Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi02g01651 ATGGTTTTCTCTTCAGTTCCTGTGTTTCTTGATCCACCCAATTGGCCTTCTCAGCAACCAAATCAGCTCCAAGGAAGTGGTTGCGAGACTAATAATGCTCAACATCTTCCACCTCCGGCACCGCCAGCTAGCGGTGGCGGTAGTGGTGGTGGTGGAGGACCTGGTTCGATTAGACCAGGGTCAATGACGGATCGAGCCAGGTTGGCAAAGATGCCGCAACCGGAAGCCGGGTTAAAATGCCCTAGATGCGAATCAACAAACACAAAGTTTTGTTACTTCAACAACTACAGTCTCACTCAACCTCGCCACTTTTGCAAGACGTGTCGACGGTACTGGACGAGAGGTGGGGCGATGAGGAACGTGCCGGTTGGAGGCGGGTGTCGGCGGTCGAGCAAGAGATCAAGCAAAGGAGGAAGTAATAGGTCAAAATCTCCAGGAGGTTCAAGCACTTCAACAAGCACAGTGTCATCAAATAGTTGCACAACAGATATAATTAGCCAACAATTGGCTCATCATCCTCCTCCTCCAACAACTCATTTACCCTTTTTTTCTCAAAATTTACACCATCTTAGTGATTTTGGGAACCTTGGTTTAAACTTTGAAGCACTTCAAATCCCTTCACTCCCATCATCAGCTGGAGGAGCTGAATCCTCAATTTTATCAAGTGGAATTACAGATCATCATCAATGGAAAATACCCTTTTTTGCAAATTTACATCAACAAAATGGGATGTATTCAAATTTCTTGGCTGATCAAGATCATCATCATCATCATCATCAACAAGGAGCTGATTTTTCAAATTACCAGCGTTTGTCAAAGCCATTATTGGAGAGTGGATTCAATACTACTACTACTACTACTACAAATCATCATCAATTGGAGAATATTAATAATAATAATAGCATGAAAATCATGGAGGACACACAAGGGATTAACAATTTGTCAAGAAATTTTCTTGGAATTCAACCAAATGATGATCAATTCTGGAATTCTACAACAACAACAACAACACCACCTGGGAATATTGCATGGAGTAGTGATCAAATTTCAGATCATTTCAATTCAACTTCTTCCACTACTCATCTCTTGTAA 1092 41.94 MVFSSVPVFLDPPNWPSQQPNQLQGSGCETNNAQHLPPPAPPASGGGSGGGGGPGSIRPGSMTDRARLAKMPQPEAGLKCPRCESTNTKFCYFNNYSLTQPRHFCKTCRRYWTRGGAMRNVPVGGGCRRSSKRSSKGGSNRSKSPGGSSTSTSTVSSNSCTTDIISQQLAHHPPPPTTHLPFFSQNLHHLSDFGNLGLNFEALQIPSLPSSAGGAESSILSSGITDHHQWKIPFFANLHQQNGMYSNFLADQDHHHHHHQQGADFSNYQRLSKPLLESGFNTTTTTTTNHHQLENINNNNSMKIMEDTQGINNLSRNFLGIQPNDDQFWNSTTTTTTPPGNIAWSSDQISDHFNSTSSTTHLL 363
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 22311974 22313630 - Lsi02G016510.1 Lsi02g01651 656393

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi02g01651 363 MobiDBLite consensus disorder prediction 119 158 - -
Lsi02g01651 363 ProSitePatterns Zinc finger Dof-type signature. 80 116 IPR003851 GO:0003677|GO:0006355
Lsi02g01651 363 ProSiteProfiles Zinc finger Dof-type profile. 78 132 IPR003851 GO:0003677|GO:0006355
Lsi02g01651 363 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 6 336 IPR045174 GO:0003700|GO:0006355
Lsi02g01651 363 MobiDBLite consensus disorder prediction 137 158 - -
Lsi02g01651 363 MobiDBLite consensus disorder prediction 11 33 - -
Lsi02g01651 363 Pfam Dof domain, zinc finger 78 132 IPR003851 GO:0003677|GO:0006355
Lsi02g01651 363 PANTHER DOF DOMAIN ZINC FINGER PROTEIN 6 336 - -
Lsi02g01651 363 MobiDBLite consensus disorder prediction 10 62 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi02g01651 - - - csv:101212561 518.85
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g01651 Lsi-Chr2:22311974 Lsi03g02101 Lsi-Chr3:32272111 1.04E-52 dispersed
Lsi01g01417 Lsi-Chr1:12314911 Lsi02g01651 Lsi-Chr2:22311974 2.28E-40 wgd
Lsi10g01367 Lsi-Chr10:17825835 Lsi02g01651 Lsi-Chr2:22311974 2.44E-46 wgd
Lsi02g01651 Lsi-Chr2:22311974 Lsi04g00882 Lsi-Chr4:8680085 7.83E-63 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lsi02g00805 CCT 16 176 C2C2-Dof Transcription Factor Family AT1G29160 58.3 9.8e-45 176.8
Lsi01g00243 CCT 6 162 C2C2-Dof Transcription Factor Family AT1G29160 50.9 2.8e-39 158.7
Lsi02g00805 CCT 16 174 C2C2-Dof Transcription Factor Family AT2G34140 56.5 6.8e-43 170.6
Lsi03g02101 CCT,ECH 46 178 C2C2-Dof Transcription Factor Family AT2G37590 68.1 6.6e-42 168.3
Lsi04g00882 . 1 132 C2C2-Dof Transcription Factor Family AT2G37590 64.5 8.0e-40 161.4
Lsi02g01651 . 1 128 C2C2-Dof Transcription Factor Family AT2G37590 63.3 3.4e-38 156.0
Lsi02g01364 . 64 138 C2C2-Dof Transcription Factor Family AT2G37590 89.3 4.9e-37 152.1
Lsi03g01499 . 135 514 C2C2-Dof Transcription Factor Family AT5G39660 52.5 1.2e-81 300.8
Lsi02g01364 . 65 138 C2C2-Dof Transcription Factor Family AT5G02460 90.5 5.3e-38 155.6
Lsi01g01417 CCT,ECH 51 124 C2C2-Dof Transcription Factor Family AT5G02460 87.8 5.9e-37 152.1
Lsi04g00882 . 55 236 C2C2-Dof Transcription Factor Family AT3G55370 50.7 2.1e-41 166.8
Lsi02g01364 . 49 142 C2C2-Dof Transcription Factor Family AT3G55370 76.6 3.4e-39 159.5
Lsi03g02101 CCT,ECH 99 181 C2C2-Dof Transcription Factor Family AT3G55370 79.5 1.2e-36 151.0
Lsi06g01388 CCT 28 328 C2C2-Dof Transcription Factor Family AT5G60850 51.9 9.1e-46 181.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013092 0 0 0 0 0 1 2 1 1 1 1 1 2 1 1 2 1 0 2 1 1 1 1 1 1 1 1 2 1 0 28
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
24849 PF02701 zf-Dof 4.60E-31 No_clan Lsi TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi02g01651 Lsi_Chr02 FPKM 7.09987 8.630203 5.191692 4.741804 21.768219 25.246767 26.142439 0.31587 0.0 0.191449