Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi02g01779 ATGGCTCTGCAGAGAATCCCTCACAGCACTCTAATGGAGATCCTGTTGAAGCTGGACCTCCAAACCCTCTGCTCCGTCGCTTGCGTCAGTAAAACCCTACAATTCGTCGTCGTTGAAACCATTTCACTCCTCTCCACTCTCCATCTTCCTATTGCTTTCTCTCCAGATTTTCGGACTCTGAAGATTGGCATTCTTGGTCGGTGCCGAGGCATGAAAAGCCTGACTGTTAATTGCCGCCGTCTTGATGATTCTTCTCTCGTGGATTTTCTTGGCCCTCATTTACTCGAGCTGAATTTGCTTTGCTGCTCTTTACTCTCTTATAAATTCCTTGCTGCCGTAGGCAAACTTTGTCCCAATTTGAGGTGTGAAAGTATCGAATATTTTCGTATTTGGCAGGTGCTTGTGCTTGAATTGGTAGCTCAAGATTCTCCTGAAGTATTCAATAGAAACTTGGCTGAACTGCTCACAAGATGCTTGTTCTTAGATTCAATATCCCTGAAGATTCGAGGAGTAGGAGATGTTGAGGCTAATTACTTTAGTACTGTTGAAGCATTTCTTCCCAAAACAGTCAAAACACTGAAGTTGAAGTCACTGCTTCATCAAGAAGCAGTTTGCATCATAAACAAACTAAGAGATTGTGGGAACTCTTTAATCCCCACCTATTCCAGAAACTTTGAATCTCCTCCGTTATCTTCAGGGTTAATGTTGCAGTGCTTGTCACTTACTTTGGATGTTATTTCTAATGAGTTAGTTATATCCATTGTCGAATCTTGTCCCTTTTTGGTAGAGCTTCACTTGGAAGACATGCCGAACCAAGAACAATTGGTGCACCGTGACTTGACCAATAGGGGACTTCAGTCATTGAGCACTTGTCATAATCTGGTATCACTTTCTCTTATTCGTGGAAGGCATAACCACCAAGTCTCTTTCAAAAAGCTGAATGATATGGGCATGTTTCTCTTGTCTGAGGGTTGCATAGGTCTTGAGTCAGTGAGATTCTGTGGATTCTCTAAAGTCAGTGATGCCGGATTTGCATCGATCTTTCACTCGTGCAATAGGCTGAAGAAATTTGAGATTCGTAATTCATCACATTTCTCAGACCTTGCACTCGACGGTTTTGATGCCATTGGATGCTCTGTAACAGAGTTGAGATTATTATCATGCAGTCTTATAACTTGTGAATCTGTGAAGCAGTTGGCCTACTCTACAAGCTTGGAAGTCCTTGATCTATGTGGCTGCAAAAGCATATCAGATTCTTGCCTTGAATCCATTTCCACTTTGTGCAATTTATCATCACTGAATCTAACATCAACTGATATAACCGACTACGGTTTATCTGTTCTTGGTCAGGGGAGTCTACCAATTGTACGATTGTCTCTTCGAAATTGTAAGAGAGTAACCGAAGAAGGAATCTATCGATTGTTTTATGGTGGCGGGACAGTGAGCAAGACATTGTCTGCCTTGGATCTTGGACACATTTCGGGAATAACCGATCGAGCAATCCAAATAATTGTTTCAGCTGGTGTGGGGATTACTGAGTTATGCATCAGATCATGCTTCCATGTGACTGATTCTTCAGTAGAAGCTTTGGCGATGAAGAAACAAATCCAAGGTGAAGGTAAGTTACTTCGTAGGCTTGATCTTTTTAATTGCATTGGTCTATCAATTGGTGCATGTAGATCATTTAGGGGGCCTCAGTTTCGTGGGTTACAATGGCTAGGAATAGGCAATACTCGTTTGTGTACTCATAGAGATGTTAGTTTACTTGAGTTTTGTTTCAAACGACCTTGGTTGACTTTGTGTTTGGAAGGCTGTGAAGTTGGATGTCATGATGGATGGCAATTCCATAGATCATAA 1857 41.79 MALQRIPHSTLMEILLKLDLQTLCSVACVSKTLQFVVVETISLLSTLHLPIAFSPDFRTLKIGILGRCRGMKSLTVNCRRLDDSSLVDFLGPHLLELNLLCCSLLSYKFLAAVGKLCPNLRCESIEYFRIWQVLVLELVAQDSPEVFNRNLAELLTRCLFLDSISLKIRGVGDVEANYFSTVEAFLPKTVKTLKLKSLLHQEAVCIINKLRDCGNSLIPTYSRNFESPPLSSGLMLQCLSLTLDVISNELVISIVESCPFLVELHLEDMPNQEQLVHRDLTNRGLQSLSTCHNLVSLSLIRGRHNHQVSFKKLNDMGMFLLSEGCIGLESVRFCGFSKVSDAGFASIFHSCNRLKKFEIRNSSHFSDLALDGFDAIGCSVTELRLLSCSLITCESVKQLAYSTSLEVLDLCGCKSISDSCLESISTLCNLSSLNLTSTDITDYGLSVLGQGSLPIVRLSLRNCKRVTEEGIYRLFYGGGTVSKTLSALDLGHISGITDRAIQIIVSAGVGITELCIRSCFHVTDSSVEALAMKKQIQGEGKLLRRLDLFNCIGLSIGACRSFRGPQFRGLQWLGIGNTRLCTHRDVSLLEFCFKRPWLTLCLEGCEVGCHDGWQFHRS 618
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 23560043 23562483 + Lsi02G017790.1 Lsi02g01779 656521

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi02g01779 618 PANTHER UNCHARACTERIZED 6 576 - -
Lsi02g01779 618 Gene3D Ribonuclease Inhibitor 49 475 IPR032675 -
Lsi02g01779 618 SMART LRR_CC_2 482 507 IPR006553 -
Lsi02g01779 618 SMART LRR_CC_2 508 533 IPR006553 -
Lsi02g01779 618 SMART LRR_CC_2 452 477 IPR006553 -
Lsi02g01779 618 SMART LRR_CC_2 428 451 IPR006553 -
Lsi02g01779 618 SMART LRR_CC_2 377 402 IPR006553 -
Lsi02g01779 618 SMART LRR_CC_2 91 116 IPR006553 -
Lsi02g01779 618 SMART LRR_CC_2 403 427 IPR006553 -
Lsi02g01779 618 SMART LRR_CC_2 325 350 IPR006553 -
Lsi02g01779 618 SMART LRR_CC_2 258 291 IPR006553 -
Lsi02g01779 618 Gene3D Ribonuclease Inhibitor 481 600 IPR032675 -
Lsi02g01779 618 ProSiteProfiles F-box domain profile. 1 47 IPR001810 GO:0005515
Lsi02g01779 618 PANTHER RNI-LIKE SUPERFAMILY PROTEIN-RELATED 6 576 - -
Lsi02g01779 618 SUPERFAMILY F-box domain 4 53 IPR036047 GO:0005515
Lsi02g01779 618 SUPERFAMILY RNI-like 278 579 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi02g01779 - - - csv:101218770 995.342
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g01779 Lsi-Chr2:23560043 Lsi11g01227 Lsi-Chr11:20881446 5.41E-72 dispersed
Lsi02g01779 Lsi-Chr2:23560043 Lsi08g01205 Lsi-Chr8:20592940 2.36E-07 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g797 . . . . . . . . . . . Cma09g01048 . Car09g00956 Sed01g2636 Cpe06g00856 . Bhi09g01852 Tan01g3265 Cmetu01g2709 . . Mch11g1340 . . . . . . . . . . . . Lsi02g01779 Csa07g01034 . . . . . . . . . . . . Cmo09g01054 . . . . . . . . . . . . . Cla09g02121 Cam09g2208 Cec09g2281 . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013838 0 2 0 0 0 1 1 1 1 0 1 1 1 1 1 1 1 0 1 1 1 1 0 1 1 1 1 1 1 1 24
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi02g01779 Lsi_Chr02 FPKM 0.902077 0.888907 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0