Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi02g01625 ATGGCAGCAACCATTTCCACAATCTTTCTGATATCGTTCTCTAATTTGTTGCTAATAATATCACTAGCCGTGGAAAGCAGAGCACTTACCGGAGGTGTTTACGGCGCCGGACCATGGCAGAATGCCCACGCTACTTTCTACGGCGGCAATGACGCCTCCGGCACAATGGGCGGGGCGTGTGGTTATGGTAACTTGTACAGCCAAGGCTACGGCGTGAACACGGCGGCGCTCAGCACAGCTCTGTTCAACGACGGCTATAGCTGTGGAGCTTGTTTTGAGATCAAGTGCGTGAATGACCCACAATGGTGTCATGCCGGTAACCCCTCCATCTTTGTCACAGCCACCAATTTTTGTCCTCCCAATTACGCTCTGCCTAACGACAATGGCGGCTGGTGCAATCCTCCTCGCCCTCACTTTGACCTCTCCATGCCCATGTTTCTTAAGATCGCCCAATATCGCGCCGGTATTGTCCCTGTTTCCTTTCGCAGTAAGATGGAATTTTCTGGATCTGTCTCTCGAGTCTCCGACTCCCTCCCCCGCGCAATCGGTATCCCTCCATCTGTATATCTTGCTCAGCTATCCCGTCGATTCGTGTCTCGCCGGTGGAAATCATCAAAAGAATGGGACAGTTTTAATCACTCTGGTACGAGGGCTGTTTCAAGCTCAAAGCAAAGGACAGAAAACTTCACAACAACCACACCCTTCGAGCATTCAAGACTATCTGAATCCGTGAGGCTAAGGTGTAGGGTTTTTATGAGACCAGAAAGTAGCGCAGCTCGAGGGACGGAGATGATTATGGTTAGAGAACCGGGTGACCCTGCTCCAGATTCAACTGAGTATAGGCATGGTCTGACCCCTCCTATGAGGGATGCTCGAAAACGTAGATTTCGACGAGAGCCAGATTTAAATGATGATAGAGATGAGAATCCTCATCATGCAAGTGCAAAGCCTGCATCCGCACCTGTGGCAAAGCCTGATGTAATGGAAACTGAAACAAATGTTGGGGAGCCTGAAAGGAGCGACTCTGATGACTCTGATCATTCAATTGTTTAG 1053 49.86 MAATISTIFLISFSNLLLIISLAVESRALTGGVYGAGPWQNAHATFYGGNDASGTMGGACGYGNLYSQGYGVNTAALSTALFNDGYSCGACFEIKCVNDPQWCHAGNPSIFVTATNFCPPNYALPNDNGGWCNPPRPHFDLSMPMFLKIAQYRAGIVPVSFRSKMEFSGSVSRVSDSLPRAIGIPPSVYLAQLSRRFVSRRWKSSKEWDSFNHSGTRAVSSSKQRTENFTTTTPFEHSRLSESVRLRCRVFMRPESSAARGTEMIMVREPGDPAPDSTEYRHGLTPPMRDARKRRFRREPDLNDDRDENPHHASAKPASAPVAKPDVMETETNVGEPERSDSDDSDHSIV 350
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 22146003 22152460 + Lsi02G016250.1 Lsi02g01625 656367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi02g01625 350 PRINTS Expansin/Lol pI family signature 78 96 IPR007118 GO:0005576
Lsi02g01625 350 PRINTS Expansin/Lol pI family signature 56 74 IPR007118 GO:0005576
Lsi02g01625 350 PRINTS Expansin/Lol pI family signature 38 53 IPR007118 GO:0005576
Lsi02g01625 350 PRINTS Expansin/Lol pI family signature 154 170 IPR007118 GO:0005576
Lsi02g01625 350 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 57 162 IPR007112 -
Lsi02g01625 350 SUPERFAMILY Barwin-like endoglucanases 38 162 IPR036908 -
Lsi02g01625 350 SMART dpbb_1 74 161 IPR007112 -
Lsi02g01625 350 MobiDBLite consensus disorder prediction 210 236 - -
Lsi02g01625 350 MobiDBLite consensus disorder prediction 331 350 - -
Lsi02g01625 350 MobiDBLite consensus disorder prediction 261 350 - -
Lsi02g01625 350 Pfam TAFII55 protein conserved region 274 299 IPR006751 GO:0005669|GO:0006367
Lsi02g01625 350 PRINTS Expansin signature 146 159 IPR002963 GO:0009664
Lsi02g01625 350 PRINTS Expansin signature 129 146 IPR002963 GO:0009664
Lsi02g01625 350 PRINTS Expansin signature 69 83 IPR002963 GO:0009664
Lsi02g01625 350 PRINTS Expansin signature 96 107 IPR002963 GO:0009664
Lsi02g01625 350 PRINTS Expansin signature 110 120 IPR002963 GO:0009664
Lsi02g01625 350 PANTHER EXPANSIN-A15 14 163 IPR002963 GO:0009664
Lsi02g01625 350 Gene3D - 27 164 IPR036908 -
Lsi02g01625 350 PANTHER EXPANSIN-A6 14 163 - -
Lsi02g01625 350 MobiDBLite consensus disorder prediction 283 313 - -
Lsi02g01625 350 Pfam Lytic transglycolase 74 161 IPR009009 -
Lsi02g01625 350 MobiDBLite consensus disorder prediction 211 236 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g01625 Lsi-Chr2:22146003 Lsi02g01353 Lsi-Chr2:18139244 1.62E-84 dispersed
Lsi09g00326 Lsi-Chr9:3404485 Lsi02g01625 Lsi-Chr2:22146003 1.99E-56 transposed
Lsi01g01431 Lsi-Chr1:12461124 Lsi02g01625 Lsi-Chr2:22146003 8.69E-88 wgd
Lsi10g01386 Lsi-Chr10:17970338 Lsi02g01625 Lsi-Chr2:22146003 2.23E-88 wgd
Lsi02g01625 Lsi-Chr2:22146003 Lsi04g00889 Lsi-Chr4:8841940 4.48E-84 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi02g01625 - - csv:101216168 288.885