Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lsi02g01714 | AGGATGACCAATCAGTTGAGGAGTAGTGTAAACCGAAGGCGAGACTTCAGAGACAATAACTATAAGCGGAAGAAGCAAAGCATAATCCAGTCTGCTGAGGAGGATATTGAATCAAAGTTTGGATTCAATCTCTTCTCTGAAGGCGATAAGAGGCTTGGATGGTTGCTCACCTTCACTTCTTCATCTTGTAAGGATGAGGATACCGAAAAAGTCTACAGTTGTATCGATCTTTATTTTGTCACACAGGATGGCAGCAGTTTCAAATCAAAATATAAGTTTCGTCCTTATTTTTATGCAGCCACAAAGAATAAAATGGAAAATGATGTGGAGGCTTATTTGAGACGACGTTATAAAGGTCAAATAGCTGATATTGAGATTTTAGAAAAAGAAGACCTTGATCTTAAGAATCATTTGTCGGGATTGCACAAGGCATATTTAAAGCTATCATTTGACACTGTTCAAGAATTGATGAATGTAAAGAGTGAATTATTGCATGTTGTTGAAAGCAATAGGGAGAAGTCTGATGCTGCAGAAGCATATGATTCTATTTTATTTGGGAAAAGAGAACAGAGGCTTCAAGATTTTCTAGAATGTATTGTTGATCTTCGAGAGTACGATGTTCCTTACCACGTTCGCTTTGCTATTGATCACGATTTGCGCTGTGGACAGTGGTATGATGTCAGTGTATCAAGCACTGGTATTACTCTTGAGAAGAGAAAAGATCTTCTGCAACGTGCTGAAGTTCGGATATGTGCATTTGATATTGAGACCACAAAACTACCATTGAAATTTCCAGATGCTGAATATGACATGATAATGATGATTTCCTATATGGTTGATGGACAAGGGTACTTGATTATCAACAGAGAGTGTGTTGGAGAAGATATTGAGAATTTGGAATACACTCCAAAACCAGAATATCAAGGGTTCTTCAAAGTGAACAATGTGAAAAATGAGTTAGAGCTTCTCAAACTGTGGTTTGCCCATATGCGAGAGGTGAAACCTGGTATCTACGTCACCTATAATGGCGACTATTTTGACTGGCCATTTCTTGAAAGCAGAGCAGCATATCATGGGCTTAAAATGAGTGATGAAGTAGGATTTCAATGCGACAAGAATCAGGGAGAATGTCGTTCAAAATTTGCTTGTCATTTGGATTGCTTTGCCTGGGTAAAGCGTGATAGTTATCTTCCTCAGGGTAGCCATGGTTTGAAGCTTCCTTCTTTCTTCCTGGTTTTCTGTGGGTTCTGTTTGAATTGTCGAGGAGTCAATAAAATGAAAAGTGAGATTGTAAATAATGAAGTTATGCAATATTTATTCAATATCGTCATAGCCCCCTTGTCAGCACCCGTTTCCATCTCTCTCTCTCTTGAGAGAGTGAGAGCAGAAGGAAATGCAGATGCTGATATTTATTGTTTTAATCTTATGGCTGTCACAAAAGCGAAATTGGGGTACGATCCTCTTGAAGTGAATCCAGAAGATATGGTGCGGTTTGCAAAGGAAAAGCCTCAGATGATGGCTTCCTATTCCGTATCAGATGCTGTTGCTACATACTACTTGTACATGACCTATGTTCATCCTTTCATTTTTTCTCTAGCAACTATCATTCCAATGTCACCCGATGAGGTGTTGCGCAAGGGAAGTGGGACGCTTTGTGAAATGCTTTTAATGGTTCAGGCTTACGAGGCTAATGTCGTGTGTCCTAACAAACATCAATCAGATCCAGAAAAGTTCCATAACAATCGGCTTCTTGAAAGTGAGACATACATAGGTGGTCATGTAGAATGTCTAGAGAGTGGTGTATTTAGATCTGACCTTCCTACCAGTTTTAGACTTGATTCATCTGCTTATGATCAATTGATAAACAATCTAGATCGAGATTTGCAGTATGCCATTCAAGTAGAAGGAAAGATGGACTTGGAATTGGTGTCAAACTATAGTGATGTGAAGACTGCTATTACAGAAAAGGTGGCTAGAATTTCCTTATTCGATTGCGGGGATGAGCCTATGCGTGAAGAGTGCCCTCTGATCTATCACCTCGATGTAGCTGCAATGTATCCCAACATCATTTTAACAAATAGGCTTCAGGTGCAACAAACTTTCTTTTCCCTTTTAGTTGAAGAATATTTGATTGGTCTATGTTTTGAACCAAGGTTGTTTACTGTAAGCCATTGGCGATCTTTCGCTGGAAGATTTCACTTCTTGACTACCCTTCGTCATGTTACAACTTACAAGTCTATTGAGGTTACACTTGGGCAGTTTAAGCCCTCAGTGAAATTACTTCTTCCTAAAATAATTCTTTTCCTCAATGTTCTAAGCATTAGCTACATGTTTTTCATGGCATCAACAACTTATTCTTGTTTAATTCCAGCCGCCGTCATAACAGATGAGGTTTGTACTGCTTGTGATTTCAACCGTCCTGGAAAAACTTGTCTACGAGAACTTGAATGGGTATGGCACGGAGAGGTATTCGAGGCTAAAAGAAGGTCAACTCTCTCTCTTTCCCTACTTGTATTTTTTCATCTGTTCGACTATTATCATCTGAAGAGGCAAATTGAGTCTGAGTTTGTTGATAGTGGTACCGTTCGATTGTCAAAACAATTTCTTGAACTTCCAAAGTTGGAGCAACAAGCAAAACTCAAAGAGCGTTTAAAGAAATACTGTCAGAAGGCTTACAAACGGGTACTTGATAAGCCAGTCACTGAAGTTCGAAAAGCAGGGATCTGCATGAGGGAAAACTCCTTTTATATCGACACTGTTCGGCTCAATAAAGTTTGGAAGGGGAAACTATCAGAAGCTAAAGCAAGTGGAAATTCAATCAAGATCCAGGAAGCCCAAGACATGGTGGTTCTGTATGATTCTTTACAACTTGCTCATAAATGTATCCTCAACTCCTTTTATGGATATGTGATGCGAAAGGGTGCTCGTTGGTATTCGATGGAAATGGCTGGGGTTGTTACATATACTGGAGCAAAAATCATTCAGAATGCTCGTCTGCTGATTGAGAAAATTGGAAAACCACTAGAGTTAGACACTGATGGTATCTGGTGTGCACTACCTGGATCATTCCCAGAGAACTTTACCTTTAAGACAAAAGAATCAAAGAAGTTGACAATTTCATATCCATGTGTTATGCTTAATGTTGATGTGGCAAGGAACAACACAAATGATCAGTACCAAACACTTGTAGATCCTGTGAGGAAAATATATGAAATGCGTAGTGAATGCTCAATTGAATTTGAAGTCGACGGACCGTACAAGGCAATGATCCTTCCTGCCTCCAAGGAAGAAGGCATTTTGATCAAGAAGAGATATGCTGTCTTCAATGATGATGGAACCCTTGCAGAGCTAAAAGGCTTTGAGATTAAGCGTAGGGGGGAGTTAAAGCTCATCAAAGTTTTCCAGATTTATTTGTATCCTTACTCAAGTGGCATGGCCAAGTCTTATAATATAGATGCACATGCTGACATGCACCCGAAGCTGTTGTTTGGGGGACTTGTAAATGTTAAAATTATTATGAATTTGAAATTACCATTCTCAAGCATACGATTTTGGAAGGAAGAACTTAGAAATAGGTCATCCTCGAAAGCTGAACTTTTTGACAAGTTCCTTCATGGTTCCACGTTAGAGGAATGCTATTCAGTTGTTGCATCTGTTGCAAATCGCTGGCTCGATCTTCTAGATAGTCAAGGGAAAGATATTGCAGATAGTGAGTTGCTTGATTATATATCTGAATCCAGTACCATGAGCAAGTCTTTGGCAGACTATGGAGAGCAAAAGTCTTGTGCTGTTACCACTGCAAAACGTCTTGCTGATTTTCTTGGTGATACAATGGTCAGGGATAAAGGCCTACGTTGTCAATATATAGTTGCATGTGAACCCAAGGGAACACCGGTAAGTGAGCGTGCTGTTCCTGTTGCTATATTTGAGACTGATCCAGAGATAATGAAATTTTATGTACGCAAATGGTGCAAAATTTCATCAGAAGTTGGCATTCGATCCATCATCGACTGGTCCTACTACAAACAACGCCTAAGTTCAGCCATTCAAAAAATTATAACAATTCCAGCTGCCATGCAAAAGGTTTCAAATCCTGTCCCTAGGGTGGTCCATCCTGATTGGTTACATAAGAAAGTTCGTGAGAAGGATGATAAATTTCGGCAACAGAAAATAGTCAATATGTTTGCATCAAGCCGAGGTAAATATTTAGAAAACAATGATGGTGCTAGCAGCAGCAAAAATGTGATGAACGGCAAAAATTCTGATGATATAGAGGACTTTCAAAAGAAAACTAGTTCTTCAAGTGGCCCCAAACCAGTTGTTCGAAGTTACGACGTTAGAGCCATGAAACATTCAGTTACAAGAGATAGCCAAGTAGATTCCATGATGCAAGAAAAGTTTAAGGGTGCAGAATCAGGAAGCGATCCTTCTTCACCATTGCATTTCAAAGATATCGATAGAAATGAGGATTACCATGGATGGCTTGAAATGAAGAAATGA | 4500 | 39.36 | RMTNQLRSSVNRRRDFRDNNYKRKKQSIIQSAEEDIESKFGFNLFSEGDKRLGWLLTFTSSSCKDEDTEKVYSCIDLYFVTQDGSSFKSKYKFRPYFYAATKNKMENDVEAYLRRRYKGQIADIEILEKEDLDLKNHLSGLHKAYLKLSFDTVQELMNVKSELLHVVESNREKSDAAEAYDSILFGKREQRLQDFLECIVDLREYDVPYHVRFAIDHDLRCGQWYDVSVSSTGITLEKRKDLLQRAEVRICAFDIETTKLPLKFPDAEYDMIMMISYMVDGQGYLIINRECVGEDIENLEYTPKPEYQGFFKVNNVKNELELLKLWFAHMREVKPGIYVTYNGDYFDWPFLESRAAYHGLKMSDEVGFQCDKNQGECRSKFACHLDCFAWVKRDSYLPQGSHGLKLPSFFLVFCGFCLNCRGVNKMKSEIVNNEVMQYLFNIVIAPLSAPVSISLSLERVRAEGNADADIYCFNLMAVTKAKLGYDPLEVNPEDMVRFAKEKPQMMASYSVSDAVATYYLYMTYVHPFIFSLATIIPMSPDEVLRKGSGTLCEMLLMVQAYEANVVCPNKHQSDPEKFHNNRLLESETYIGGHVECLESGVFRSDLPTSFRLDSSAYDQLINNLDRDLQYAIQVEGKMDLELVSNYSDVKTAITEKVARISLFDCGDEPMREECPLIYHLDVAAMYPNIILTNRLQVQQTFFSLLVEEYLIGLCFEPRLFTVSHWRSFAGRFHFLTTLRHVTTYKSIEVTLGQFKPSVKLLLPKIILFLNVLSISYMFFMASTTYSCLIPAAVITDEVCTACDFNRPGKTCLRELEWVWHGEVFEAKRRSTLSLSLLVFFHLFDYYHLKRQIESEFVDSGTVRLSKQFLELPKLEQQAKLKERLKKYCQKAYKRVLDKPVTEVRKAGICMRENSFYIDTVRLNKVWKGKLSEAKASGNSIKIQEAQDMVVLYDSLQLAHKCILNSFYGYVMRKGARWYSMEMAGVVTYTGAKIIQNARLLIEKIGKPLELDTDGIWCALPGSFPENFTFKTKESKKLTISYPCVMLNVDVARNNTNDQYQTLVDPVRKIYEMRSECSIEFEVDGPYKAMILPASKEEGILIKKRYAVFNDDGTLAELKGFEIKRRGELKLIKVFQIYLYPYSSGMAKSYNIDAHADMHPKLLFGGLVNVKIIMNLKLPFSSIRFWKEELRNRSSSKAELFDKFLHGSTLEECYSVVASVANRWLDLLDSQGKDIADSELLDYISESSTMSKSLADYGEQKSCAVTTAKRLADFLGDTMVRDKGLRCQYIVACEPKGTPVSERAVPVAIFETDPEIMKFYVRKWCKISSEVGIRSIIDWSYYKQRLSSAIQKIITIPAAMQKVSNPVPRVVHPDWLHKKVREKDDKFRQQKIVNMFASSRGKYLENNDGASSSKNVMNGKNSDDIEDFQKKTSSSSGPKPVVRSYDVRAMKHSVTRDSQVDSMMQEKFKGAESGSDPSSPLHFKDIDRNEDYHGWLEMKK | 1499 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
2 | 22855717 | 22867392 | - | Lsi02G017140.1 | Lsi02g01714 | 656456 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lsi02g01714 | 1499 | Gene3D | Palm domain of DNA polymerase | 861 | 1115 | IPR023211 | - | |
Lsi02g01714 | 1499 | Pfam | DNA polymerase family B, exonuclease domain | 81 | 405 | IPR006133 | - | |
Lsi02g01714 | 1499 | CDD | DNA_polB_epsilon_exo | 247 | 522 | - | - | |
Lsi02g01714 | 1499 | Gene3D | - | 470 | 587 | IPR036397 | GO:0003676 | |
Lsi02g01714 | 1499 | CDD | POLBc_epsilon | 581 | 1361 | - | - | |
Lsi02g01714 | 1499 | Gene3D | - | 249 | 438 | IPR036397 | GO:0003676 | |
Lsi02g01714 | 1499 | PANTHER | DNA POLYMERASE EPSILON CATALYTIC SUBUNIT A | 1195 | 1499 | IPR029703 | GO:0003677|GO:0003887|GO:0006260|GO:0006281|GO:0008622 | |
Lsi02g01714 | 1499 | PANTHER | DNA POLYMERASE EPSILON CATALYTIC SUBUNIT A | 788 | 1138 | IPR029703 | GO:0003677|GO:0003887|GO:0006260|GO:0006281|GO:0008622 | |
Lsi02g01714 | 1499 | PANTHER | DNA POLYMERASE EPSILON CATALYTIC SUBUNIT A | 474 | 697 | IPR029703 | GO:0003677|GO:0003887|GO:0006260|GO:0006281|GO:0008622 | |
Lsi02g01714 | 1499 | PANTHER | DNA POLYMERASE EPSILON CATALYTIC SUBUNIT A | 37 | 405 | IPR029703 | GO:0003677|GO:0003887|GO:0006260|GO:0006281|GO:0008622 | |
Lsi02g01714 | 1499 | SUPERFAMILY | DNA/RNA polymerases | 564 | 1354 | IPR043502 | - | |
Lsi02g01714 | 1499 | MobiDBLite | consensus disorder prediction | 1403 | 1418 | - | - | |
Lsi02g01714 | 1499 | SUPERFAMILY | Ribonuclease H-like | 69 | 562 | IPR012337 | - | |
Lsi02g01714 | 1499 | Gene3D | DNA Polymerase, chain B, domain 1 | 62 | 240 | - | - | |
Lsi02g01714 | 1499 | MobiDBLite | consensus disorder prediction | 1403 | 1486 | - | - | |
Lsi02g01714 | 1499 | SMART | polmehr3 | 246 | 1021 | IPR006172 | GO:0000166|GO:0003676|GO:0003887 | |
Lsi02g01714 | 1499 | Pfam | DNA polymerase family B | 937 | 1134 | IPR006134 | GO:0000166|GO:0003677 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lsi02g01714 | Lsi-Chr2:22855717 | Lsi10g01177 | Lsi-Chr10:16026004 | 3.73E-101 | dispersed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lsi02g01714 | K02324 | - | cann:107851523 | 880.552 |