 | 414 | PRINTS | Pollen allergen Amb family signature | 385 | 408 | IPR018082 | - | |
Lsi02g01614 | 414 | PRINTS | Pollen allergen Amb family signature | 292 | 311 | IPR018082 | - | |
Lsi02g01614 | 414 | PANTHER | PECTATE LYASE | 13 | 411 | - | - | |
Lsi02g01614 | 414 | Gene3D | - | 65 | 407 | IPR012334 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lsi02g00456 | Lsi-Chr2:3822873 | Lsi02g01614 | Lsi-Chr2:22008013 | 0 | dispersed | |
Lsi02g01614 | Lsi-Chr2:22008013 | Lsi08g01628 | Lsi-Chr8:24200656 | 0 | dispersed | |
Lsi02g01614 | Lsi-Chr2:22008013 | Lsi09g01161 | Lsi-Chr9:18677108 | 0 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lsi02g01614 | K01728 | - | csv:101217834 | 786.178 |