Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi02g01652 ATGAAATTGTGGCCATTCAAGAATGCCGTTGTCACCGTTCCTGCTTACTTCAATGACTCTCAGCGTCAGGCCACCAAGGACGCCGGAGTCATTGCCGGTCTTAATGTCATGCGAATGATCAACGAGCCTACAGCTGCTGCTATTGCTTATGGACTCGACAAAAAGGCGACCAGTGTTGGCAAGAAGAATGTTCTGATTTTTTATCTGGGTGGAGGAACATTTGATGTCTCTCTCCTCACAATTGAGGAAGGCATTTTCGAGGTGAAGGCAACTGTCGGTGACACCCATCTCGGCCGTGAGGATTTTAACAACATATTGGTTAATCATTTTGTTCAAGAATTCAAGAGGAAGCATAAGAAAGACATTAGTGGAAATCCAAGAGCTCTCATGAAGGTTGAGGACTGCTTGTGA 411 45.26 MKLWPFKNAVVTVPAYFNDSQRQATKDAGVIAGLNVMRMINEPTAAAIAYGLDKKATSVGKKNVLIFYLGGGTFDVSLLTIEEGIFEVKATVGDTHLGREDFNNILVNHFVQEFKRKHKKDISGNPRALMKVEDCL 136
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 22326465 22327019 + Lsi02G016520.1 Lsi02g01652 656394
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi02g01652 136 Pfam Hsp70 protein 7 133 IPR013126 GO:0005524|GO:0140662
Lsi02g01652 136 Gene3D - 55 97 - -
Lsi02g01652 136 Gene3D Actin; Chain A, domain 4 98 132 - -
Lsi02g01652 136 PANTHER HEAT SHOCK PROTEIN 70KDA 6 132 IPR013126 GO:0005524|GO:0140662
Lsi02g01652 136 SUPERFAMILY Actin-like ATPase domain 6 120 IPR043129 -
Lsi02g01652 136 Gene3D - 6 54 - -
Lsi02g01652 136 PRINTS 70kDa heat shock protein signature 72 82 - -
Lsi02g01652 136 PRINTS 70kDa heat shock protein signature 9 29 - -
Lsi02g01652 136 PANTHER HEAT SHOCK COGNATE 70 KDA PROTEIN 1 6 132 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g01652 Lsi-Chr2:22326465 Lsi11g00825 Lsi-Chr11:10226844 1.08E-69 dispersed
Lsi02g01652 Lsi-Chr2:22326465 Lsi02g01657 Lsi-Chr2:22358510 3.47E-73 proximal
Lsi01g01415 Lsi-Chr1:12295409 Lsi02g01652 Lsi-Chr2:22326465 1.90E-76 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi02g01652 K03283 - csv:101211905 230.335