Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi02g01789 TCGAATTTCTACTCCCTCCTTAATTTCCCCTTACCTCCTCAGATAATAGTTGTTCAAATGGGCGGCGCCGGGAACGGTGAAGATCCCGAAGAACGTCCTTTCATCGTCGAAGCCCTTTCGTCCTCCAACGACCAGGATGAAGAACAATCGGTGAAGAGAAATGGTAAAGGGGATTTGGGAACGGCAATTGCTCATATTATTACTGGAGTGATCGGCGCTGGTGTGCTGTCTCTACCATGGAGCATGGCTCAGTTAGGGTGGATTGCCGGACCTGTGCTGTTGGGAGTGGCTTTTCCCGCGGTGACTTTAGCATTAGCGTTTATCTTGTGTGACTGTTATCGGTATCCAGATCCTGAATTTGGACAATTGAGAAACAAATCTTATCCTCAAGCCGTGAAGTTGCATTTAGGTTCGAGAAAAGTGGGAGCAAATATGTACGGCGAGTGTGGTGATCAGCTTCTGTTTGTCAACATAATAGAAATTTCTTGGGTTTTTCTTTTCTTTTTGGCAATTGAGAAAATAATTTGTTACAAGAGAGAAGGGGATGAAGCTTATAAATCATGCATTGCCCAAGATGAACACAGTTATTATCAAACCATAATATTTGGAGCTTTTCAAATAATTTTGTCACAAATTCCAGACATGCACAACATGGGATGCCTCTCCATTTTTGCTACAATTATGTCATTTTCTTACTCAACTATTGCCATTGCTCTTGGCCTTTTTCAAGTTTTAGAGAATGGTAAAATCAAAGGTAGCATCTCAGGAATCCCTGCTGCCAATCTTATTCAAAAATTATTTATAGCATTTGAAGCTATTGGAGATATTGCTTTTGCTTATCCATTTACACTTATTCTTCTCGATATACAGGATACATTGAAGAATCCACCTCCAGAAAACGAAACAATGAAGAAGGCATCAACAATAGCCATTTCAGTAACAACATTCTTCTACTTGTGCTGTGCATGCTTTGGGTATGCAGCCTTTGGTGATGCCACTCCTGGAAATCTCTTGACTGCATCTCCCTTTTTTCACCACTTTTGGCTTCTTTCCTTTGCTAATGCTTGTGTTGTTCTTCATTTGTTGGGAGGTTATCAGATTTTCAGCCAGCCAGTTTTCTCAATTGTTGAGAGATGGACAAGAAGGAAATATCCAAACAACAATGCTTTTGTGAACAAACAATTCTCAATCAAACTCCCAATATTGCCTGCCTTTCAATTACATCCCTTCAGGCTTTGTTTCAGAACAGCCTATGTTTTGTCAACAACTTATTGTGCTGTGCTTTTCCCTTACTTCAACCAAATTTTGGGATTGATCGGAGCTTTGAACTTTTGGCCTTTTGTCATTTATTTTCCTCTTGAAATGTTCTTCAAGCAAAGGAAAATTAGGGCTTGGACAACCACATGGATTGCTTTTAGGGTTCTTAGTTTTCTTTGTTTTGTTGTCACTATTATGGGATGTATTGGTTCACTTGAAAGAATCATTAGTGCTAAGTTTAGTTGA 1503 39.72 SNFYSLLNFPLPPQIIVVQMGGAGNGEDPEERPFIVEALSSSNDQDEEQSVKRNGKGDLGTAIAHIITGVIGAGVLSLPWSMAQLGWIAGPVLLGVAFPAVTLALAFILCDCYRYPDPEFGQLRNKSYPQAVKLHLGSRKVGANMYGECGDQLLFVNIIEISWVFLFFLAIEKIICYKREGDEAYKSCIAQDEHSYYQTIIFGAFQIILSQIPDMHNMGCLSIFATIMSFSYSTIAIALGLFQVLENGKIKGSISGIPAANLIQKLFIAFEAIGDIAFAYPFTLILLDIQDTLKNPPPENETMKKASTIAISVTTFFYLCCACFGYAAFGDATPGNLLTASPFFHHFWLLSFANACVVLHLLGGYQIFSQPVFSIVERWTRRKYPNNNAFVNKQFSIKLPILPAFQLHPFRLCFRTAYVLSTTYCAVLFPYFNQILGLIGALNFWPFVIYFPLEMFFKQRKIRAWTTTWIAFRVLSFLCFVVTIMGCIGSLERIISAKFS 500
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 23696701 23704289 - Lsi02G017890.1 Lsi02g01789 656531

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi02g01789 500 PANTHER AMINO ACID PERMEASE 7 ISOFORM X1-RELATED 43 499 - -
Lsi02g01789 500 PANTHER OS05G0424000 PROTEIN-RELATED 43 499 - -
Lsi02g01789 500 Pfam Transmembrane amino acid transporter protein 59 495 IPR013057 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi02g01789 K24917 AAP; amino acid permease - jre:108985832 541.191
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g01789 Lsi-Chr2:23696701 Lsi04g02310 Lsi-Chr4:30312610 6.85E-88 dispersed
Lsi02g01789 Lsi-Chr2:23696701 Lsi04g02413 Lsi-Chr4:31246667 1.23E-119 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g742 . . . . . . . . . . Cma01g01047 . . . . . . . . . . . . . . . . . . . . . . . . Lsi02g01789 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013706 2 1 0 1 1 1 1 0 1 0 1 1 1 0 0 1 1 2 1 1 0 1 0 1 1 1 0 0 1 2 24
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi02g01789 Lsi_Chr02 FPKM 1.884164 2.020715 1.799475 1.987567 22.10446 19.348083 22.745207 2.563577 2.44147 2.262469