Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi02g01714 AGGATGACCAATCAGTTGAGGAGTAGTGTAAACCGAAGGCGAGACTTCAGAGACAATAACTATAAGCGGAAGAAGCAAAGCATAATCCAGTCTGCTGAGGAGGATATTGAATCAAAGTTTGGATTCAATCTCTTCTCTGAAGGCGATAAGAGGCTTGGATGGTTGCTCACCTTCACTTCTTCATCTTGTAAGGATGAGGATACCGAAAAAGTCTACAGTTGTATCGATCTTTATTTTGTCACACAGGATGGCAGCAGTTTCAAATCAAAATATAAGTTTCGTCCTTATTTTTATGCAGCCACAAAGAATAAAATGGAAAATGATGTGGAGGCTTATTTGAGACGACGTTATAAAGGTCAAATAGCTGATATTGAGATTTTAGAAAAAGAAGACCTTGATCTTAAGAATCATTTGTCGGGATTGCACAAGGCATATTTAAAGCTATCATTTGACACTGTTCAAGAATTGATGAATGTAAAGAGTGAATTATTGCATGTTGTTGAAAGCAATAGGGAGAAGTCTGATGCTGCAGAAGCATATGATTCTATTTTATTTGGGAAAAGAGAACAGAGGCTTCAAGATTTTCTAGAATGTATTGTTGATCTTCGAGAGTACGATGTTCCTTACCACGTTCGCTTTGCTATTGATCACGATTTGCGCTGTGGACAGTGGTATGATGTCAGTGTATCAAGCACTGGTATTACTCTTGAGAAGAGAAAAGATCTTCTGCAACGTGCTGAAGTTCGGATATGTGCATTTGATATTGAGACCACAAAACTACCATTGAAATTTCCAGATGCTGAATATGACATGATAATGATGATTTCCTATATGGTTGATGGACAAGGGTACTTGATTATCAACAGAGAGTGTGTTGGAGAAGATATTGAGAATTTGGAATACACTCCAAAACCAGAATATCAAGGGTTCTTCAAAGTGAACAATGTGAAAAATGAGTTAGAGCTTCTCAAACTGTGGTTTGCCCATATGCGAGAGGTGAAACCTGGTATCTACGTCACCTATAATGGCGACTATTTTGACTGGCCATTTCTTGAAAGCAGAGCAGCATATCATGGGCTTAAAATGAGTGATGAAGTAGGATTTCAATGCGACAAGAATCAGGGAGAATGTCGTTCAAAATTTGCTTGTCATTTGGATTGCTTTGCCTGGGTAAAGCGTGATAGTTATCTTCCTCAGGGTAGCCATGGTTTGAAGCTTCCTTCTTTCTTCCTGGTTTTCTGTGGGTTCTGTTTGAATTGTCGAGGAGTCAATAAAATGAAAAGTGAGATTGTAAATAATGAAGTTATGCAATATTTATTCAATATCGTCATAGCCCCCTTGTCAGCACCCGTTTCCATCTCTCTCTCTCTTGAGAGAGTGAGAGCAGAAGGAAATGCAGATGCTGATATTTATTGTTTTAATCTTATGGCTGTCACAAAAGCGAAATTGGGGTACGATCCTCTTGAAGTGAATCCAGAAGATATGGTGCGGTTTGCAAAGGAAAAGCCTCAGATGATGGCTTCCTATTCCGTATCAGATGCTGTTGCTACATACTACTTGTACATGACCTATGTTCATCCTTTCATTTTTTCTCTAGCAACTATCATTCCAATGTCACCCGATGAGGTGTTGCGCAAGGGAAGTGGGACGCTTTGTGAAATGCTTTTAATGGTTCAGGCTTACGAGGCTAATGTCGTGTGTCCTAACAAACATCAATCAGATCCAGAAAAGTTCCATAACAATCGGCTTCTTGAAAGTGAGACATACATAGGTGGTCATGTAGAATGTCTAGAGAGTGGTGTATTTAGATCTGACCTTCCTACCAGTTTTAGACTTGATTCATCTGCTTATGATCAATTGATAAACAATCTAGATCGAGATTTGCAGTATGCCATTCAAGTAGAAGGAAAGATGGACTTGGAATTGGTGTCAAACTATAGTGATGTGAAGACTGCTATTACAGAAAAGGTGGCTAGAATTTCCTTATTCGATTGCGGGGATGAGCCTATGCGTGAAGAGTGCCCTCTGATCTATCACCTCGATGTAGCTGCAATGTATCCCAACATCATTTTAACAAATAGGCTTCAGGTGCAACAAACTTTCTTTTCCCTTTTAGTTGAAGAATATTTGATTGGTCTATGTTTTGAACCAAGGTTGTTTACTGTAAGCCATTGGCGATCTTTCGCTGGAAGATTTCACTTCTTGACTACCCTTCGTCATGTTACAACTTACAAGTCTATTGAGGTTACACTTGGGCAGTTTAAGCCCTCAGTGAAATTACTTCTTCCTAAAATAATTCTTTTCCTCAATGTTCTAAGCATTAGCTACATGTTTTTCATGGCATCAACAACTTATTCTTGTTTAATTCCAGCCGCCGTCATAACAGATGAGGTTTGTACTGCTTGTGATTTCAACCGTCCTGGAAAAACTTGTCTACGAGAACTTGAATGGGTATGGCACGGAGAGGTATTCGAGGCTAAAAGAAGGTCAACTCTCTCTCTTTCCCTACTTGTATTTTTTCATCTGTTCGACTATTATCATCTGAAGAGGCAAATTGAGTCTGAGTTTGTTGATAGTGGTACCGTTCGATTGTCAAAACAATTTCTTGAACTTCCAAAGTTGGAGCAACAAGCAAAACTCAAAGAGCGTTTAAAGAAATACTGTCAGAAGGCTTACAAACGGGTACTTGATAAGCCAGTCACTGAAGTTCGAAAAGCAGGGATCTGCATGAGGGAAAACTCCTTTTATATCGACACTGTTCGGCTCAATAAAGTTTGGAAGGGGAAACTATCAGAAGCTAAAGCAAGTGGAAATTCAATCAAGATCCAGGAAGCCCAAGACATGGTGGTTCTGTATGATTCTTTACAACTTGCTCATAAATGTATCCTCAACTCCTTTTATGGATATGTGATGCGAAAGGGTGCTCGTTGGTATTCGATGGAAATGGCTGGGGTTGTTACATATACTGGAGCAAAAATCATTCAGAATGCTCGTCTGCTGATTGAGAAAATTGGAAAACCACTAGAGTTAGACACTGATGGTATCTGGTGTGCACTACCTGGATCATTCCCAGAGAACTTTACCTTTAAGACAAAAGAATCAAAGAAGTTGACAATTTCATATCCATGTGTTATGCTTAATGTTGATGTGGCAAGGAACAACACAAATGATCAGTACCAAACACTTGTAGATCCTGTGAGGAAAATATATGAAATGCGTAGTGAATGCTCAATTGAATTTGAAGTCGACGGACCGTACAAGGCAATGATCCTTCCTGCCTCCAAGGAAGAAGGCATTTTGATCAAGAAGAGATATGCTGTCTTCAATGATGATGGAACCCTTGCAGAGCTAAAAGGCTTTGAGATTAAGCGTAGGGGGGAGTTAAAGCTCATCAAAGTTTTCCAGATTTATTTGTATCCTTACTCAAGTGGCATGGCCAAGTCTTATAATATAGATGCACATGCTGACATGCACCCGAAGCTGTTGTTTGGGGGACTTGTAAATGTTAAAATTATTATGAATTTGAAATTACCATTCTCAAGCATACGATTTTGGAAGGAAGAACTTAGAAATAGGTCATCCTCGAAAGCTGAACTTTTTGACAAGTTCCTTCATGGTTCCACGTTAGAGGAATGCTATTCAGTTGTTGCATCTGTTGCAAATCGCTGGCTCGATCTTCTAGATAGTCAAGGGAAAGATATTGCAGATAGTGAGTTGCTTGATTATATATCTGAATCCAGTACCATGAGCAAGTCTTTGGCAGACTATGGAGAGCAAAAGTCTTGTGCTGTTACCACTGCAAAACGTCTTGCTGATTTTCTTGGTGATACAATGGTCAGGGATAAAGGCCTACGTTGTCAATATATAGTTGCATGTGAACCCAAGGGAACACCGGTAAGTGAGCGTGCTGTTCCTGTTGCTATATTTGAGACTGATCCAGAGATAATGAAATTTTATGTACGCAAATGGTGCAAAATTTCATCAGAAGTTGGCATTCGATCCATCATCGACTGGTCCTACTACAAACAACGCCTAAGTTCAGCCATTCAAAAAATTATAACAATTCCAGCTGCCATGCAAAAGGTTTCAAATCCTGTCCCTAGGGTGGTCCATCCTGATTGGTTACATAAGAAAGTTCGTGAGAAGGATGATAAATTTCGGCAACAGAAAATAGTCAATATGTTTGCATCAAGCCGAGGTAAATATTTAGAAAACAATGATGGTGCTAGCAGCAGCAAAAATGTGATGAACGGCAAAAATTCTGATGATATAGAGGACTTTCAAAAGAAAACTAGTTCTTCAAGTGGCCCCAAACCAGTTGTTCGAAGTTACGACGTTAGAGCCATGAAACATTCAGTTACAAGAGATAGCCAAGTAGATTCCATGATGCAAGAAAAGTTTAAGGGTGCAGAATCAGGAAGCGATCCTTCTTCACCATTGCATTTCAAAGATATCGATAGAAATGAGGATTACCATGGATGGCTTGAAATGAAGAAATGA 4500 39.36 RMTNQLRSSVNRRRDFRDNNYKRKKQSIIQSAEEDIESKFGFNLFSEGDKRLGWLLTFTSSSCKDEDTEKVYSCIDLYFVTQDGSSFKSKYKFRPYFYAATKNKMENDVEAYLRRRYKGQIADIEILEKEDLDLKNHLSGLHKAYLKLSFDTVQELMNVKSELLHVVESNREKSDAAEAYDSILFGKREQRLQDFLECIVDLREYDVPYHVRFAIDHDLRCGQWYDVSVSSTGITLEKRKDLLQRAEVRICAFDIETTKLPLKFPDAEYDMIMMISYMVDGQGYLIINRECVGEDIENLEYTPKPEYQGFFKVNNVKNELELLKLWFAHMREVKPGIYVTYNGDYFDWPFLESRAAYHGLKMSDEVGFQCDKNQGECRSKFACHLDCFAWVKRDSYLPQGSHGLKLPSFFLVFCGFCLNCRGVNKMKSEIVNNEVMQYLFNIVIAPLSAPVSISLSLERVRAEGNADADIYCFNLMAVTKAKLGYDPLEVNPEDMVRFAKEKPQMMASYSVSDAVATYYLYMTYVHPFIFSLATIIPMSPDEVLRKGSGTLCEMLLMVQAYEANVVCPNKHQSDPEKFHNNRLLESETYIGGHVECLESGVFRSDLPTSFRLDSSAYDQLINNLDRDLQYAIQVEGKMDLELVSNYSDVKTAITEKVARISLFDCGDEPMREECPLIYHLDVAAMYPNIILTNRLQVQQTFFSLLVEEYLIGLCFEPRLFTVSHWRSFAGRFHFLTTLRHVTTYKSIEVTLGQFKPSVKLLLPKIILFLNVLSISYMFFMASTTYSCLIPAAVITDEVCTACDFNRPGKTCLRELEWVWHGEVFEAKRRSTLSLSLLVFFHLFDYYHLKRQIESEFVDSGTVRLSKQFLELPKLEQQAKLKERLKKYCQKAYKRVLDKPVTEVRKAGICMRENSFYIDTVRLNKVWKGKLSEAKASGNSIKIQEAQDMVVLYDSLQLAHKCILNSFYGYVMRKGARWYSMEMAGVVTYTGAKIIQNARLLIEKIGKPLELDTDGIWCALPGSFPENFTFKTKESKKLTISYPCVMLNVDVARNNTNDQYQTLVDPVRKIYEMRSECSIEFEVDGPYKAMILPASKEEGILIKKRYAVFNDDGTLAELKGFEIKRRGELKLIKVFQIYLYPYSSGMAKSYNIDAHADMHPKLLFGGLVNVKIIMNLKLPFSSIRFWKEELRNRSSSKAELFDKFLHGSTLEECYSVVASVANRWLDLLDSQGKDIADSELLDYISESSTMSKSLADYGEQKSCAVTTAKRLADFLGDTMVRDKGLRCQYIVACEPKGTPVSERAVPVAIFETDPEIMKFYVRKWCKISSEVGIRSIIDWSYYKQRLSSAIQKIITIPAAMQKVSNPVPRVVHPDWLHKKVREKDDKFRQQKIVNMFASSRGKYLENNDGASSSKNVMNGKNSDDIEDFQKKTSSSSGPKPVVRSYDVRAMKHSVTRDSQVDSMMQEKFKGAESGSDPSSPLHFKDIDRNEDYHGWLEMKK 1499
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 22855717 22867392 - Lsi02G017140.1 Lsi02g01714 656456
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi02g01714 1499 Gene3D Palm domain of DNA polymerase 861 1115 IPR023211 -
Lsi02g01714 1499 Pfam DNA polymerase family B, exonuclease domain 81 405 IPR006133 -
Lsi02g01714 1499 CDD DNA_polB_epsilon_exo 247 522 - -
Lsi02g01714 1499 Gene3D - 470 587 IPR036397 GO:0003676
Lsi02g01714 1499 CDD POLBc_epsilon 581 1361 - -
Lsi02g01714 1499 Gene3D - 249 438 IPR036397 GO:0003676
Lsi02g01714 1499 PANTHER DNA POLYMERASE EPSILON CATALYTIC SUBUNIT A 1195 1499 IPR029703 GO:0003677|GO:0003887|GO:0006260|GO:0006281|GO:0008622
Lsi02g01714 1499 PANTHER DNA POLYMERASE EPSILON CATALYTIC SUBUNIT A 788 1138 IPR029703 GO:0003677|GO:0003887|GO:0006260|GO:0006281|GO:0008622
Lsi02g01714 1499 PANTHER DNA POLYMERASE EPSILON CATALYTIC SUBUNIT A 474 697 IPR029703 GO:0003677|GO:0003887|GO:0006260|GO:0006281|GO:0008622
Lsi02g01714 1499 PANTHER DNA POLYMERASE EPSILON CATALYTIC SUBUNIT A 37 405 IPR029703 GO:0003677|GO:0003887|GO:0006260|GO:0006281|GO:0008622
Lsi02g01714 1499 SUPERFAMILY DNA/RNA polymerases 564 1354 IPR043502 -
Lsi02g01714 1499 MobiDBLite consensus disorder prediction 1403 1418 - -
Lsi02g01714 1499 SUPERFAMILY Ribonuclease H-like 69 562 IPR012337 -
Lsi02g01714 1499 Gene3D DNA Polymerase, chain B, domain 1 62 240 - -
Lsi02g01714 1499 MobiDBLite consensus disorder prediction 1403 1486 - -
Lsi02g01714 1499 SMART polmehr3 246 1021 IPR006172 GO:0000166|GO:0003676|GO:0003887
Lsi02g01714 1499 Pfam DNA polymerase family B 937 1134 IPR006134 GO:0000166|GO:0003677
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g01714 Lsi-Chr2:22855717 Lsi10g01177 Lsi-Chr10:16026004 3.73E-101 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi02g01714 K02324 - cann:107851523 880.552