Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi02g01702 ATGAATTCAAGCATGGGTAAGGAAAAAATTCACATTAACATTGTGGTCATTGGTCACGTCGACTCCGGCAAGTCGACCACTACTGGCCATTTGATTTACAAGCTTGGAGGCATTGACAAGCGTGTTATCGAGAGGTTTGAGAAGGAAGCTGCTGAGATGAACAAGAGATCATTCAAGTATGCCTGGGTGTTGGACAAGCTTAAGGCTGAACGTGAGCGTGGTATCACAATTGACATTGCCCTGTGGAAGTTCGAGACCACCAAGTATTACTGCACTGTTATTGATGCTCCTGGTCATCGTGATTTCATCAAGAACATGATTACCGGTACTTCCCAGGCTGACTGTGCTGTGCTTATCATTGACTCCACTACCGGAGGTTTTGAAGCCGGTATTTCTAAGGATGGGCAAACCCGTGAACACGCCCTTCTTGCCTTTACCCTTGGTGTCAAGCAAATGATTTGCTGCTGCAACAAGATGGATGCCACCACTCCTAAGTACTCCAAAGCTAGGTACGATGAAATTGTGAAGGAAGTTTCTTCCTACCTCAAGAAGGTTGGCTACAATCCAGACAAAATTCCCTTCGTCCCCATCTCTGGATTTGAGGGTGACAACATGATTGAAAGATCCACAAACCTCGACTGGTACAAGGGACCAACCCTTCTTGAGGCCCTCGACCTGATCCAAGAGCCTAAGAGACCATCAGACAAACCCCTTCGTCTTCCACTTCAGGATGTCTACAAGATTGGAGGTATTGGAACTGTTCCAGTGGGTCGTGTTGAGACGGGTATTATAAAACCCGGTATGGTGGTCACCTTTGCTCCATCTGGACTGACTACTGAAGTTAAGTCTGTGGAGATGCACCATGAAGCTCTCCAAGAAGCTCTCCCTGGTGACAACGTGGGGTTCAACGTGAAGAATGTCGCTGTGAAGGATCTCAAGCGTGGCTATGTAGCCTCAAATTCCAAGGATGATCCTGCCAAGGAAGCTGCCAATTTCACTTCCCAAGTTATCATCATGAACCATCCAGGACAGATTGGAAATGGTTATGCCCCTGTCCTTGACTGCCACACCTCTCACATTGCTGTCAAATTTGCCGAGATTTTAACCAAGATTGACAGGCGATCTGGTAAAGAACTCGAGAAAGAGCCGAAGTTCTTGAAAAACGGAGATGCTGGATTTGTTAAGATGATCCCCACCAAACCCATGGTGGTGGAAACTTTCTCTGAGTATCCTCCACTTGGACGATTCGCCGTGAGGGACATGCGTCAAACTGTGGCTGTTGGTGTCATCAAGGCCGTTGAGAAGAAGGATCCATCGGGTGCCAAGGTCACAAAATCTGCAGCTAAGAAATCAGGCAAGTGA 1362 47.28 MNSSMGKEKIHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIERSTNLDWYKGPTLLEALDLIQEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGIIKPGMVVTFAPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGYVASNSKDDPAKEAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAEILTKIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKAVEKKDPSGAKVTKSAAKKSGK 453
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 22783343 22785456 + Lsi02G017020.1 Lsi02g01702 656444
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi02g01702 453 Gene3D - 1 232 IPR027417 -
Lsi02g01702 453 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 7 253 IPR027417 -
Lsi02g01702 453 Pfam Elongation factor Tu domain 2 252 317 IPR004161 GO:0005525
Lsi02g01702 453 SUPERFAMILY EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 330 433 IPR009001 -
Lsi02g01702 453 Pfam Elongation factor Tu GTP binding domain 11 225 IPR000795 GO:0003924|GO:0005525
Lsi02g01702 453 TIGRFAM EF-1_alpha: translation elongation factor EF-1, subunit alpha 5 437 IPR004539 GO:0003746|GO:0005525|GO:0006414
Lsi02g01702 453 CDD EF1_alpha_II 234 324 - -
Lsi02g01702 453 ProSitePatterns Translational (tr)-type guanine nucleotide-binding (G) domain signature. 65 80 IPR031157 -
Lsi02g01702 453 Gene3D Translation factors 233 320 - -
Lsi02g01702 453 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 9 234 IPR000795 GO:0003924|GO:0005525
Lsi02g01702 453 PANTHER ELONGATION FACTOR 1-ALPHA-LIKE 5 451 - -
Lsi02g01702 453 Hamap Elongation factor Tu [tuf]. 6 436 IPR004539 GO:0003746|GO:0005525|GO:0006414
Lsi02g01702 453 Gene3D Translation factors 327 434 - -
Lsi02g01702 453 SUPERFAMILY Translation proteins 235 325 IPR009000 -
Lsi02g01702 453 CDD EF1_alpha_III 327 430 - -
Lsi02g01702 453 Pfam Elongation factor Tu C-terminal domain 326 433 IPR004160 -
Lsi02g01702 453 CDD EF1_alpha 13 231 - -
Lsi02g01702 453 PRINTS GTP-binding elongation factor signature 13 26 IPR000795 GO:0003924|GO:0005525
Lsi02g01702 453 PRINTS GTP-binding elongation factor signature 92 102 IPR000795 GO:0003924|GO:0005525
Lsi02g01702 453 PRINTS GTP-binding elongation factor signature 108 119 IPR000795 GO:0003924|GO:0005525
Lsi02g01702 453 PRINTS GTP-binding elongation factor signature 152 161 IPR000795 GO:0003924|GO:0005525
Lsi02g01702 453 PRINTS GTP-binding elongation factor signature 72 80 IPR000795 GO:0003924|GO:0005525
Lsi02g01702 453 PANTHER TRANSLATION FACTOR 5 451 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g00219 Lsi-Chr2:1799171 Lsi02g01702 Lsi-Chr2:22783343 6.49E-89 dispersed
Lsi02g01702 Lsi-Chr2:22783343 Lsi10g01288 Lsi-Chr10:17113450 0 dispersed
Lsi02g01702 Lsi-Chr2:22783343 Lsi02g01704 Lsi-Chr2:22788097 0 proximal
Lsi02g01701 Lsi-Chr2:22777519 Lsi02g01702 Lsi-Chr2:22783343 0 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi02g01702 K03231 - csv:101220517 895.575