Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi02g01675 ATGGAGATTACATACTCATCACCTAGCGCCACCAGTCTTGCTTTCTCTAATTCTGCTCTTTCCGCCATGCCTGCCTCCGGCCGACCTGTCAAGGTCATTCCATTGCAGCATCCTAGTACGTCCTCCTCCTCCTCGGCCGGTGGTTTCTACGCCGGAACACTGGTGAAGTCATGGACGACGAAGGTCAAGCGGATGACTTGGATTCACTGGATGGAGCTTCTGTTACCTTGCTCCCGTTGGATTAGAACGTATAAATGGCGGGAGTATTTACAGAGCGATCTCTTGTCCGGGATTACTATTGGCATCATGCTCGTTCCGCAGGCAATGTCTTATGCAAAACTAGCTGGGCTTCAACCGATATATGGACTTTATTCAGGTTTTCTCCCTTTGTTCGTCTATGCAATTTTTGGTTCTTCTCGTCAGCTTGCAGTTGGTCCAGTAGCATTAGTTTCTCTACTGGTTTCCAATGTCTTGGGTGGCATTGTCAATTCATCTGAGGAATTATATACTGAACTCGCCATATTATTGGCACTCATGGTTGGAATATTGGAATGCGTGATGGGTCTCTTGAGGCTTGGATGGCTTATTCGCTTTATCAGCCACTCTGTGATCTCTGGCTTTACTACAGCTTCTGCCTTTGTGATTGGACTATCCCAAGTGAAATATTTTCTAGGGTATGATGTATCAAGAAGTAGCAAAATCGTGCCTCTAATTGAGAGCATAATAGCTGGAGCAGACGGGTTCTTATGGGCACCTTTTATAATGGGATCAGTCATCCTTGCGGTACTTCAAATCATGAAGCATTTGGGAAAAACAAGGAAGCATTTACGGTTTCTCAGAGTTGCTGGTCCCCTTACAGCAGTTGTTATGGGCACAACTTTGACGAAAGTATTAAATCTACCTTCCATTTCTTTGGTTGGAGACATTCCCCAAGGCCTTCCAATGTTTTCAATTCCTAAAAGATTTGAGCATGTGAAGTCGTTGATTCCAACTGCCTTTCTGATCACTGGAGTGGCTATATTGGAATCTGTTGGGATTGCAAAAGCATTAGCAGCCAAGAATGGGTACGAGTTAGATTCAAATCAGGAGTTATTTGGCCTTGGAGTAGCCAATGTTGTTGGCTCATTTTTTTCTGCATATCCTACAACAGGTTCTTTCTCAAGATCAGCTGTGAACCATGAAAGTGGAGCAAAAACTAGCTTATCTCAGATTGTTACAGGAATCATTATGGGTGGTGCCCTTCTTTTCTTGACTCCGCTGTTTGAGCACATACCTCAGTGTGCCTTGGCTGCGATTGTCATCTCTGCTGTAATAACTTTGGTGGATTACGAGGAAGCTATCTTTTTGTGGCGTATAGATAAGAAAGATTTTCTTCTTTGGGTGATAACTGCCATTACTACGTTGTTCCTTGGTATTGAGATTGGTGTCTTAATTGGGGTGGGTGTTTCACTAGTCTTTGTCATTCACGAATCTGCAAATCCGCATATGGCTGTATTGGGGCGTCTTCCTGGCACCACCGTGTATAGAAATATTCAACAGTATCCTGAGGCATATACCTATAATGGGATTGTGATTGTTCGAATTGATGCACCAATTTATTTTGCAAACACAAGTTACATCAAAGACAGGTTACGTGATTATGAAGTTGAAGTGGATCAATCTACTGGTCGTGGACCAGACGTCGAAAGAGTCTATTTTGTGATTATAGAGATGGCACCTGTTACTTATATAGATTCAAGTGCTGTCCAAGCTCTAAAAGATTTGTATCAAGAGTACAAACTTCGTGATATTCAGATTGCCATTTCCAATCCGAATCGAGACGTTCTGCTTACATTTTCAAGATCTGGCGTCGTCGAGCTTATTGGCAAGGAGTGGTTTTTTGTGAGAGTTCATGATGCAGTTCAAGTTTGTCTTCAACATGTGGAGAGCTTAAATGAAACAACTAAAATATCAGATTCATCATCTAAAGATGGATCATCAAGCTTTCTCCAAAGTTTAATGAAGTCCAGAAGTGAGGATTTATCAGTGAGCCAATTAGAGTCGGGCTTCCAAAAACCTCCAAGTTCCAATGAAATCGACCCTCAATTGGAACCTTTACTGTCTCGAAAGCCTTGA 2115 42.6 MEITYSSPSATSLAFSNSALSAMPASGRPVKVIPLQHPSTSSSSSAGGFYAGTLVKSWTTKVKRMTWIHWMELLLPCSRWIRTYKWREYLQSDLLSGITIGIMLVPQAMSYAKLAGLQPIYGLYSGFLPLFVYAIFGSSRQLAVGPVALVSLLVSNVLGGIVNSSEELYTELAILLALMVGILECVMGLLRLGWLIRFISHSVISGFTTASAFVIGLSQVKYFLGYDVSRSSKIVPLIESIIAGADGFLWAPFIMGSVILAVLQIMKHLGKTRKHLRFLRVAGPLTAVVMGTTLTKVLNLPSISLVGDIPQGLPMFSIPKRFEHVKSLIPTAFLITGVAILESVGIAKALAAKNGYELDSNQELFGLGVANVVGSFFSAYPTTGSFSRSAVNHESGAKTSLSQIVTGIIMGGALLFLTPLFEHIPQCALAAIVISAVITLVDYEEAIFLWRIDKKDFLLWVITAITTLFLGIEIGVLIGVGVSLVFVIHESANPHMAVLGRLPGTTVYRNIQQYPEAYTYNGIVIVRIDAPIYFANTSYIKDRLRDYEVEVDQSTGRGPDVERVYFVIIEMAPVTYIDSSAVQALKDLYQEYKLRDIQIAISNPNRDVLLTFSRSGVVELIGKEWFFVRVHDAVQVCLQHVESLNETTKISDSSSKDGSSSFLQSLMKSRSEDLSVSQLESGFQKPPSSNEIDPQLEPLLSRKP 704
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 22545665 22554713 - Lsi02G016750.1 Lsi02g01675 656417
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi02g01675 704 MobiDBLite consensus disorder prediction 673 695 - -
Lsi02g01675 704 CDD STAS_SulP_like_sulfate_transporter 514 630 - -
Lsi02g01675 704 Pfam STAS domain 514 633 IPR002645 -
Lsi02g01675 704 Gene3D STAS domain 493 641 IPR036513 -
Lsi02g01675 704 PANTHER SULFATE TRANSPORTER 47 672 IPR001902 GO:0015301|GO:0016020|GO:0055085
Lsi02g01675 704 ProSiteProfiles STAS domain profile. 513 637 IPR002645 -
Lsi02g01675 704 PANTHER SULFATE TRANSPORTER 4.1-RELATED 47 672 - -
Lsi02g01675 704 MobiDBLite consensus disorder prediction 673 704 - -
Lsi02g01675 704 SUPERFAMILY SpoIIaa-like 515 637 IPR036513 -
Lsi02g01675 704 ProSitePatterns SLC26A transporters signature. 119 140 IPR018045 GO:0008271|GO:0008272
Lsi02g01675 704 Pfam Sulfate permease family 90 463 IPR011547 GO:0016021
Lsi02g01675 704 TIGRFAM sulP: sulfate permease 76 633 IPR001902 GO:0015301|GO:0016020|GO:0055085
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g01675 Lsi-Chr2:22545665 Lsi09g00959 Lsi-Chr9:12534076 6.69E-134 dispersed
Lsi02g01675 Lsi-Chr2:22545665 Lsi02g02261 Lsi-Chr2:29179045 6.15E-116 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi02g01675 K18059 - csv:101202870 1263.44