Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi02g01801 ATGTTGTGTGATTTATGGAGTGGAAATAATTATATTGATAGAGATAGAGCCTGTAGGGTCTTCATTCCATTAACTATTACCTGCACGCCGTCAGATTACTCAATTATGTTTCTTCAATGGCTGAATTTGGCTTTAAAAGAATTGTCCTTAGGAATTAGGAGGAAAGCTAGATTGAAAAATCGTTTTTTGAATTTCAAAAGTTACAATTTTATACTTCATGTATTGCCCTTAGTTCTGATTTGTTTTGTAACTTTTAAGTTGCGACGCATTTCGGTTTGGCTCGTATTCAGTCTTACACTTCCTGAAAACACTTACAAAATTGTTAATGCATCCAGGAGGAATCAAGCAGCAGAATGGCTACGCCAAATGGATCATGGAGCATCAGGAGTACTATCGAAGGAGCCCTTTGAAGAAGAATTCTGTCTTGCACTTCGCAATGGCCTTATCCTCTGCAATGTTCTCAACAAAGTCAATCCTGGTGCTGTTCTCAAGGTGGTGGAGAGTCCAGTTGTAACAGTTCAGTCAGCAGAAGGAGCTGCACAATCTGCAATCCAGTACTTTGAGAACATGAGGAACTTCTTGGACGCAGTTAAAGACATGAAGCTTTTGACATTTGAAGCTTCTGACTTGGAAAAGGGAGGTACTTCAGGAAAAGTTGTAGAGTGTATTCTCTGCTTGAAAGGATATTACGAGTGGAAGCAAGCTGGTGGGATTGGGGTTTGGAGATATGGAGGAACCGTACGGATCACATCTCTCGCCAGAAGTTCACCATGCATAACTGAAAGTGAGAGTACAGACGAGTCGGTAGACGAATCAGATTCATCTCAGTTCGAGCAGCTGCTAGACTTTCTCCATCTTTCTAATGAACTTTCAGTTGAAGAATCCAGAACTTGCAGTGCTCTTGCTTTTCTTTTTGATCGTTTTGGACTTAAACTTCTACAAGCATACCTCCGAGAGAGTGAAGGGATTGAAGATTTGCCTTTAAATGCAATGGTAGGTAAGGTCCTTTTCGTGTTGTACATTGTAATTGATGCATTACTTAGCAAGGTTGTTAAGGATTTCTCTGCACTGCTTGTGTCTCAAGGCACTCAGCTTGGACTCTTTCTGAAGAAAATATTGAAAAGTGACTTGAGTTCGCTGTCAAAATCTGAATTCATTGAAGCAATTTCTCGATACATCAACCAAAGAGCTAATATGGCATCAAACGACTTCTCCAAGTTCTGTGTTTGTCGAGGAAAACGTGAGGTTATTCATAGGGCTCCTGCTGGCCATGATGAACTGGTTCATGCTCAACAGAATCAGATTCAGGTTCTAATGCGAGTGCTTACTGTATATGCGTTGTTTCTAGTTCTAAAGCTATCAGAGCTAAAATCAGCATTTCAACAGACCAAACTTGAAGTTAAACACATACAGTCTCAATGGAATGAAGAAGTTGAAAGGCTGGAACATCATCTCAAGGGCCTTGAGATGGCTTCCTCTTCTTACCACAAGGTCTTGGAAGAGAATCGTATACTTTACAATCAAGTTCAAGACCTTAAAGGATCAATAAGGGTGTACTGTAGAGTGAGACCTTTCTTATCGGGACAATCAAATCAGCATTCTACAGTGGACTATATTGGAGAAAATGGGAACATTATGATTGCCAATCCTCTAAAGCAAGGCAAAGAAGCAAGAAGAGTATTTTCCTTCAATAAAGTTTATGGAACTAATGTTACCCAAGAAAAGATATATATCGACACTCAACCGTTGATCAGATCTGTTCTTGATGGTTTTAATGTATGCATCTTCGCATATGGACAAACTGGCTCGGGAAAGACGTATACAATGAGTGGCCCAGATTTGATGACTGAGGACACATGGGGCGTTAATTATCGAGCTCTCAATGACTTATTCCAGATATCAAATGCAAGGTTGGATATGATAAAGTATGAAGTTGGAGTTCAAATGATTGAAATATACAATGAGCAAGTGAGAGATTTGTTGGTCAGTGATGGCTCAAACAGAAGATATCCTTTTAAACAACAAAATATACGAAACAACTCTCAACTTAGTGGTCTTAATGTGCCTGATGCGAGCTGGGTTCCTGTGACGTGTACTCAAGATGTTCTTAGTTTGATGAGAATTGGCCAGAAAAATCGAGCTATTGGTGCTACGGCTTTAAATGAGAGAAGTAGTCGCTCGCACAGTGTTTTAACAATTCATGTCCTTGGAAGAGATTTGGTCTCCGGATCCATCCTTAGGGGGTGTCTTCATCTAGTAGATCTAGCTGGGAGTGAAAGAGTGGACAAATCTGAAGCTGTTGGCGACAGACTAAAGGAAGCACAACATATAAACAAATCCCTCTCTGCACTTGGAGATGTGGTTTCTGCCCTTGCACAAAAGAGTGCACATATTCCATACAGGAATAGCAAACTCACTCAACTCCTACAAGATTCTTTAGGTGGACAAGCTAAGACTTTGATGTTTGTACATATAAATCCCGAAGTTGATGCCATTGGAGAGACAATTAGCACGCTTAAGTTTGCTGAGAGAGTTGCCTCCATAGAATTAGGTGCAGCTCGCTGTAATAAAGAAAATGGTCAAATTCGAGAACTTAAAGACGAGATATCGAATCTTAAATCGGCATTGGAGAGGAAGGATGCAGAGCTTGAACAAGTAAAAAGTGGCAATACTCGAGCCTTAGTAGAAATTCAGAAGCCAAGAGCTGCCTCTCCCTTCCGTGTTCTTAGACATGGTACCAATGGAGGTGGCAAGCTTGAAAATTGTCAACGGCCTTTGGATGATGCTAAAACTTTGGAGGCTAGAAGCTACTCTTCAGGAAAGCAAAGAAGGTCAAGATTTCCCTCTACATTCACAGAAAAAGATGCAATAAAAATGCCATTATTAGCTGAAGAGAGATCAACAACAAGTTCAAGCTCTGGAAACCCAAGGTCACCATCTCCACCAGTTAGGAGATCAATATCAACAGATAGGGGTGCCTTTATAAGAAGCAAGGTTAAAACAGAGACGAACGAGAACCAACCAATTGCAAAGCCTTCATTTCCGGCAAGAGTGCATGTTAACAAGTCGATGGCCTCAGTCCCAGCAATCGATAATCGAGGAAGAGTAAACATCAGTTCTCAAGAGCATGAAAACTTCTCCGATGCCTTGGTTGGTATCCAAAAGGCAATGGCCTCAACAAAGAAGAAACAACTGGTTTGCCAAGAAAATAATGAAGATGAACAACAGGTGAAGCAGTCTCTAAATACAATGCAAGGTGGTGCAAGGAGAAGCAGAAATGAAGGCAAAACCAAAGCAAAGCAACAGCATTTACCTGGTGCAGCAGCTAGGATTAATAATCAGAAGCAGCCTGAGCATGTGGTAACAACATTACTTACTGACATTAATGCTGCTGTAAAAATGGAGGATGCAAGAAAGAGTGAATTCTCTGAAATGGAGAACGAGCATTTTCTTGTGGGATTGCCTCTTGATGGTGCTTTGAAGGTGAAAAAAGCTCGTCAGAACTTCCCAAGAAACTCTCAGAATCTGGAACCACCAAGGTACAACATGAAATTATACTATTCGGTTAAAGTACCAGTTTCTGGCGCTGAAAGTTTACTGAGTACAAGTAAAGTTGAGAATGGGAGTCGCAATCAAACTGAAGTTAGCGACAAATCACTGTCTGAATTTAGAAGAAGTAGATCAACACCTCGCGGGAAATTTTTGTCAACTGAAGAATTTTCAAGTTCAATAGAATACTGCATTTCTAGGGTTTATATCTCCGGCGATGATTTTTGTGAATTTCATCGACGAATGACAGCCATGGCGGGATTCAGCATCCGAGCCTCAATTCAGCTTCAACATAGCGTTCTTTCGATATCCTGGTGA 3867 40.73 MLCDLWSGNNYIDRDRACRVFIPLTITCTPSDYSIMFLQWLNLALKELSLGIRRKARLKNRFLNFKSYNFILHVLPLVLICFVTFKLRRISVWLVFSLTLPENTYKIVNASRRNQAAEWLRQMDHGASGVLSKEPFEEEFCLALRNGLILCNVLNKVNPGAVLKVVESPVVTVQSAEGAAQSAIQYFENMRNFLDAVKDMKLLTFEASDLEKGGTSGKVVECILCLKGYYEWKQAGGIGVWRYGGTVRITSLARSSPCITESESTDESVDESDSSQFEQLLDFLHLSNELSVEESRTCSALAFLFDRFGLKLLQAYLRESEGIEDLPLNAMVGKVLFVLYIVIDALLSKVVKDFSALLVSQGTQLGLFLKKILKSDLSSLSKSEFIEAISRYINQRANMASNDFSKFCVCRGKREVIHRAPAGHDELVHAQQNQIQVLMRVLTVYALFLVLKLSELKSAFQQTKLEVKHIQSQWNEEVERLEHHLKGLEMASSSYHKVLEENRILYNQVQDLKGSIRVYCRVRPFLSGQSNQHSTVDYIGENGNIMIANPLKQGKEARRVFSFNKVYGTNVTQEKIYIDTQPLIRSVLDGFNVCIFAYGQTGSGKTYTMSGPDLMTEDTWGVNYRALNDLFQISNARLDMIKYEVGVQMIEIYNEQVRDLLVSDGSNRRYPFKQQNIRNNSQLSGLNVPDASWVPVTCTQDVLSLMRIGQKNRAIGATALNERSSRSHSVLTIHVLGRDLVSGSILRGCLHLVDLAGSERVDKSEAVGDRLKEAQHINKSLSALGDVVSALAQKSAHIPYRNSKLTQLLQDSLGGQAKTLMFVHINPEVDAIGETISTLKFAERVASIELGAARCNKENGQIRELKDEISNLKSALERKDAELEQVKSGNTRALVEIQKPRAASPFRVLRHGTNGGGKLENCQRPLDDAKTLEARSYSSGKQRRSRFPSTFTEKDAIKMPLLAEERSTTSSSSGNPRSPSPPVRRSISTDRGAFIRSKVKTETNENQPIAKPSFPARVHVNKSMASVPAIDNRGRVNISSQEHENFSDALVGIQKAMASTKKKQLVCQENNEDEQQVKQSLNTMQGGARRSRNEGKTKAKQQHLPGAAARINNQKQPEHVVTTLLTDINAAVKMEDARKSEFSEMENEHFLVGLPLDGALKVKKARQNFPRNSQNLEPPRYNMKLYYSVKVPVSGAESLLSTSKVENGSRNQTEVSDKSLSEFRRSRSTPRGKFLSTEEFSSSIEYCISRVYISGDDFCEFHRRMTAMAGFSIRASIQLQHSVLSISW 1288
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 23822236 23831896 + Lsi02G018010.1 Lsi02g01801 656543

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi02g01801 1288 Pfam Calponin homology (CH) domain 111 231 IPR001715 GO:0005515
Lsi02g01801 1288 MobiDBLite consensus disorder prediction 1070 1106 - -
Lsi02g01801 1288 MobiDBLite consensus disorder prediction 933 991 - -
Lsi02g01801 1288 PANTHER KINESIN-LIKE PROTEIN KLP-3 109 1232 - -
Lsi02g01801 1288 SUPERFAMILY Calponin-homology domain, CH-domain 109 248 IPR036872 -
Lsi02g01801 1288 MobiDBLite consensus disorder prediction 1202 1216 - -
Lsi02g01801 1288 Pfam Kinesin motor domain 521 848 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Lsi02g01801 1288 ProSiteProfiles Kinesin motor domain profile. 515 848 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Lsi02g01801 1288 Gene3D - 102 231 IPR036872 -
Lsi02g01801 1288 Gene3D Kinesin motor domain 457 850 IPR036961 -
Lsi02g01801 1288 SMART ch_5 112 229 IPR001715 GO:0005515
Lsi02g01801 1288 MobiDBLite consensus disorder prediction 1070 1090 - -
Lsi02g01801 1288 MobiDBLite consensus disorder prediction 1202 1224 - -
Lsi02g01801 1288 ProSiteProfiles Calponin homology (CH) domain profile. 110 231 IPR001715 GO:0005515
Lsi02g01801 1288 PRINTS Kinesin heavy chain signature 798 819 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Lsi02g01801 1288 PRINTS Kinesin heavy chain signature 749 767 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Lsi02g01801 1288 PRINTS Kinesin heavy chain signature 590 611 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Lsi02g01801 1288 PRINTS Kinesin heavy chain signature 718 735 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Lsi02g01801 1288 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 515 884 IPR027417 -
Lsi02g01801 1288 MobiDBLite consensus disorder prediction 964 985 - -
Lsi02g01801 1288 SMART kinesin_4 513 856 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Lsi02g01801 1288 Coils Coil 855 889 - -
Lsi02g01801 1288 PANTHER KINESIN-LIKE PROTEIN KIN-14F 109 1232 - -
Lsi02g01801 1288 Coils Coil 453 491 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi02g01801 K10406 KIFC2_3; kinesin family member C2/C3 - csv:101221138 1865.89
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g01801 Lsi-Chr2:23822236 Lsi03g01095 Lsi-Chr3:20879148 0 dispersed
Lsi02g01801 Lsi-Chr2:23822236 Lsi04g01248 Lsi-Chr4:19443359 2.63E-81 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g727 Blo03g00494 . . . . . . . . . Cma01g01058 Cma09g01033 Car01g00932 Car09g00939 . Cpe06g00841 Cpe02g00838 Bhi09g01820 . . . . Mch11g1312 . . . . . . . . Cone6ag0001 Cone9ag0003 . . Lsi02g01801 Csa07g01062 . . . . . . Bpe11g00603 . . Bma14g00667 . Cmo01g01099 Cmo09g01035 . . . . . . . . . . . . . Cla09g02100 Cam09g2186 Cec09g2255 . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007328 0 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 3 2 1 1 1 1 1 2 1 1 1 1 1 36
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi02g01801 Lsi_Chr02 FPKM 1.459643 1.571762 7.674425 7.433897 7.515379 7.7117 9.087785 5.20764 4.485457 4.712814