Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lsi02g01701 | ATGGGTAAGGAGAAGGTTCACATCAACATTGTTGTCATTGGCCATGTCGACTCTGGCAAGTCGACCACCACTGGCCATTTGATCTACAAGCTTGGAGGCATTGACAAGCGTGTTATTGAGAGGTTTGAGAAGGAAGCTGCTGAGATGAACAAGAGATCGTTCAAGTATGCCTGGGTATTGGACAAGCTCAAGGCTGAACGTGAGCGTGGTATCACAATTGATATTGCTCTGTGGAAGTTCGAGACAACCAAGTACTACTGCACTGTTATTGATGCTCCTGGCCATCGTGATTTCATCAAGAACATGATTACTGGTACTTCCCAGGCTGACTGTGCTGTTCTTATCATTGATTCAACTACCGGAGGGTTTGAAGCTGGTATTTCTAAGGATGGGCAGACCCGTGAACATGCCCTTCTTGCCTTTACCCTTGGTGTCAGACAAATGATCTGCTGCTGCAACAAGGAAGTTTCATCCTACCTCAAGAAGGTTGGCTACAACCCAGACAAAATTCCCTTCGTCCCCATCTCTGGATTTGAGGGTGACAACATGATTGAAAGATCCACGAACCTCGACTGGTACAAGGGCCCGACCCTTCTCGAGGCTCTCGACCAAGTCCATGAGCCTAAGAGACCATCTGACAAACCCCTTCGTCTTCCACTTCAGGATGTTTACAAGATTGGAGGCATTGGAACTGTTCCAGTAGGTCGTGTCGAAACCGGTATTCTAAAACCCGGTATGGTCGTAACGTTTGCCCCCTCTGGACTTACTACTGAAGTAAAGTCTGTTGAAATGCACCATGAAGCTCTCCAAGAAGCTCTCCCTGGTGACAACGTGGGGTTCAACGTGAAGAATGTAGCCGTGAAAGATCTCAAGCGTGGCTTTGTTGCTTCAAATTCCAAGGATGATCCTGCCAAGGAAGCTGCCAATTTCACTTCCCAAGTTATCATCATGAACCATCCAGGACAGATTGGAAATGGTTATGCCCCTGTCCTCGACTGCCACACCTCTCACATTGCTGTCAAATTTGCCGAGATTTTAACCAAGATTGACAGACGATCTGGTAAAGAACTGGAGAAAGAACCCAAGTTCTTGAAAAATGGCGATGCTGGATTTGTTAAGATGATCCCCACCAAGCCTATGGTAGTGGAGACATTCTCTGAGTATCCTCCACTTGGGCGATTTGCAGTCAGGGACATGAGGCAAACTGTGGCTGTTGGTGTCATCAAAAGCGTTGAAAAGAAGGATCCAAGCGGTGCTAAGGTCACCAAATCAGCTGCTAAGAAATCTGTTTTCATTCCCCAACTCTCGCCGCAAGGGTTTAAGAGCACAGCTTTCTCGTCAGATCGTAACACGAAATACAGCCTGGTTTTAGATTTTGTGTTACTTCTGTGTTAA | 1395 | 46.74 | MGKEKVHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVRQMICCCNKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIERSTNLDWYKGPTLLEALDQVHEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGILKPGMVVTFAPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAKEAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAEILTKIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKSVEKKDPSGAKVTKSAAKKSVFIPQLSPQGFKSTAFSSDRNTKYSLVLDFVLLLC | 464 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
2 | 22777519 | 22782982 | + | Lsi02G017010.1 | Lsi02g01701 | 656443 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lsi02g01701 | 464 | CDD | EF1_alpha_III | 305 | 408 | - | - | |
Lsi02g01701 | 464 | ProSitePatterns | Translational (tr)-type guanine nucleotide-binding (G) domain signature. | 61 | 76 | IPR031157 | - | |
Lsi02g01701 | 464 | PANTHER | ELONGATION FACTOR 1-ALPHA-LIKE | 1 | 429 | - | - | |
Lsi02g01701 | 464 | SUPERFAMILY | EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain | 308 | 411 | IPR009001 | - | |
Lsi02g01701 | 464 | PANTHER | TRANSLATION FACTOR | 1 | 429 | - | - | |
Lsi02g01701 | 464 | Gene3D | Translation factors | 305 | 412 | - | - | |
Lsi02g01701 | 464 | Pfam | Elongation factor Tu C-terminal domain | 304 | 411 | IPR004160 | - | |
Lsi02g01701 | 464 | SUPERFAMILY | Translation proteins | 208 | 303 | IPR009000 | - | |
Lsi02g01701 | 464 | Pfam | Elongation factor Tu domain 2 | 230 | 295 | IPR004161 | GO:0005525 | |
Lsi02g01701 | 464 | ProSiteProfiles | Translational (tr)-type guanine nucleotide-binding (G) domain profile. | 5 | 212 | IPR000795 | GO:0003924|GO:0005525 | |
Lsi02g01701 | 464 | CDD | EF1_alpha | 9 | 209 | - | - | |
Lsi02g01701 | 464 | Gene3D | - | 1 | 210 | IPR027417 | - | |
Lsi02g01701 | 464 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 3 | 231 | IPR027417 | - | |
Lsi02g01701 | 464 | Gene3D | Translation factors | 211 | 298 | - | - | |
Lsi02g01701 | 464 | TIGRFAM | EF-1_alpha: translation elongation factor EF-1, subunit alpha | 1 | 415 | IPR004539 | GO:0003746|GO:0005525|GO:0006414 | |
Lsi02g01701 | 464 | PRINTS | GTP-binding elongation factor signature | 88 | 98 | IPR000795 | GO:0003924|GO:0005525 | |
Lsi02g01701 | 464 | PRINTS | GTP-binding elongation factor signature | 104 | 115 | IPR000795 | GO:0003924|GO:0005525 | |
Lsi02g01701 | 464 | PRINTS | GTP-binding elongation factor signature | 9 | 22 | IPR000795 | GO:0003924|GO:0005525 | |
Lsi02g01701 | 464 | PRINTS | GTP-binding elongation factor signature | 68 | 76 | IPR000795 | GO:0003924|GO:0005525 | |
Lsi02g01701 | 464 | CDD | EF1_alpha_II | 212 | 302 | - | - | |
Lsi02g01701 | 464 | Pfam | Elongation factor Tu GTP binding domain | 6 | 154 | IPR000795 | GO:0003924|GO:0005525 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lsi02g01701 | Lsi-Chr2:22777519 | Lsi02g01704 | Lsi-Chr2:22788097 | 0 | dispersed | |
Lsi02g01701 | Lsi-Chr2:22777519 | Lsi02g01702 | Lsi-Chr2:22783343 | 0 | tandem | |
Lsi06g01592 | Lsi-Chr6:26309646 | Lsi02g01701 | Lsi-Chr2:22777519 | 7.14E-46 | transposed | |
Lsi10g01288 | Lsi-Chr10:17113450 | Lsi02g01701 | Lsi-Chr2:22777519 | 0 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lsi02g01701 | K03231 | - | csv:105434427 | 835.869 |