Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi02g01634 ATGGCAGATGCAGAGGACATTCAGCCTCTTGTGTGCGATAATGGAACAGGAATGGTTAAGGCTGGATTTGCTGGGGATGATGCTCCCCGGGCAGTCTTCCCTAGCATTGTCGGCCGTCCTCGTCACACCGGTGTGATGGTTGGCATGGGCCAGAAAGATGCTTATGTTGGCGATGAAGCTCAATCCAAGCGTGGTATTTTGACCCTGAAATACCCAATTGAGCATGGTATTGTGAGCAACTGGGATGATATGGAAAAGATATGGCATCACACATTCTATAACGAGCTTCGGGTCGCTCCAGAGGAGCATCCTGTACTCCTAACTGAGGCTCCTCTTAACCCCAAGGCTAACCGTGAAAAGATGACCCAAATCATGTTTGAGACCTTTAACACCCCTGCCATGTATGTAGCTATTCAAGCTGTCCTCTCACTGTATGCCAGTGGTCGAACCACCGGGGTTGTTGTCTATTATGTAGGCATTGTGTTGGACTCTGGAGATGGTGTCAGTCATACAGTCCCCATCTATGAGGGTTATGCTCTTCCACACGCCATTCTTCGACTCGACCTTGCTGGCCGTGATCTTACTGATAACTTGATGAAGATTCTCACGGAGCGTGGTTATTCATTCACCACTACAGCAGAGCGTGAAATTGTGAGGGATATGAAGGAAAAGCTTTCATATATCGCCCTTGACTATGAGCAAGAGCTTGAAACATCCAAAACCAGCTCAACAGTTGAAAAGAGCTATGAGTTGCCTGATGGACAAGTCATCACAATTGGCGCTGAGCGTTTTAGATGCCCGGAAGTTCTTTTCCAGCCATCCATGATCGGAATGGAAGCTGCAGGTATTCATGAAACCACATATAATTCCATCATGAAGTGCGACGTGGATATCAGGAAGGATTTGTATGGCAACATTGTCCTATCTGGTGGTTCGACCATGTTTTCGGGCATTGCCGATAGAATGAGTAAGGAAATCTCTGCATTGGCTCCAAGCAGCATGAAGATCAAGGTGGTGGCACCTCCAGAGAGAAAATACAGTGTCTGGATTGGTGGTTCTATCTTGGCTTCTCTGAGTACCTTCCAGCAGATGTGGATTGCAAAGGCAGAGTATGATGAATCTGGGCCATCAATTGTGCACAGGAAATGCTTCTAA 1155 47.19 MADAEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGVVVYYVGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDNLMKILTERGYSFTTTAEREIVRDMKEKLSYIALDYEQELETSKTSSTVEKSYELPDGQVITIGAERFRCPEVLFQPSMIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFSGIADRMSKEISALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKAEYDESGPSIVHRKCF 384
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 22218446 22220942 - Lsi02G016340.1 Lsi02g01634 656376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi02g01634 384 PANTHER ACTIN-97 1 383 - -
Lsi02g01634 384 ProSitePatterns Actins and actin-related proteins signature. 106 118 IPR020902 -
Lsi02g01634 384 ProSitePatterns Actins signature 1. 55 65 IPR004001 -
Lsi02g01634 384 CDD NBD_sugar-kinase_HSP70_actin 10 190 - -
Lsi02g01634 384 Gene3D - 140 347 - -
Lsi02g01634 384 PANTHER ACTIN 1 383 IPR004000 -
Lsi02g01634 384 Gene3D - 10 378 - -
Lsi02g01634 384 SUPERFAMILY Actin-like ATPase domain 159 384 IPR043129 -
Lsi02g01634 384 Pfam Actin 5 384 IPR004000 -
Lsi02g01634 384 SUPERFAMILY Actin-like ATPase domain 6 155 IPR043129 -
Lsi02g01634 384 ProSitePatterns Actins signature 2. 365 373 IPR004001 -
Lsi02g01634 384 PRINTS Actin signature 63 85 IPR004000 -
Lsi02g01634 384 PRINTS Actin signature 142 161 IPR004000 -
Lsi02g01634 384 PRINTS Actin signature 28 37 IPR004000 -
Lsi02g01634 384 PRINTS Actin signature 51 62 IPR004000 -
Lsi02g01634 384 PRINTS Actin signature 245 261 IPR004000 -
Lsi02g01634 384 PRINTS Actin signature 117 130 IPR004000 -
Lsi02g01634 384 Gene3D Actin; Chain A, domain 4 189 280 - -
Lsi02g01634 384 SMART actin_3 7 384 IPR004000 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g01634 Lsi-Chr2:22218446 Lsi04g00880 Lsi-Chr4:8665301 0 dispersed
Lsi11g00335 Lsi-Chr11:3463102 Lsi02g01634 Lsi-Chr2:22218446 4.62E-21 transposed
Lsi01g01425 Lsi-Chr1:12390072 Lsi02g01634 Lsi-Chr2:22218446 0 wgd
Lsi10g01374 Lsi-Chr10:17888505 Lsi02g01634 Lsi-Chr2:22218446 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi02g01634 K10355 - csv:101220611 728.783