Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lsi02g01668 | ATGGAGCATCCCGCCGGAATGTTGAGTCGGGCGAAGCCATTCATTGCAGTGATTCTTCAGCAGTTCATCACTGCCGGAATGGTCATCATTTCTAAGTTTGCTCTCAACCAAGGGCTCAATCAGCACGTTTTAGTCGTCTACCGATACACCATTGCTACGGTTGTCGTTGCTCCGTTTGCTTTCGTCTTTGAGAGGAAAGTGAGACCGAAGATGACTTGGTCCATTTTTGGGAAGGTTGTGTTGTTGGGACTATTAGAGCCTGCGCTCGACCAAAACTTGTATTATACAGGTATGAAGTACACTACAGCAACCTTTGCATCCGCTATGACTAATATGGTCCCTGGCCTTGTCTTCCTCATGGCTTGGATGGTTCGGCTCGAGAAGGTCGACGTAAGGCAGATGTCAAGCCAGGCAAAGATATTAGGGACAGTGGTGGCAGTGGGAGGGGCAATGATAATGACTCTAGTAAGAGGACCAATCTTGAATCTGCCATGGACAAATCACAACCTCCATGACCATTCTGCAACTGCAGCTAACCAGCAAGATCTTCTAAAGGGTTCTCTCATGATCACTATTGGTTGTATTCTTTGGTCTGTTTTCAATGTTCTTCAGGCAATTACAGTAAAGGTATACCCAGCACAACTCTCCTTAACAGCTTTGATATGCTTCACCGGCGCCATACAAGCCTCAGTGATAGCTTTTGCAATGGAAGGGCACAAACCTGCTGCCTGGTCATTACATTTAGATTCAACCCTCTTAGCTCCTTTGTATAGTGGAATCATGTCTTCAGGGGTTTCATATACTATCCAAGCAGCAGTAATGAAAAGGAAAGGGCCAGTTTTTGCAAGTACATTTAGTCCCCTGAGCATGATTATTGTTGCAATCATTAGTTCATTCGCATTATCCGAGATATTATACTTTGGAAGGGTTATTGGAGCAGCTGTAATTATTACAGGTCTTTATTTGGTTCTGTGGGGAAAAATCAAGGATCAGGCTCTATACAAGTCAGATGGTGAGAAGATGGCCCTATCAGATCAGAAACTGACTGCCATAACTGACAAACCTAAGACTTCAGATAAAGAACTAGGAGTTGATCTTGCTAGGATAAAAACAGTGGATGATTCTTCTCTCACACATTATAATAGAAATTCTGGAATATATGTGAATGAAGCCCAAGGAGCTAAAGTGAGCTTATGA | 1197 | 43.44 | MEHPAGMLSRAKPFIAVILQQFITAGMVIISKFALNQGLNQHVLVVYRYTIATVVVAPFAFVFERKVRPKMTWSIFGKVVLLGLLEPALDQNLYYTGMKYTTATFASAMTNMVPGLVFLMAWMVRLEKVDVRQMSSQAKILGTVVAVGGAMIMTLVRGPILNLPWTNHNLHDHSATAANQQDLLKGSLMITIGCILWSVFNVLQAITVKVYPAQLSLTALICFTGAIQASVIAFAMEGHKPAAWSLHLDSTLLAPLYSGIMSSGVSYTIQAAVMKRKGPVFASTFSPLSMIIVAIISSFALSEILYFGRVIGAAVIITGLYLVLWGKIKDQALYKSDGEKMALSDQKLTAITDKPKTSDKELGVDLARIKTVDDSSLTHYNRNSGIYVNEAQGAKVSL | 398 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
2 | 22494244 | 22497234 | + | Lsi02G016680.1 | Lsi02g01668 | 656410 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lsi02g01668 | 398 | SUPERFAMILY | Multidrug resistance efflux transporter EmrE | 248 | 328 | - | - | |
Lsi02g01668 | 398 | PANTHER | WAT1-RELATED PROTEIN | 9 | 339 | IPR030184 | GO:0016021|GO:0022857 | |
Lsi02g01668 | 398 | Pfam | EamA-like transporter family | 185 | 324 | IPR000620 | GO:0016020|GO:0016021 | |
Lsi02g01668 | 398 | Pfam | EamA-like transporter family | 14 | 152 | IPR000620 | GO:0016020|GO:0016021 | |
Lsi02g01668 | 398 | SUPERFAMILY | Multidrug resistance efflux transporter EmrE | 47 | 155 | - | - | |
Lsi02g01668 | 398 | PANTHER | WAT1-RELATED PROTEIN | 9 | 339 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lsi01g01401 | Lsi-Chr1:12138098 | Lsi02g01668 | Lsi-Chr2:22494244 | 2.86E-138 | dispersed | |
Lsi02g01665 | Lsi-Chr2:22456647 | Lsi02g01668 | Lsi-Chr2:22494244 | 9.69E-113 | dispersed | |
Lsi02g01668 | Lsi-Chr2:22494244 | Lsi04g00873 | Lsi-Chr4:8539635 | 2.78E-149 | dispersed | |
Lsi04g01840 | Lsi-Chr4:25522556 | Lsi02g01668 | Lsi-Chr2:22494244 | 4.67E-44 | dispersed | |
Lsi07g01289 | Lsi-Chr7:18831423 | Lsi02g01668 | Lsi-Chr2:22494244 | 1.83E-36 | dispersed | |
Lsi10g00701 | Lsi-Chr10:9824531 | Lsi02g01668 | Lsi-Chr2:22494244 | 4.02E-63 | dispersed | |
Lsi02g01666 | Lsi-Chr2:22473284 | Lsi02g01668 | Lsi-Chr2:22494244 | 4.28E-91 | proximal |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lsi02g01668 | - | - | csv:101222430 | 684.1 |