Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi02g01730 ATGTCGATGTCTTCTTCCTCCGACTCCTTCGTTGACTCTCACTTACTCTGTGACGAGGACTCCTCCGGTATTTTGTCCGGAGAGTCGCCGGAGTACTCCTCTGACCTTGAATCGCCGGCCAGCAGCGAGGATTCTATCGCTAGCTTCATAGAGGACGAGAGGCACTTCGTTCCTGGAATTGATTACTTGTCGCGCTTTCAGTCTCAATCGCTCGATTCTTCCGCAAGAGCCGACTCTGTTGCATGGATTCTCAAGGTTCAAGCATATTACGGTTTTCAACCACTCACTGCATACCTTTCCGTCAACTACTTGGATCGATTCCTTTATTCTCGCCGCTTGCCGGAAACAAATGGATGGCCATTGCAGCTTCTTTCAGTAGCTTGTTTGTCACTTGCAGCTAAAATGGAGGAACCCATTGTTCCTTCATTCATGGATCTGCAGATTGAAGGAGCAAAATATATATTTGAACCTAGAACAATACGTAGGATGGAGCTTCTTGTGCTGACAACTTTGAATTGGCGGCTCCGATCCGTAACACCTTTCAGCTTTATCGGATTCTTCGCCTACAAAGTTGATCCCACCGGAACATTTTCCAGTTTTCTCAACTCACGCTCCACGGAAATTATTCTCTCCAATATTCGAGACGCTACCTTTCTTGAGTACTGGCCTTCCTGCATTGCTGCCGCTGCCTTACTTTGTGCGGCAAATGAAATACCCAATTTGACCCTCTTGAATCCTGAACAGGCCGAGTCTTGGTGCAATGGACTCAGCAAAGATAAAATTGTCGAATGTTATCGGTTAATGCAACCGTTAATAACGGAGAGTCGTCGGAGGAAGCCACCAAAAGTGATACCGCAGCTCCGAGTCAGAATCCGAGCTGGGTTGAGATACAGTGACTCGTCATCCTCCTCCTCCTCATCAAGGTTACCTTTTAAAAGGAGGAAGTTAAATAATTGCTTGTGGGTAGAAGATGACAAAGAAAATTCCAAGTTTAGAGCAGACGAATAA 1008 46.23 MSMSSSSDSFVDSHLLCDEDSSGILSGESPEYSSDLESPASSEDSIASFIEDERHFVPGIDYLSRFQSQSLDSSARADSVAWILKVQAYYGFQPLTAYLSVNYLDRFLYSRRLPETNGWPLQLLSVACLSLAAKMEEPIVPSFMDLQIEGAKYIFEPRTIRRMELLVLTTLNWRLRSVTPFSFIGFFAYKVDPTGTFSSFLNSRSTEIILSNIRDATFLEYWPSCIAAAALLCAANEIPNLTLLNPEQAESWCNGLSKDKIVECYRLMQPLITESRRRKPPKVIPQLRVRIRAGLRYSDSSSSSSSSRLPFKRRKLNNCLWVEDDKENSKFRADE 335
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 22987948 22989835 - Lsi02G017300.1 Lsi02g01730 656472
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi02g01730 335 CDD CYCLIN 76 168 IPR013763 -
Lsi02g01730 335 ProSitePatterns Cyclins signature. 76 107 IPR006671 -
Lsi02g01730 335 MobiDBLite consensus disorder prediction 21 40 - -
Lsi02g01730 335 SUPERFAMILY Cyclin-like 39 175 IPR036915 -
Lsi02g01730 335 PANTHER CYCLINS 24 318 IPR039361 -
Lsi02g01730 335 PANTHER CYCLIN-D1-1 24 318 - -
Lsi02g01730 335 SUPERFAMILY Cyclin-like 160 283 IPR036915 -
Lsi02g01730 335 SMART cyclin_7 81 169 IPR013763 -
Lsi02g01730 335 Gene3D - 48 264 - -
Lsi02g01730 335 Gene3D - 59 176 - -
Lsi02g01730 335 SMART Cyclin_C_2 178 311 IPR004367 -
Lsi02g01730 335 MobiDBLite consensus disorder prediction 26 40 - -
Lsi02g01730 335 Pfam Cyclin, N-terminal domain 46 175 IPR006671 -
Lsi02g01730 335 Pfam Cyclin, C-terminal domain 178 280 IPR004367 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g00899 Lsi-Chr1:7243105 Lsi02g01730 Lsi-Chr2:22987948 7.32E-33 dispersed
Lsi02g01730 Lsi-Chr2:22987948 Lsi04g00515 Lsi-Chr4:4784510 2.60E-109 dispersed
Lsi02g01730 Lsi-Chr2:22987948 Lsi08g01007 Lsi-Chr8:18603898 3.70E-57 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi02g01730 K18810 - csv:101210686 614.764