Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi02g01665 AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGATGGAGAAGGCAAGTAAAATGTTTGAGAAGGCAAAGCCATATTTAGGAGCAATTGCATTAAGATTTGCTTCAGCAGGAATGTCCATTATTTCAAAGGCTGCTTTAAACCAAGGAATGAACCAACTTGTTACCATTGTTTATCGTTACTCTGTTGGTGCCATTGTTGTTGCTCCTTTTGCTTTTGTCTTGGATAGGAAAATAAGACCAAAGATGACTCTCCCCATCTTTGCCAAGATTCTTCTCCTCGGCTTACTCGAGCCTGTAATAGCCCAGAGCTTGATTTACTCTGGTACTAAATACACAACAGCAACTTTTGCAACAGCCATGTGCAATATTCTTCCGGCCTTTGCATTTCTAATGGCTTGGATTTGCAGAATGGAGAAGGTGAATATTAGAAGATTAAGAAGCCAGGCAAAGATTTTAGGGACTTTAGTTACAGTTGGAGGAGCAATGATGATGACTCTTATAAAAGGACCTTTATTGAGTTTGCCTTGGACCAAACAAAATTTCAATCCTCATTCTTATTCCACTCTTCCAAATAACCAACAACCTCTTAAAGCTGCCATTGTTATTACCATTTCAACCTTAGCATTTGAATGGGACAATCCATCTGCATGGGCTTTACATGCAGATTCCATACTCTTAGCTGCCCTCTATGGTGGCATAATATCTTCTGGAATTGCCTATTATCTTCAAGGAGTAGTGGTGAAGTTAAAAGGACCTGTGTTTGTAACTGCATTCAATCCTCTCAGCATGGTTATAGTTGCTTGTTTTAACTTTCATAAACATAAATGGCTTCTTTCAAGCACTCCACCAAAGGTCATTGGAGCAGTTGTGATAATTATAGGCCTTTACTTGGTTTTGTGGGGCAAGAGCAAAGATAAACTTCCATTCAAAGTTGGGAATGATAATAATTATAATAACAATGAAGAATTGCCAACTTCACTCCAAAACTCAACAACCACAAACCAGCAGCTGAAGCCTTTAGATCAACAATAA 1059 39.19 REREREREREREREREREREMEKASKMFEKAKPYLGAIALRFASAGMSIISKAALNQGMNQLVTIVYRYSVGAIVVAPFAFVLDRKIRPKMTLPIFAKILLLGLLEPVIAQSLIYSGTKYTTATFATAMCNILPAFAFLMAWICRMEKVNIRRLRSQAKILGTLVTVGGAMMMTLIKGPLLSLPWTKQNFNPHSYSTLPNNQQPLKAAIVITISTLAFEWDNPSAWALHADSILLAALYGGIISSGIAYYLQGVVVKLKGPVFVTAFNPLSMVIVACFNFHKHKWLLSSTPPKVIGAVVIIIGLYLVLWGKSKDKLPFKVGNDNNYNNNEELPTSLQNSTTTNQQLKPLDQQ 352
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 22456647 22460248 + Lsi02G016650.1 Lsi02g01665 656407
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi02g01665 352 Coils Coil 3 27 - -
Lsi02g01665 352 Pfam EamA-like transporter family 33 173 IPR000620 GO:0016020|GO:0016021
Lsi02g01665 352 SUPERFAMILY Multidrug resistance efflux transporter EmrE 231 313 - -
Lsi02g01665 352 SUPERFAMILY Multidrug resistance efflux transporter EmrE 67 175 - -
Lsi02g01665 352 PANTHER WAT1-RELATED PROTEIN 213 319 IPR030184 GO:0016021|GO:0022857
Lsi02g01665 352 PANTHER WAT1-RELATED PROTEIN 29 216 IPR030184 GO:0016021|GO:0022857
Lsi02g01665 352 PANTHER WAT1-RELATED PROTEIN 213 319 - -
Lsi02g01665 352 PANTHER WAT1-RELATED PROTEIN 29 216 - -
Lsi02g01665 352 MobiDBLite consensus disorder prediction 1 23 - -
Lsi02g01665 352 MobiDBLite consensus disorder prediction 329 352 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Lsi02g01665 Lsi04g00874 CCT
Lsi02g01665 Lsi04g00874 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g01665 Lsi-Chr2:22456647 Lsi02g01668 Lsi-Chr2:22494244 9.69E-113 dispersed
Lsi02g01665 Lsi-Chr2:22456647 Lsi02g01666 Lsi-Chr2:22473284 9.30E-61 tandem
Lsi01g01401 Lsi-Chr1:12138098 Lsi02g01665 Lsi-Chr2:22456647 9.16E-102 wgd
Lsi02g01665 Lsi-Chr2:22456647 Lsi04g00873 Lsi-Chr4:8539635 2.16E-112 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi02g01665 - - csv:101208640 513.072