Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lsi02g01702 | ATGAATTCAAGCATGGGTAAGGAAAAAATTCACATTAACATTGTGGTCATTGGTCACGTCGACTCCGGCAAGTCGACCACTACTGGCCATTTGATTTACAAGCTTGGAGGCATTGACAAGCGTGTTATCGAGAGGTTTGAGAAGGAAGCTGCTGAGATGAACAAGAGATCATTCAAGTATGCCTGGGTGTTGGACAAGCTTAAGGCTGAACGTGAGCGTGGTATCACAATTGACATTGCCCTGTGGAAGTTCGAGACCACCAAGTATTACTGCACTGTTATTGATGCTCCTGGTCATCGTGATTTCATCAAGAACATGATTACCGGTACTTCCCAGGCTGACTGTGCTGTGCTTATCATTGACTCCACTACCGGAGGTTTTGAAGCCGGTATTTCTAAGGATGGGCAAACCCGTGAACACGCCCTTCTTGCCTTTACCCTTGGTGTCAAGCAAATGATTTGCTGCTGCAACAAGATGGATGCCACCACTCCTAAGTACTCCAAAGCTAGGTACGATGAAATTGTGAAGGAAGTTTCTTCCTACCTCAAGAAGGTTGGCTACAATCCAGACAAAATTCCCTTCGTCCCCATCTCTGGATTTGAGGGTGACAACATGATTGAAAGATCCACAAACCTCGACTGGTACAAGGGACCAACCCTTCTTGAGGCCCTCGACCTGATCCAAGAGCCTAAGAGACCATCAGACAAACCCCTTCGTCTTCCACTTCAGGATGTCTACAAGATTGGAGGTATTGGAACTGTTCCAGTGGGTCGTGTTGAGACGGGTATTATAAAACCCGGTATGGTGGTCACCTTTGCTCCATCTGGACTGACTACTGAAGTTAAGTCTGTGGAGATGCACCATGAAGCTCTCCAAGAAGCTCTCCCTGGTGACAACGTGGGGTTCAACGTGAAGAATGTCGCTGTGAAGGATCTCAAGCGTGGCTATGTAGCCTCAAATTCCAAGGATGATCCTGCCAAGGAAGCTGCCAATTTCACTTCCCAAGTTATCATCATGAACCATCCAGGACAGATTGGAAATGGTTATGCCCCTGTCCTTGACTGCCACACCTCTCACATTGCTGTCAAATTTGCCGAGATTTTAACCAAGATTGACAGGCGATCTGGTAAAGAACTCGAGAAAGAGCCGAAGTTCTTGAAAAACGGAGATGCTGGATTTGTTAAGATGATCCCCACCAAACCCATGGTGGTGGAAACTTTCTCTGAGTATCCTCCACTTGGACGATTCGCCGTGAGGGACATGCGTCAAACTGTGGCTGTTGGTGTCATCAAGGCCGTTGAGAAGAAGGATCCATCGGGTGCCAAGGTCACAAAATCTGCAGCTAAGAAATCAGGCAAGTGA | 1362 | 47.28 | MNSSMGKEKIHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIERSTNLDWYKGPTLLEALDLIQEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGIIKPGMVVTFAPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGYVASNSKDDPAKEAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAEILTKIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKAVEKKDPSGAKVTKSAAKKSGK | 453 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
2 | 22783343 | 22785456 | + | Lsi02G017020.1 | Lsi02g01702 | 656444 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lsi02g01702 | 453 | Gene3D | - | 1 | 232 | IPR027417 | - | |
Lsi02g01702 | 453 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 7 | 253 | IPR027417 | - | |
Lsi02g01702 | 453 | Pfam | Elongation factor Tu domain 2 | 252 | 317 | IPR004161 | GO:0005525 | |
Lsi02g01702 | 453 | SUPERFAMILY | EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain | 330 | 433 | IPR009001 | - | |
Lsi02g01702 | 453 | Pfam | Elongation factor Tu GTP binding domain | 11 | 225 | IPR000795 | GO:0003924|GO:0005525 | |
Lsi02g01702 | 453 | TIGRFAM | EF-1_alpha: translation elongation factor EF-1, subunit alpha | 5 | 437 | IPR004539 | GO:0003746|GO:0005525|GO:0006414 | |
Lsi02g01702 | 453 | CDD | EF1_alpha_II | 234 | 324 | - | - | |
Lsi02g01702 | 453 | ProSitePatterns | Translational (tr)-type guanine nucleotide-binding (G) domain signature. | 65 | 80 | IPR031157 | - | |
Lsi02g01702 | 453 | Gene3D | Translation factors | 233 | 320 | - | - | |
Lsi02g01702 | 453 | ProSiteProfiles | Translational (tr)-type guanine nucleotide-binding (G) domain profile. | 9 | 234 | IPR000795 | GO:0003924|GO:0005525 | |
Lsi02g01702 | 453 | PANTHER | ELONGATION FACTOR 1-ALPHA-LIKE | 5 | 451 | - | - | |
Lsi02g01702 | 453 | Hamap | Elongation factor Tu [tuf]. | 6 | 436 | IPR004539 | GO:0003746|GO:0005525|GO:0006414 | |
Lsi02g01702 | 453 | Gene3D | Translation factors | 327 | 434 | - | - | |
Lsi02g01702 | 453 | SUPERFAMILY | Translation proteins | 235 | 325 | IPR009000 | - | |
Lsi02g01702 | 453 | CDD | EF1_alpha_III | 327 | 430 | - | - | |
Lsi02g01702 | 453 | Pfam | Elongation factor Tu C-terminal domain | 326 | 433 | IPR004160 | - | |
Lsi02g01702 | 453 | CDD | EF1_alpha | 13 | 231 | - | - | |
Lsi02g01702 | 453 | PRINTS | GTP-binding elongation factor signature | 13 | 26 | IPR000795 | GO:0003924|GO:0005525 | |
Lsi02g01702 | 453 | PRINTS | GTP-binding elongation factor signature | 92 | 102 | IPR000795 | GO:0003924|GO:0005525 | |
Lsi02g01702 | 453 | PRINTS | GTP-binding elongation factor signature | 108 | 119 | IPR000795 | GO:0003924|GO:0005525 | |
Lsi02g01702 | 453 | PRINTS | GTP-binding elongation factor signature | 152 | 161 | IPR000795 | GO:0003924|GO:0005525 | |
Lsi02g01702 | 453 | PRINTS | GTP-binding elongation factor signature | 72 | 80 | IPR000795 | GO:0003924|GO:0005525 | |
Lsi02g01702 | 453 | PANTHER | TRANSLATION FACTOR | 5 | 451 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lsi02g00219 | Lsi-Chr2:1799171 | Lsi02g01702 | Lsi-Chr2:22783343 | 6.49E-89 | dispersed | |
Lsi02g01702 | Lsi-Chr2:22783343 | Lsi10g01288 | Lsi-Chr10:17113450 | 0 | dispersed | |
Lsi02g01702 | Lsi-Chr2:22783343 | Lsi02g01704 | Lsi-Chr2:22788097 | 0 | proximal | |
Lsi02g01701 | Lsi-Chr2:22777519 | Lsi02g01702 | Lsi-Chr2:22783343 | 0 | tandem |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lsi02g01702 | K03231 | - | csv:101220517 | 895.575 |