Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi02g01697 ATGCAGTCGCCGCCGCCGCCACTGTCGTCGATGGTGGTTCTCAGCCCCTGCGCCGCCTGTAAGATCCTCCGCCGGAGATGCGTCGATAATTGTGTTTTAGCGCCTTATTTTCCTCCCACTGAGCCTCTCAAATTCGCCGCCGTGCATAAAATATTCGGAGCCGGCAACGTCATCAAGTTCCTGCAGGAATTACCAAAGAGTCAGAGAGCGGATGCTACGAGCAGTTTGGTATACGAAGCGAATGCTAGGATTCGAGACCCAGTCTATGGTTGCACTGGTTCAATTTTTCAACTTCAAAATCAAGTGAGCGAGCTCATGCACAATTAG 327 51.38 MQSPPPPLSSMVVLSPCAACKILRRRCVDNCVLAPYFPPTEPLKFAAVHKIFGAGNVIKFLQELPKSQRADATSSLVYEANARIRDPVYGCTGSIFQLQNQVSELMHN 108
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 22736296 22737758 - Lsi02G016970.1 Lsi02g01697 656439
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi02g01697 108 Pfam Lateral organ boundaries (LOB) domain 16 106 IPR004883 -
Lsi02g01697 108 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 9 107 - -
Lsi02g01697 108 ProSiteProfiles LOB domain profile. 15 108 IPR004883 -
Lsi02g01697 108 PANTHER DOMAIN PROTEIN 1, PUTATIVE, EXPRESSED-RELATED 9 107 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g01697 Lsi-Chr2:22736296 Lsi02g01015 Lsi-Chr2:10457656 7.46E-44 dispersed
Lsi10g01295 Lsi-Chr10:17172135 Lsi02g01697 Lsi-Chr2:22736296 1.58E-47 wgd
Lsi02g01697 Lsi-Chr2:22736296 Lsi04g00812 Lsi-Chr4:7712280 7.03E-53 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
24851 PF03195 LOB 1.00E-39 No_clan Lsi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi02g01697 - - pda:103706653 172.17