Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi02g01668 ATGGAGCATCCCGCCGGAATGTTGAGTCGGGCGAAGCCATTCATTGCAGTGATTCTTCAGCAGTTCATCACTGCCGGAATGGTCATCATTTCTAAGTTTGCTCTCAACCAAGGGCTCAATCAGCACGTTTTAGTCGTCTACCGATACACCATTGCTACGGTTGTCGTTGCTCCGTTTGCTTTCGTCTTTGAGAGGAAAGTGAGACCGAAGATGACTTGGTCCATTTTTGGGAAGGTTGTGTTGTTGGGACTATTAGAGCCTGCGCTCGACCAAAACTTGTATTATACAGGTATGAAGTACACTACAGCAACCTTTGCATCCGCTATGACTAATATGGTCCCTGGCCTTGTCTTCCTCATGGCTTGGATGGTTCGGCTCGAGAAGGTCGACGTAAGGCAGATGTCAAGCCAGGCAAAGATATTAGGGACAGTGGTGGCAGTGGGAGGGGCAATGATAATGACTCTAGTAAGAGGACCAATCTTGAATCTGCCATGGACAAATCACAACCTCCATGACCATTCTGCAACTGCAGCTAACCAGCAAGATCTTCTAAAGGGTTCTCTCATGATCACTATTGGTTGTATTCTTTGGTCTGTTTTCAATGTTCTTCAGGCAATTACAGTAAAGGTATACCCAGCACAACTCTCCTTAACAGCTTTGATATGCTTCACCGGCGCCATACAAGCCTCAGTGATAGCTTTTGCAATGGAAGGGCACAAACCTGCTGCCTGGTCATTACATTTAGATTCAACCCTCTTAGCTCCTTTGTATAGTGGAATCATGTCTTCAGGGGTTTCATATACTATCCAAGCAGCAGTAATGAAAAGGAAAGGGCCAGTTTTTGCAAGTACATTTAGTCCCCTGAGCATGATTATTGTTGCAATCATTAGTTCATTCGCATTATCCGAGATATTATACTTTGGAAGGGTTATTGGAGCAGCTGTAATTATTACAGGTCTTTATTTGGTTCTGTGGGGAAAAATCAAGGATCAGGCTCTATACAAGTCAGATGGTGAGAAGATGGCCCTATCAGATCAGAAACTGACTGCCATAACTGACAAACCTAAGACTTCAGATAAAGAACTAGGAGTTGATCTTGCTAGGATAAAAACAGTGGATGATTCTTCTCTCACACATTATAATAGAAATTCTGGAATATATGTGAATGAAGCCCAAGGAGCTAAAGTGAGCTTATGA 1197 43.44 MEHPAGMLSRAKPFIAVILQQFITAGMVIISKFALNQGLNQHVLVVYRYTIATVVVAPFAFVFERKVRPKMTWSIFGKVVLLGLLEPALDQNLYYTGMKYTTATFASAMTNMVPGLVFLMAWMVRLEKVDVRQMSSQAKILGTVVAVGGAMIMTLVRGPILNLPWTNHNLHDHSATAANQQDLLKGSLMITIGCILWSVFNVLQAITVKVYPAQLSLTALICFTGAIQASVIAFAMEGHKPAAWSLHLDSTLLAPLYSGIMSSGVSYTIQAAVMKRKGPVFASTFSPLSMIIVAIISSFALSEILYFGRVIGAAVIITGLYLVLWGKIKDQALYKSDGEKMALSDQKLTAITDKPKTSDKELGVDLARIKTVDDSSLTHYNRNSGIYVNEAQGAKVSL 398
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 22494244 22497234 + Lsi02G016680.1 Lsi02g01668 656410
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi02g01668 398 SUPERFAMILY Multidrug resistance efflux transporter EmrE 248 328 - -
Lsi02g01668 398 PANTHER WAT1-RELATED PROTEIN 9 339 IPR030184 GO:0016021|GO:0022857
Lsi02g01668 398 Pfam EamA-like transporter family 185 324 IPR000620 GO:0016020|GO:0016021
Lsi02g01668 398 Pfam EamA-like transporter family 14 152 IPR000620 GO:0016020|GO:0016021
Lsi02g01668 398 SUPERFAMILY Multidrug resistance efflux transporter EmrE 47 155 - -
Lsi02g01668 398 PANTHER WAT1-RELATED PROTEIN 9 339 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g01401 Lsi-Chr1:12138098 Lsi02g01668 Lsi-Chr2:22494244 2.86E-138 dispersed
Lsi02g01665 Lsi-Chr2:22456647 Lsi02g01668 Lsi-Chr2:22494244 9.69E-113 dispersed
Lsi02g01668 Lsi-Chr2:22494244 Lsi04g00873 Lsi-Chr4:8539635 2.78E-149 dispersed
Lsi04g01840 Lsi-Chr4:25522556 Lsi02g01668 Lsi-Chr2:22494244 4.67E-44 dispersed
Lsi07g01289 Lsi-Chr7:18831423 Lsi02g01668 Lsi-Chr2:22494244 1.83E-36 dispersed
Lsi10g00701 Lsi-Chr10:9824531 Lsi02g01668 Lsi-Chr2:22494244 4.02E-63 dispersed
Lsi02g01666 Lsi-Chr2:22473284 Lsi02g01668 Lsi-Chr2:22494244 4.28E-91 proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi02g01668 - - csv:101222430 684.1