Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lsi02g01697 | ATGCAGTCGCCGCCGCCGCCACTGTCGTCGATGGTGGTTCTCAGCCCCTGCGCCGCCTGTAAGATCCTCCGCCGGAGATGCGTCGATAATTGTGTTTTAGCGCCTTATTTTCCTCCCACTGAGCCTCTCAAATTCGCCGCCGTGCATAAAATATTCGGAGCCGGCAACGTCATCAAGTTCCTGCAGGAATTACCAAAGAGTCAGAGAGCGGATGCTACGAGCAGTTTGGTATACGAAGCGAATGCTAGGATTCGAGACCCAGTCTATGGTTGCACTGGTTCAATTTTTCAACTTCAAAATCAAGTGAGCGAGCTCATGCACAATTAG | 327 | 51.38 | MQSPPPPLSSMVVLSPCAACKILRRRCVDNCVLAPYFPPTEPLKFAAVHKIFGAGNVIKFLQELPKSQRADATSSLVYEANARIRDPVYGCTGSIFQLQNQVSELMHN | 108 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
2 | 22736296 | 22737758 | - | Lsi02G016970.1 | Lsi02g01697 | 656439 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lsi02g01697 | 108 | Pfam | Lateral organ boundaries (LOB) domain | 16 | 106 | IPR004883 | - | |
Lsi02g01697 | 108 | PANTHER | LOB DOMAIN-CONTAINING PROTEIN 4-RELATED | 9 | 107 | - | - | |
Lsi02g01697 | 108 | ProSiteProfiles | LOB domain profile. | 15 | 108 | IPR004883 | - | |
Lsi02g01697 | 108 | PANTHER | DOMAIN PROTEIN 1, PUTATIVE, EXPRESSED-RELATED | 9 | 107 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lsi02g01697 | Lsi-Chr2:22736296 | Lsi02g01015 | Lsi-Chr2:10457656 | 7.46E-44 | dispersed | |
Lsi10g01295 | Lsi-Chr10:17172135 | Lsi02g01697 | Lsi-Chr2:22736296 | 1.58E-47 | wgd | |
Lsi02g01697 | Lsi-Chr2:22736296 | Lsi04g00812 | Lsi-Chr4:7712280 | 7.03E-53 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
24851 | PF03195 | LOB | 1.00E-39 | No_clan | Lsi | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lsi02g01697 | - | - | pda:103706653 | 172.17 |