Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi02g01656 ATGGAATTTGCCGACGAGCTCACGGCCGGAGCCACCGCCTCCAGTTCCAACCGCCACAAGCCCTCCGATACTAGAGACAGCGGCGAGCTCTCATCCTCTGACAACGACACCGAAGATGTATTTTCTTCCTCCTCCTCGTTTCTTTTTTCGCTTTCCATTCTTAAATTTCTTGCATCTCATTCCGTCTTCTCTGCTTCCAATCCTCTCAAACGCAAAGCTTATAGCACCGTCTTCTTTATTGCTTTGGTTTTACGGAAACGGAGGCTTCCTGAGCTAGATACGTTGCTCAAGTGGAGCTCCACGTGTGTGTTTAGCTCAATTATTGCTGTTTTTTTCCCCCATCGGAGTGGAAGTAGTGAGAAGCTGTGGTACTTAGAAGAAGTTAACCGATTTCCATTTTCGAACATTTATATCGACAGTAGATTTTATTGTGCTAATATAACGGTACATCCTGTTTTTTGTAACATGCCTGCTTCACTTGCACCACCAGTGTCTCCCATTCTTCCTCTGCAAAGTAAATGTAATGTAGCAATTCAGGCTGATATGGATGATAAATTGGAGACAATACAAAATATATGTCAGAAAATTGTGGACACCACAAACTTGTACTCATTTTCTAAATTGGATGACCAGCAAGTATATTCTCTTATGAGGCTGAGGGAAATTTCTCATCGGATTATTAATGACCGTGATTCAAGGGTGACAAGAAATGATGTGATTAGTGCTATGTGTTTTTACATCAATAGGCTGGCAGGTAAGTGCAAGGATATTGTTGACATTTTGAATAAGATGTCATATAAAGACTTGGATGACCAGCAAATGCAACAGCTATTGAGATTGAAAGAGCTCCTATGCGGGATTGTTGATGGAGCTAAAGACGTGGAAACTGAACCTTCCCATATTGTTGAACAGGGCATGGTAAGTGATATGTGGACGACAGAGAGTTTGGAGGTCGAGCCACTTGATTCCTGCAATGATGACGTACCACTTGGAGAGACACAAATTGTAGTGGTTGAAGATGAACAGGCGGTAGCTGAAGCCAGGCTCGAGAATCAATATTGTGACCCACATGTTAAACACTGTGTCAGTTGGCCACCAAATGGTAGCTTAACCTTAGAGTGGGTTGTAGAGATGATGAAAACTCTCGAGCTGTCTTCAAGAATCTATTCGCCTGCAGAGTTTCAACATATCATGCCAGTTTCTGTGGTAGATTCAATACTTGATGTAGCTGCGAGTATCCTTCATAAGGAACCGAACTGCGTGGAAATCGACTGCCATGGAGAAGTTTCAAAAGTGGTTATAGTTGGGGACATTCATGGACATTATCATGACTTACTTCATCTATTCGAACTTGCTAATTTGCCATCTAAAAGCCAGTATTTCATTTTTAATGGTAATTATGTGGACAGAGGAGCATGGGGACTCGAGGTGTTTTTGGTCTTATTGGCGTGGAAGATCTTGATGCCTGATAGAGTATATATGCTCCGTGGAAATCACGAAACCAGAATTTGTACATCATCCTACGGTTTTGAGAAAGAAGTAAGAACAAAATATGGCGAGCAAGGTGAAAAAGTATATCACAGGTGCTTGGAAACGTTTAAGGAACTTCCTTTGGCTGCAATTATTGCTGGAAAAGTATATACAACACATGGAGGGTTATTTCGTAAGCCATGCAATCCTGATGTGCAGAATGACAAGGAAAGGAAAATGCAGAAGCTGGAGATTGGATCCTTGCAAGACTTATCTAAGCTTGAAAGGTTTTTTATCGATATTCCAACTGAAGATGAAGATCCAAATATAATTTTGGCAGATGTATTGTGGTCGGATCCTTCTAAGGTAGATGGTTTAAGGGAAAATCAAGCCAGAGGAGCAGGTCTATTATGGGGTCCTGATTCTACTGAAGCATTCTTAAAGCTGTCCAATTTAAAGTTGATCATTAGGTCACATGAAGGCCCAGATTCAAGGGACGGTAAGATTGATTTTGATGATATGATAATGGGCTATAGCACAGATCACGACATAGAATCAGGGAAATTATATACTCTATTTAGCGCTCCAGATTTCCCTCAGTTTGGTCGGAAGAGTTACAATAATGAGGGAGCATTTGCTACTTTGAAGCATCCGGATTTTGAAACTCCATCCTTCCATACATTTAAAGCTGTAGATAAACCGAAGGTTCATGAACTTCAAAGTACAATACTGCATGCTAGGATAGACGTTTGCTATTTTGGTTGTGAAGGACATGATGTAGATTTAGATTTGACATTAATGGCTCTAGCTGATGCTGTCTCTTCTAACAACTCTAGTCCTATTGAGATTCATTCTGGGGTTGATTTTGAGGCATTAGGCATATTAAACCCACCTTCTTGGAGCATTACATTGACAGATGATACTACAGGTACCCAAAATGTTCAGATTCCGAAGGCTCCCATGGTAGAAGGGCTGCCTTTGCCGCCTAGCATAGAGGAACCTCATAAGGCTGCTTATGAATACTTCTTGGAGCTCATTGCAGGACTGAAATTTATGCTCCAAACAACGGAAGATGATTTAAGAGTTTGCAGCTCTATTTATGTCCTCTCCGGTCTCGTTTCTTGGCTCAGTTTTAGCGATCTTCCTCTTTGTAATGTCAAAGGATAA 2637 41.22 MEFADELTAGATASSSNRHKPSDTRDSGELSSSDNDTEDVFSSSSSFLFSLSILKFLASHSVFSASNPLKRKAYSTVFFIALVLRKRRLPELDTLLKWSSTCVFSSIIAVFFPHRSGSSEKLWYLEEVNRFPFSNIYIDSRFYCANITVHPVFCNMPASLAPPVSPILPLQSKCNVAIQADMDDKLETIQNICQKIVDTTNLYSFSKLDDQQVYSLMRLREISHRIINDRDSRVTRNDVISAMCFYINRLAGKCKDIVDILNKMSYKDLDDQQMQQLLRLKELLCGIVDGAKDVETEPSHIVEQGMVSDMWTTESLEVEPLDSCNDDVPLGETQIVVVEDEQAVAEARLENQYCDPHVKHCVSWPPNGSLTLEWVVEMMKTLELSSRIYSPAEFQHIMPVSVVDSILDVAASILHKEPNCVEIDCHGEVSKVVIVGDIHGHYHDLLHLFELANLPSKSQYFIFNGNYVDRGAWGLEVFLVLLAWKILMPDRVYMLRGNHETRICTSSYGFEKEVRTKYGEQGEKVYHRCLETFKELPLAAIIAGKVYTTHGGLFRKPCNPDVQNDKERKMQKLEIGSLQDLSKLERFFIDIPTEDEDPNIILADVLWSDPSKVDGLRENQARGAGLLWGPDSTEAFLKLSNLKLIIRSHEGPDSRDGKIDFDDMIMGYSTDHDIESGKLYTLFSAPDFPQFGRKSYNNEGAFATLKHPDFETPSFHTFKAVDKPKVHELQSTILHARIDVCYFGCEGHDVDLDLTLMALADAVSSNNSSPIEIHSGVDFEALGILNPPSWSITLTDDTTGTQNVQIPKAPMVEGLPLPPSIEEPHKAAYEYFLELIAGLKFMLQTTEDDLRVCSSIYVLSGLVSWLSFSDLPLCNVKG 878
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 22349892 22358102 + Lsi02G016560.1 Lsi02g01656 656398
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi02g01656 878 MobiDBLite consensus disorder prediction 1 35 - -
Lsi02g01656 878 ProSitePatterns Serine/threonine specific protein phosphatases signature. 495 500 IPR006186 GO:0016787
Lsi02g01656 878 SUPERFAMILY Metallo-dependent phosphatases 376 730 IPR029052 -
Lsi02g01656 878 Pfam Calcineurin-like phosphoesterase 431 652 IPR004843 GO:0016787
Lsi02g01656 878 Gene3D - 330 735 IPR029052 -
Lsi02g01656 878 PANTHER SERINE/THREONINE-PROTEIN PHOSPHATASE 185 850 - -
Lsi02g01656 878 SMART pp2a_7 398 722 IPR006186 GO:0016787
Lsi02g01656 878 PRINTS Serine/threonine phosphatase family signature 584 611 IPR006186 GO:0016787
Lsi02g01656 878 PRINTS Serine/threonine phosphatase family signature 431 458 IPR006186 GO:0016787
Lsi02g01656 878 PRINTS Serine/threonine phosphatase family signature 678 694 IPR006186 GO:0016787
Lsi02g01656 878 PRINTS Serine/threonine phosphatase family signature 531 557 IPR006186 GO:0016787
Lsi02g01656 878 PRINTS Serine/threonine phosphatase family signature 494 518 IPR006186 GO:0016787
Lsi02g01656 878 PRINTS Serine/threonine phosphatase family signature 461 488 IPR006186 GO:0016787
Lsi02g01656 878 PANTHER SERINE/THREONINE-PROTEIN PHOSPHATASE 5-RELATED 185 850 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g01656 Lsi-Chr2:22349892 Lsi07g01035 Lsi-Chr7:15688850 3.50E-133 dispersed
Lsi02g01656 Lsi-Chr2:22349892 Lsi11g01649 Lsi-Chr11:24801333 6.58E-52 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi02g01656 K04460 - csv:101211172 1304.66