Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi02g01802 ATGATGGTGAAGAAAAGCGGCGTTTTTACTTGCTCGAAAGCCAGGGTGTATAGCTCGTCAGGTCCTGTTAGGTACATTCCAAAAAGGTCTTTAAATGATAAGAAATCCAAAACACATTCGGCACCGGAAATTGTGAATGGGAACGATTTCAGTAGTGGGTTGGATGTTAATGCTCGGAGAATTGAGGTTAAACATAGGGGTGCAGTGCCGAGAAGTAATTTGAATGATAAATTGCGTGATCAAAATCAGGATGAGAAGGGAAACTACTCAGCTGGTGGAAGTATGCGAGGACTTGAAAATGAATTTGATGACAATTTGAGCTATGTTGACGATCTCTTGCAAGAGCCTGAGGCAGTAGATGAGGAGTTAAATATTTATGACAAGAAATGTTATAAGCAAGACGCTGAGAAATTGGCAATTGAATTACTTGCAACAAGAGCCTTCACTGCAGTTGAGCTGAGGAAGAAATTGCTTGGCAAGAGGGTCTCTCCGGACACAGTGGAAGCAGTGATCAATGATTTCAAGAGCAGGGGGTTGATCAACGATGGGTTGTATGCTGAAGCATTTTCTCGTTCGAGGTGGTCTTCCTCCAGTTGGGGACCCAGGAAGATCAAGCAGTTTGTAGGACTAGAGAAACTTGTTTACGAGTTGGGAAGCTTTTGTATGAGTTTTATGATACTGAGAGTGAGAAGCAATTTTTTGAATCAGGCACTTGTAAATAAGGGGATAGGAGGGGAAGTTGCTCAGAAAGCAATTAAACTGGTTTTTGAAGATGGTGAAGAATCAGGTGATGGAATGTCAAGTGTGGGATTGTCAAAGGTTTCAATGGATCATTTGTTTGTTCAAGCCTCGAAACAGTGGTTGCGAGGCCGGGATGCACCTGAAGAGACTAGAAAATCAAGAATAGTTAGGTGGCTTCAATACCGGGGTTTTGACTGGGGTGTTACTAGAACCATTCTAAAGAAATCCTTTGGGACAGAAATTTCCGCTACGGCGGCGATTGAACTGCCGCCATTGCCGGCTTCTTGTCGTCGGTTAGTAGCTCTTCTCAATTCGACATGTCGAATCTCCTCGAGCATGGTGACGACATCTTTCATAGGGGGTCGTTCGTCGGCCTTAACGCTGGCACAGATCAATGCGACGGCTAGGGTTTGA 1155 44.16 MMVKKSGVFTCSKARVYSSSGPVRYIPKRSLNDKKSKTHSAPEIVNGNDFSSGLDVNARRIEVKHRGAVPRSNLNDKLRDQNQDEKGNYSAGGSMRGLENEFDDNLSYVDDLLQEPEAVDEELNIYDKKCYKQDAEKLAIELLATRAFTAVELRKKLLGKRVSPDTVEAVINDFKSRGLINDGLYAEAFSRSRWSSSSWGPRKIKQFVGLEKLVYELGSFCMSFMILRVRSNFLNQALVNKGIGGEVAQKAIKLVFEDGEESGDGMSSVGLSKVSMDHLFVQASKQWLRGRDAPEETRKSRIVRWLQYRGFDWGVTRTILKKSFGTEISATAAIELPPLPASCRRLVALLNSTCRISSSMVTTSFIGGRSSALTLAQINATARV 384
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 23832061 23838554 + Lsi02G018020.1 Lsi02g01802 656544

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi02g01802 384 Pfam RecX family 160 206 IPR003783 GO:0006282
Lsi02g01802 384 Pfam RecX family 234 322 IPR003783 GO:0006282
Lsi02g01802 384 PANTHER REGULATORY PROTEIN RECX FAMILY PROTEIN 234 322 IPR003783 GO:0006282
Lsi02g01802 384 PANTHER REGULATORY PROTEIN RECX FAMILY PROTEIN 9 206 IPR003783 GO:0006282
Lsi02g01802 384 Hamap Regulatory protein RecX [recX]. 97 327 IPR003783 GO:0006282
Lsi02g01802 384 Gene3D - 135 179 IPR036388 -
Lsi02g01802 384 MobiDBLite consensus disorder prediction 66 84 - -
Lsi02g01802 384 MobiDBLite consensus disorder prediction 66 96 - -
Lsi02g01802 384 Gene3D - 181 207 IPR036388 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi02g01802 - - - bhj:120085566 491.886
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g726 . . . Bda09g00446 . Bpe08g01083 . . . . . . . Car09g00938 Sed07g2766 Cpe06g00840 . Bhi09g01817 Tan01g3232 Cmetu01g0567 . . Mch11g1311 . . . . . . . . . . . . Lsi02g01802 Csa07g01063 . . . . . . . . Bma07g01238 . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013129 1 2 0 1 1 1 1 0 1 1 0 0 0 1 1 0 0 1 1 0 1 2 1 1 1 1 1 4 1 1 27
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi02g01802 Lsi_Chr02 FPKM 1.361111 1.045625 4.564767 2.278423 2.574964 3.158073 5.077154 2.171374 1.742446 0.0