Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi02g01701 ATGGGTAAGGAGAAGGTTCACATCAACATTGTTGTCATTGGCCATGTCGACTCTGGCAAGTCGACCACCACTGGCCATTTGATCTACAAGCTTGGAGGCATTGACAAGCGTGTTATTGAGAGGTTTGAGAAGGAAGCTGCTGAGATGAACAAGAGATCGTTCAAGTATGCCTGGGTATTGGACAAGCTCAAGGCTGAACGTGAGCGTGGTATCACAATTGATATTGCTCTGTGGAAGTTCGAGACAACCAAGTACTACTGCACTGTTATTGATGCTCCTGGCCATCGTGATTTCATCAAGAACATGATTACTGGTACTTCCCAGGCTGACTGTGCTGTTCTTATCATTGATTCAACTACCGGAGGGTTTGAAGCTGGTATTTCTAAGGATGGGCAGACCCGTGAACATGCCCTTCTTGCCTTTACCCTTGGTGTCAGACAAATGATCTGCTGCTGCAACAAGGAAGTTTCATCCTACCTCAAGAAGGTTGGCTACAACCCAGACAAAATTCCCTTCGTCCCCATCTCTGGATTTGAGGGTGACAACATGATTGAAAGATCCACGAACCTCGACTGGTACAAGGGCCCGACCCTTCTCGAGGCTCTCGACCAAGTCCATGAGCCTAAGAGACCATCTGACAAACCCCTTCGTCTTCCACTTCAGGATGTTTACAAGATTGGAGGCATTGGAACTGTTCCAGTAGGTCGTGTCGAAACCGGTATTCTAAAACCCGGTATGGTCGTAACGTTTGCCCCCTCTGGACTTACTACTGAAGTAAAGTCTGTTGAAATGCACCATGAAGCTCTCCAAGAAGCTCTCCCTGGTGACAACGTGGGGTTCAACGTGAAGAATGTAGCCGTGAAAGATCTCAAGCGTGGCTTTGTTGCTTCAAATTCCAAGGATGATCCTGCCAAGGAAGCTGCCAATTTCACTTCCCAAGTTATCATCATGAACCATCCAGGACAGATTGGAAATGGTTATGCCCCTGTCCTCGACTGCCACACCTCTCACATTGCTGTCAAATTTGCCGAGATTTTAACCAAGATTGACAGACGATCTGGTAAAGAACTGGAGAAAGAACCCAAGTTCTTGAAAAATGGCGATGCTGGATTTGTTAAGATGATCCCCACCAAGCCTATGGTAGTGGAGACATTCTCTGAGTATCCTCCACTTGGGCGATTTGCAGTCAGGGACATGAGGCAAACTGTGGCTGTTGGTGTCATCAAAAGCGTTGAAAAGAAGGATCCAAGCGGTGCTAAGGTCACCAAATCAGCTGCTAAGAAATCTGTTTTCATTCCCCAACTCTCGCCGCAAGGGTTTAAGAGCACAGCTTTCTCGTCAGATCGTAACACGAAATACAGCCTGGTTTTAGATTTTGTGTTACTTCTGTGTTAA 1395 46.74 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVRQMICCCNKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIERSTNLDWYKGPTLLEALDQVHEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGILKPGMVVTFAPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAKEAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAEILTKIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKSVEKKDPSGAKVTKSAAKKSVFIPQLSPQGFKSTAFSSDRNTKYSLVLDFVLLLC 464
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 22777519 22782982 + Lsi02G017010.1 Lsi02g01701 656443
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi02g01701 464 CDD EF1_alpha_III 305 408 - -
Lsi02g01701 464 ProSitePatterns Translational (tr)-type guanine nucleotide-binding (G) domain signature. 61 76 IPR031157 -
Lsi02g01701 464 PANTHER ELONGATION FACTOR 1-ALPHA-LIKE 1 429 - -
Lsi02g01701 464 SUPERFAMILY EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 308 411 IPR009001 -
Lsi02g01701 464 PANTHER TRANSLATION FACTOR 1 429 - -
Lsi02g01701 464 Gene3D Translation factors 305 412 - -
Lsi02g01701 464 Pfam Elongation factor Tu C-terminal domain 304 411 IPR004160 -
Lsi02g01701 464 SUPERFAMILY Translation proteins 208 303 IPR009000 -
Lsi02g01701 464 Pfam Elongation factor Tu domain 2 230 295 IPR004161 GO:0005525
Lsi02g01701 464 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 5 212 IPR000795 GO:0003924|GO:0005525
Lsi02g01701 464 CDD EF1_alpha 9 209 - -
Lsi02g01701 464 Gene3D - 1 210 IPR027417 -
Lsi02g01701 464 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 3 231 IPR027417 -
Lsi02g01701 464 Gene3D Translation factors 211 298 - -
Lsi02g01701 464 TIGRFAM EF-1_alpha: translation elongation factor EF-1, subunit alpha 1 415 IPR004539 GO:0003746|GO:0005525|GO:0006414
Lsi02g01701 464 PRINTS GTP-binding elongation factor signature 88 98 IPR000795 GO:0003924|GO:0005525
Lsi02g01701 464 PRINTS GTP-binding elongation factor signature 104 115 IPR000795 GO:0003924|GO:0005525
Lsi02g01701 464 PRINTS GTP-binding elongation factor signature 9 22 IPR000795 GO:0003924|GO:0005525
Lsi02g01701 464 PRINTS GTP-binding elongation factor signature 68 76 IPR000795 GO:0003924|GO:0005525
Lsi02g01701 464 CDD EF1_alpha_II 212 302 - -
Lsi02g01701 464 Pfam Elongation factor Tu GTP binding domain 6 154 IPR000795 GO:0003924|GO:0005525
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g01701 Lsi-Chr2:22777519 Lsi02g01704 Lsi-Chr2:22788097 0 dispersed
Lsi02g01701 Lsi-Chr2:22777519 Lsi02g01702 Lsi-Chr2:22783343 0 tandem
Lsi06g01592 Lsi-Chr6:26309646 Lsi02g01701 Lsi-Chr2:22777519 7.14E-46 transposed
Lsi10g01288 Lsi-Chr10:17113450 Lsi02g01701 Lsi-Chr2:22777519 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi02g01701 K03231 - csv:105434427 835.869