Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi02g01671 ATGGATCCTAAATCTCCTCGGCACCTATTCAACGGCAACTATGTTTCATCACCGCCACACACGTGGCAGCTTGCCAATGCTCCCATCCTCAAGCTGGTGTGTCACCGGCCGGTGCTCGTAGTATACCCCTTACTGTTTATAATTTTGGCAGATAAGTTAACGGACGGTGGTTCTGCGACGCCGTCGGGGTTGATAGTCGCATCTCTGGCTCATGCTTTTGCGTTCTTTGTGGCGGTCTCCGTCGGAGCTAATATCTCCGGCGGCCATGTAAATCCGGCAGTTACATTTGGTGCGCTTATTGGTGGAAACATATCGTTCTTTAGAAGTATAATGTATTGGATCGCTCAATTGCTTGGCTCTGTTGTTGCGTGCTTCCTTCTTAAGTTTGCGACCGGTGGAAAGGTAACACCAGCATTTGCCCTGTCATCAGGAGTTTCTGTGTGGAATGCATTTATATTTGAGGCAGTGATGACTTTTGGATTAGTATATACAGTGTATGCAACAGCAATAGATCCAAAGAGGGAGAATTTGGGAATCATTGCCCCAATTTCTATTGGTTTCATTGTTGGTGCTAACATTTTGGTTGGTGGTGCTTTTGATGGCGCTTCCATGAACCCTGCAGTCTCCTTTGGCCCTGCTGTAGTCACCCGGTCATGGACCCATCACTGGGTTTACTGGCTTGGTCCTATGGCTGGTGCAGCCATTGCTACCATTGTCTATGACACCCTCTTTATCTCAGACTCCACGCATGATCCTCTTACTCAGTATAATGATTTCTAG 780 47.44 MDPKSPRHLFNGNYVSSPPHTWQLANAPILKLVCHRPVLVVYPLLFIILADKLTDGGSATPSGLIVASLAHAFAFFVAVSVGANISGGHVNPAVTFGALIGGNISFFRSIMYWIAQLLGSVVACFLLKFATGGKVTPAFALSSGVSVWNAFIFEAVMTFGLVYTVYATAIDPKRENLGIIAPISIGFIVGANILVGGAFDGASMNPAVSFGPAVVTRSWTHHWVYWLGPMAGAAIATIVYDTLFISDSTHDPLTQYNDF 259
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 22504748 22508390 - Lsi02G016710.1 Lsi02g01671 656413
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi02g01671 259 Pfam Major intrinsic protein 53 240 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lsi02g01671 259 Gene3D Glycerol uptake facilitator protein. 37 258 IPR023271 -
Lsi02g01671 259 PRINTS Major intrinsic protein family signature 71 95 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lsi02g01671 259 PRINTS Major intrinsic protein family signature 153 171 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lsi02g01671 259 PRINTS Major intrinsic protein family signature 223 243 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lsi02g01671 259 PRINTS Major intrinsic protein family signature 108 127 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lsi02g01671 259 PRINTS Major intrinsic protein family signature 186 208 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lsi02g01671 259 PANTHER MAJOR INTRINSIC PROTEIN-RELATED 49 255 - -
Lsi02g01671 259 CDD MIP 55 243 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lsi02g01671 259 ProSitePatterns MIP family signature. 89 97 IPR022357 -
Lsi02g01671 259 PANTHER AQUAPORIN-8 49 255 IPR034294 -
Lsi02g01671 259 SUPERFAMILY Aquaporin-like 53 254 IPR023271 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g01671 Lsi-Chr2:22504748 Lsi02g02816 Lsi-Chr2:34324196 4.67E-73 dispersed
Lsi02g01671 Lsi-Chr2:22504748 Lsi01g01292 Lsi-Chr1:11208708 2.42E-89 transposed
Lsi02g01671 Lsi-Chr2:22504748 Lsi03g01989 Lsi-Chr3:31267990 1.45E-89 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi02g01671 K09873 - csv:101222909 374.785