Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi02g01651 ATGGTTTTCTCTTCAGTTCCTGTGTTTCTTGATCCACCCAATTGGCCTTCTCAGCAACCAAATCAGCTCCAAGGAAGTGGTTGCGAGACTAATAATGCTCAACATCTTCCACCTCCGGCACCGCCAGCTAGCGGTGGCGGTAGTGGTGGTGGTGGAGGACCTGGTTCGATTAGACCAGGGTCAATGACGGATCGAGCCAGGTTGGCAAAGATGCCGCAACCGGAAGCCGGGTTAAAATGCCCTAGATGCGAATCAACAAACACAAAGTTTTGTTACTTCAACAACTACAGTCTCACTCAACCTCGCCACTTTTGCAAGACGTGTCGACGGTACTGGACGAGAGGTGGGGCGATGAGGAACGTGCCGGTTGGAGGCGGGTGTCGGCGGTCGAGCAAGAGATCAAGCAAAGGAGGAAGTAATAGGTCAAAATCTCCAGGAGGTTCAAGCACTTCAACAAGCACAGTGTCATCAAATAGTTGCACAACAGATATAATTAGCCAACAATTGGCTCATCATCCTCCTCCTCCAACAACTCATTTACCCTTTTTTTCTCAAAATTTACACCATCTTAGTGATTTTGGGAACCTTGGTTTAAACTTTGAAGCACTTCAAATCCCTTCACTCCCATCATCAGCTGGAGGAGCTGAATCCTCAATTTTATCAAGTGGAATTACAGATCATCATCAATGGAAAATACCCTTTTTTGCAAATTTACATCAACAAAATGGGATGTATTCAAATTTCTTGGCTGATCAAGATCATCATCATCATCATCATCAACAAGGAGCTGATTTTTCAAATTACCAGCGTTTGTCAAAGCCATTATTGGAGAGTGGATTCAATACTACTACTACTACTACTACAAATCATCATCAATTGGAGAATATTAATAATAATAATAGCATGAAAATCATGGAGGACACACAAGGGATTAACAATTTGTCAAGAAATTTTCTTGGAATTCAACCAAATGATGATCAATTCTGGAATTCTACAACAACAACAACAACACCACCTGGGAATATTGCATGGAGTAGTGATCAAATTTCAGATCATTTCAATTCAACTTCTTCCACTACTCATCTCTTGTAA 1092 41.94 MVFSSVPVFLDPPNWPSQQPNQLQGSGCETNNAQHLPPPAPPASGGGSGGGGGPGSIRPGSMTDRARLAKMPQPEAGLKCPRCESTNTKFCYFNNYSLTQPRHFCKTCRRYWTRGGAMRNVPVGGGCRRSSKRSSKGGSNRSKSPGGSSTSTSTVSSNSCTTDIISQQLAHHPPPPTTHLPFFSQNLHHLSDFGNLGLNFEALQIPSLPSSAGGAESSILSSGITDHHQWKIPFFANLHQQNGMYSNFLADQDHHHHHHQQGADFSNYQRLSKPLLESGFNTTTTTTTNHHQLENINNNNSMKIMEDTQGINNLSRNFLGIQPNDDQFWNSTTTTTTPPGNIAWSSDQISDHFNSTSSTTHLL 363
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 22311974 22313630 - Lsi02G016510.1 Lsi02g01651 656393
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi02g01651 363 MobiDBLite consensus disorder prediction 119 158 - -
Lsi02g01651 363 ProSitePatterns Zinc finger Dof-type signature. 80 116 IPR003851 GO:0003677|GO:0006355
Lsi02g01651 363 ProSiteProfiles Zinc finger Dof-type profile. 78 132 IPR003851 GO:0003677|GO:0006355
Lsi02g01651 363 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 6 336 IPR045174 GO:0003700|GO:0006355
Lsi02g01651 363 MobiDBLite consensus disorder prediction 137 158 - -
Lsi02g01651 363 MobiDBLite consensus disorder prediction 11 33 - -
Lsi02g01651 363 Pfam Dof domain, zinc finger 78 132 IPR003851 GO:0003677|GO:0006355
Lsi02g01651 363 PANTHER DOF DOMAIN ZINC FINGER PROTEIN 6 336 - -
Lsi02g01651 363 MobiDBLite consensus disorder prediction 10 62 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g01651 Lsi-Chr2:22311974 Lsi03g02101 Lsi-Chr3:32272111 1.04E-52 dispersed
Lsi01g01417 Lsi-Chr1:12314911 Lsi02g01651 Lsi-Chr2:22311974 2.28E-40 wgd
Lsi10g01367 Lsi-Chr10:17825835 Lsi02g01651 Lsi-Chr2:22311974 2.44E-46 wgd
Lsi02g01651 Lsi-Chr2:22311974 Lsi04g00882 Lsi-Chr4:8680085 7.83E-63 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
24849 PF02701 zf-Dof 4.60E-31 No_clan Lsi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi02g01651 - - csv:101212561 518.85