Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lsi02g01634 | ATGGCAGATGCAGAGGACATTCAGCCTCTTGTGTGCGATAATGGAACAGGAATGGTTAAGGCTGGATTTGCTGGGGATGATGCTCCCCGGGCAGTCTTCCCTAGCATTGTCGGCCGTCCTCGTCACACCGGTGTGATGGTTGGCATGGGCCAGAAAGATGCTTATGTTGGCGATGAAGCTCAATCCAAGCGTGGTATTTTGACCCTGAAATACCCAATTGAGCATGGTATTGTGAGCAACTGGGATGATATGGAAAAGATATGGCATCACACATTCTATAACGAGCTTCGGGTCGCTCCAGAGGAGCATCCTGTACTCCTAACTGAGGCTCCTCTTAACCCCAAGGCTAACCGTGAAAAGATGACCCAAATCATGTTTGAGACCTTTAACACCCCTGCCATGTATGTAGCTATTCAAGCTGTCCTCTCACTGTATGCCAGTGGTCGAACCACCGGGGTTGTTGTCTATTATGTAGGCATTGTGTTGGACTCTGGAGATGGTGTCAGTCATACAGTCCCCATCTATGAGGGTTATGCTCTTCCACACGCCATTCTTCGACTCGACCTTGCTGGCCGTGATCTTACTGATAACTTGATGAAGATTCTCACGGAGCGTGGTTATTCATTCACCACTACAGCAGAGCGTGAAATTGTGAGGGATATGAAGGAAAAGCTTTCATATATCGCCCTTGACTATGAGCAAGAGCTTGAAACATCCAAAACCAGCTCAACAGTTGAAAAGAGCTATGAGTTGCCTGATGGACAAGTCATCACAATTGGCGCTGAGCGTTTTAGATGCCCGGAAGTTCTTTTCCAGCCATCCATGATCGGAATGGAAGCTGCAGGTATTCATGAAACCACATATAATTCCATCATGAAGTGCGACGTGGATATCAGGAAGGATTTGTATGGCAACATTGTCCTATCTGGTGGTTCGACCATGTTTTCGGGCATTGCCGATAGAATGAGTAAGGAAATCTCTGCATTGGCTCCAAGCAGCATGAAGATCAAGGTGGTGGCACCTCCAGAGAGAAAATACAGTGTCTGGATTGGTGGTTCTATCTTGGCTTCTCTGAGTACCTTCCAGCAGATGTGGATTGCAAAGGCAGAGTATGATGAATCTGGGCCATCAATTGTGCACAGGAAATGCTTCTAA | 1155 | 47.19 | MADAEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGVVVYYVGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDNLMKILTERGYSFTTTAEREIVRDMKEKLSYIALDYEQELETSKTSSTVEKSYELPDGQVITIGAERFRCPEVLFQPSMIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFSGIADRMSKEISALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKAEYDESGPSIVHRKCF | 384 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
2 | 22218446 | 22220942 | - | Lsi02G016340.1 | Lsi02g01634 | 656376 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lsi02g01634 | 384 | PANTHER | ACTIN-97 | 1 | 383 | - | - | |
Lsi02g01634 | 384 | ProSitePatterns | Actins and actin-related proteins signature. | 106 | 118 | IPR020902 | - | |
Lsi02g01634 | 384 | ProSitePatterns | Actins signature 1. | 55 | 65 | IPR004001 | - | |
Lsi02g01634 | 384 | CDD | NBD_sugar-kinase_HSP70_actin | 10 | 190 | - | - | |
Lsi02g01634 | 384 | Gene3D | - | 140 | 347 | - | - | |
Lsi02g01634 | 384 | PANTHER | ACTIN | 1 | 383 | IPR004000 | - | |
Lsi02g01634 | 384 | Gene3D | - | 10 | 378 | - | - | |
Lsi02g01634 | 384 | SUPERFAMILY | Actin-like ATPase domain | 159 | 384 | IPR043129 | - | |
Lsi02g01634 | 384 | Pfam | Actin | 5 | 384 | IPR004000 | - | |
Lsi02g01634 | 384 | SUPERFAMILY | Actin-like ATPase domain | 6 | 155 | IPR043129 | - | |
Lsi02g01634 | 384 | ProSitePatterns | Actins signature 2. | 365 | 373 | IPR004001 | - | |
Lsi02g01634 | 384 | PRINTS | Actin signature | 63 | 85 | IPR004000 | - | |
Lsi02g01634 | 384 | PRINTS | Actin signature | 142 | 161 | IPR004000 | - | |
Lsi02g01634 | 384 | PRINTS | Actin signature | 28 | 37 | IPR004000 | - | |
Lsi02g01634 | 384 | PRINTS | Actin signature | 51 | 62 | IPR004000 | - | |
Lsi02g01634 | 384 | PRINTS | Actin signature | 245 | 261 | IPR004000 | - | |
Lsi02g01634 | 384 | PRINTS | Actin signature | 117 | 130 | IPR004000 | - | |
Lsi02g01634 | 384 | Gene3D | Actin; Chain A, domain 4 | 189 | 280 | - | - | |
Lsi02g01634 | 384 | SMART | actin_3 | 7 | 384 | IPR004000 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lsi02g01634 | Lsi-Chr2:22218446 | Lsi04g00880 | Lsi-Chr4:8665301 | 0 | dispersed | |
Lsi11g00335 | Lsi-Chr11:3463102 | Lsi02g01634 | Lsi-Chr2:22218446 | 4.62E-21 | transposed | |
Lsi01g01425 | Lsi-Chr1:12390072 | Lsi02g01634 | Lsi-Chr2:22218446 | 0 | wgd | |
Lsi10g01374 | Lsi-Chr10:17888505 | Lsi02g01634 | Lsi-Chr2:22218446 | 0 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lsi02g01634 | K10355 | - | csv:101220611 | 728.783 |