Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi02g01657 ATGGCCGGTAAAGGAGAAGGTCCGGCGATCGGAATCGATCTTGGAACCACGTACTCTTGCGTCGGTGTGTGGCAGCATGATCGAGTTGAGATCATAGCCAACGACCAGGGCAACAGGACCACGCCGTCGTATGTTGCTTTCACCGACACTGAGCGCTTGATCGGTGATGCGGCCAAGAATCAGGTCGCCATGAACCCTATTAACACCGTTTTTGATGCTAAGCGTTTAATTGGCCGAAGATTTAGCGATTCATCGGTCCAGAGTGATATCAAGCTCTGGCCATTTAAAGTTATTCCCGGCCCGGGCGACAAGCCCATGATTGTTGTGAACTACAAGGGTGAAGAGAAGCAGTTTTCCGCGGAAGAAATCTCTTCTATGGTGCTCATAAAGATGAAGGAGATTGCCGAGGCGTATCTGGGCACGACAGTGAAGAACGCCGTCGTCACTGTCCCAGCCTACTTCAACGATTCGCAGAGACAGGCCACCAAGGATGCCGGGGTCATTTCAGGTCTAAATGTGATGCGTATCATCAATGAACCAACTGCGGCCGCCATTGCTTACGGTCTCGACAAGAAGTCCAGCAGCTCCGGCGAAAAGAATGTTCTAATTTTTGATTTGGGTGGTGGTACCTTTGATGTTTCATTGCTCACAATCGAAGAAGGTATTTTTGAGGTGAAGGCAACTGCAGGAGACACTCATTTGGGTGGTGAAGATTTTGACAACAGATTGGTTAACCACTTCGTGCAAGAATTCAAGAGAAAGAATAAGAAAGACATTAGTGGGAATCCCAGGGCTCTTAGGAGGTTGAGAACTGCTTGTGAAAGGGCTAAGAGGACACTTTCCTCCACAGCTCAAACTACAATTGAGATTGACTCTCTTTACGAAGGAATTGACTTCTATTCAACCATTACCCGTGCTAGATTTGAGGAACTCAATATGGATCTTTTCAGAAAGTGTATGGAACCAGTTGAGAAGTGCTTGAGAGATGCCAAGATGGACAAAAGCACTGTCCATGATGTTGTTCTTGTTGGTGGTTCCACTAGAATTCCCAAGGTGCAGCAATTGTTGCAGGATTTCTTCAATGGCAAAGAGCTTTGCAAGAGTATCAACCCTGATGAAGCTGTTGCCTATGGAGCTGCTGTCCAAGCTGCCATTTTGAGCGGTGAGGGTAACGAGAAGGTTCAAGATCTTCTGCTTTTGGATGTTACCCCTCTTTCCCTTGGACTTGAAACAGCCGGCGGTGTTATGACTGTCTTGATTCCAAGGAATACCACCATCCCCACCAAGAAAGAACAAGTTTTCTCTACATACTCTGACAATCAACCTGGTGTTTTGATCCAAGTCTATGAAGGTGAGAGGGCGAGAACTCGCGACAACAACTTGCTTGGTAAATTTGAGCTCTCTGGAATCCCTCCAGCTCCAAGAGGTGTTCCTCAGATCACAGTCTGCTTTGACATTGACGCCAACGGTATTTTGAATGTTTCTGCTGAGGATAAAACCACCGGACAGAAGAACAAGATCACAATCACCAACGACAAGGGGCGGTTGTCGAAGGAAGAGATTGAGAAGATGGTGCAAGAAGCAGAGAAATACAAGGCTGACGATGAAGAACACAAGAAGAAGGTTGAAGCTAAAAACTCCTTGGAGAACTATGCTTACAACATGAGAAACACTGTGAGGGACGAGAAGTTCAGCTCTAAATTGGATCCGGCAGACAAGAAGAAGATTGAGGATGCCATTGAACAGGCAATCCAGTGGCTTGACAACAACCAACTTGCTGAGGCTGATGAGTTTGAAGACAAAATGAAGGAGCTTGAGAGTATTTGCAACCCAATTGTTGCTAAGATGTACCAGGGTGCTGGTGGACCTGGCATGGGCGGCGCTGGTATGGATGACGATGATGCTCCTCCTCCGTCCGGTGGGAGCGGCGCCGGTCCTAAAATTGAGGAAGTTGACTAA 1959 47.27 MAGKGEGPAIGIDLGTTYSCVGVWQHDRVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPINTVFDAKRLIGRRFSDSSVQSDIKLWPFKVIPGPGDKPMIVVNYKGEEKQFSAEEISSMVLIKMKEIAEAYLGTTVKNAVVTVPAYFNDSQRQATKDAGVISGLNVMRIINEPTAAAIAYGLDKKSSSSGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRLVNHFVQEFKRKNKKDISGNPRALRRLRTACERAKRTLSSTAQTTIEIDSLYEGIDFYSTITRARFEELNMDLFRKCMEPVEKCLRDAKMDKSTVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEAVAYGAAVQAAILSGEGNEKVQDLLLLDVTPLSLGLETAGGVMTVLIPRNTTIPTKKEQVFSTYSDNQPGVLIQVYEGERARTRDNNLLGKFELSGIPPAPRGVPQITVCFDIDANGILNVSAEDKTTGQKNKITITNDKGRLSKEEIEKMVQEAEKYKADDEEHKKKVEAKNSLENYAYNMRNTVRDEKFSSKLDPADKKKIEDAIEQAIQWLDNNQLAEADEFEDKMKELESICNPIVAKMYQGAGGPGMGGAGMDDDDAPPPSGGSGAGPKIEEVD 652
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 22358510 22361468 - Lsi02G016570.1 Lsi02g01657 656399
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi02g01657 652 Gene3D Actin; Chain A, domain 4 235 318 - -
Lsi02g01657 652 Gene3D Substrate Binding Domain Of DNAk; Chain A, domain 1 391 544 IPR029047 -
Lsi02g01657 652 SUPERFAMILY Heat shock protein 70kD (HSP70), peptide-binding domain 392 549 IPR029047 -
Lsi02g01657 652 PANTHER SHOCK PROTEIN, PUTATIVE-RELATED 1 628 - -
Lsi02g01657 652 SUPERFAMILY Actin-like ATPase domain 197 388 IPR043129 -
Lsi02g01657 652 Coils Coil 521 541 - -
Lsi02g01657 652 Gene3D - 71 126 - -
Lsi02g01657 652 PRINTS 70kDa heat shock protein signature 58 66 - -
Lsi02g01657 652 PRINTS 70kDa heat shock protein signature 396 415 - -
Lsi02g01657 652 PRINTS 70kDa heat shock protein signature 8 21 - -
Lsi02g01657 652 PRINTS 70kDa heat shock protein signature 36 48 - -
Lsi02g01657 652 PRINTS 70kDa heat shock protein signature 209 219 - -
Lsi02g01657 652 PRINTS 70kDa heat shock protein signature 337 353 - -
Lsi02g01657 652 PRINTS 70kDa heat shock protein signature 146 166 - -
Lsi02g01657 652 PRINTS 70kDa heat shock protein signature 369 389 - -
Lsi02g01657 652 PRINTS 70kDa heat shock protein signature 477 493 - -
Lsi02g01657 652 ProSitePatterns Heat shock hsp70 proteins family signature 3. 340 354 IPR018181 -
Lsi02g01657 652 Gene3D - 10 384 - -
Lsi02g01657 652 Pfam Hsp70 protein 9 618 IPR013126 GO:0005524|GO:0140662
Lsi02g01657 652 Gene3D - 545 619 IPR029048 -
Lsi02g01657 652 PANTHER HEAT SHOCK PROTEIN 70KDA 1 628 IPR013126 GO:0005524|GO:0140662
Lsi02g01657 652 ProSitePatterns Heat shock hsp70 proteins family signature 1. 12 19 IPR018181 -
Lsi02g01657 652 SUPERFAMILY Heat shock protein 70kD (HSP70), C-terminal subdomain 543 625 IPR029048 -
Lsi02g01657 652 ProSitePatterns Heat shock hsp70 proteins family signature 2. 203 216 IPR018181 -
Lsi02g01657 652 CDD HSPA1-2_6-8-like_NBD 9 387 - -
Lsi02g01657 652 Gene3D - 192 366 - -
Lsi02g01657 652 SUPERFAMILY Actin-like ATPase domain 8 191 IPR043129 -
Lsi02g01657 652 MobiDBLite consensus disorder prediction 617 652 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g01415 Lsi-Chr1:12295409 Lsi02g01657 Lsi-Chr2:22358510 0 dispersed
Lsi02g01657 Lsi-Chr2:22358510 Lsi11g00825 Lsi-Chr11:10226844 0 dispersed
Lsi04g01917 Lsi-Chr4:26321640 Lsi02g01657 Lsi-Chr2:22358510 1.46E-63 dispersed
Lsi02g01652 Lsi-Chr2:22326465 Lsi02g01657 Lsi-Chr2:22358510 3.47E-73 proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi02g01657 K03283 - csv:101210925 1217.22