Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi02g01721 ATGGCTTCCAACACCTTGATGAGCTGTGGCATTGCCACCACCGCCTTCCCTTCAGTCCTTTCCTCATCTAAGTCTAAATTCGCCGCCGCTGTCCCGATTTCCGGCGTCGCCGTCAATGCATCATCTCGATTTTCCATGTCCGCCGAGTGGATGCCTGGCCAGCCCCGTCCCCCCTACCTCGACGGCTCAGCCCCCGGTGATTTTGGGTTCGACCCTCTTCGGCTGGGAGAAGTGCCAGAGAATCTCGAGAGATTCAAGGAGTCTGAGCTAATTCACTGCAGATGGGCCATGCTTGCTGTTCCAGGGATTTTGGTGCCTGAGGCTTTGGGATTGGGCAACTGGGTGAAAGCTCAAGAATGGGCAGCAATTCCAGGAGGCCAAGCTACTTACTTAGGGCAACCAGTTCCATGGGGAACTTTGCCAACCATTTTGGTCATTGAGTTCCTTGCCATTGCCTTTGTAGAGCACCAGCGCAGCATGGAGAAAGACCCTGAGAAGAAGAAGTACCCTGGCGGTGCTTTTGACCCATTAGGCTACTCAAAAGACCCTGAAAAGTTGAAGGAATACAAAGTCAAAGAGATCAAGAACGGTCGATTGGCGCTGTTGGCTTTTGTTGGGTTCTGTGTGCAACAATCAGCATACCCAGGAACAGGGCCATTGGAGAACTTGGCAACTCACTTGGCTGATCCATGGCACAACAACATTGGCGATATTATCATTCCCAGATCGGTTTCGCCTTGA 741 52.23 MASNTLMSCGIATTAFPSVLSSSKSKFAAAVPISGVAVNASSRFSMSAEWMPGQPRPPYLDGSAPGDFGFDPLRLGEVPENLERFKESELIHCRWAMLAVPGILVPEALGLGNWVKAQEWAAIPGGQATYLGQPVPWGTLPTILVIEFLAIAFVEHQRSMEKDPEKKKYPGGAFDPLGYSKDPEKLKEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGDIIIPRSVSP 246
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 22918251 22919547 + Lsi02G017210.1 Lsi02g01721 656463
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi02g01721 246 Gene3D Chlorophyll a/b binding protein domain 51 237 - -
Lsi02g01721 246 Pfam Chlorophyll A-B binding protein 57 211 IPR022796 -
Lsi02g01721 246 SUPERFAMILY Chlorophyll a-b binding protein 40 240 - -
Lsi02g01721 246 PANTHER CHLOROPHYLL A-B BINDING PROTEIN 6, CHLOROPLASTIC 21 237 - -
Lsi02g01721 246 PANTHER CHLOROPHYLL A/B BINDING PROTEIN 21 237 IPR001344 GO:0009765|GO:0016020
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g01721 Lsi-Chr2:22918251 Lsi03g02207 Lsi-Chr3:33090052 3.38E-49 dispersed
Lsi02g01721 Lsi-Chr2:22918251 Lsi06g01458 Lsi-Chr6:25126453 6.22E-44 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi02g01721 K08907 - csv:101211428 499.204