Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi02g01803 ATGCCTGCAATTCTAAGGAATCCCTTTCTTCCTCCTCATTTCTTCACCATAGCCTTGATTTTATGTGTAAAATCCCTTCTCTTTTCTTCTTGTTACTCCATTGATGAGCAGGGTAGAATTCTTCTTGAATGGAAGAATAATCTAACAAGCCCCACAAATGTTTTGAGTTCATGGAATCCGGAGACGGCAACGCCATGTTCATGGTTTGGAGTTATGTGCAACTCCAATGGAGAGGTGGTGGAGATAGCCCTGAGACTAGTGGAATTGCAAGGTACATTGCCTACAAATCTTCAGGCTCTTAAGTTCTTGAGGGTGCTTGTGATCTCTGAGACGAATATTACTGGAAGAATTCCAAAAGAGTTTGGAGATTATAACGAGCTCAATGTTCTTGATCTTAGCAAAAATTACCTCTTGGGAAAAATCCCAGACGAGATTTGCAGGCTGAGCAAGCTGCAGGATTTGTTACTTAATAACAATGATTTTGAAGGGAACTTACCCTTGAAGATTGGAAATCTTTCAAGCCTTGTGAATTTCCTAGTCTCAGACAATAGTATCAGTGGGGAGATTCCAAAGAGCATTGGAATGTTGAAGAATCTTTTTCTTTTCAAAGCTGGAGGGAATAAACTTCTAGAGGGTGTGTTGCCATGGGAGATTGGAAACTGCAGCAGTTTAACGGTGTTAGGCTTATCCGACACCGGAATCTACGGTCCTCTTCCTTCATCAATTGGGATGCTGCAAAAAATCCAGATCATACACATATATAGATCACAACTTTATGATCCACTCCCAGAAGAGATTACAAACTGTAGTGAATTGCAGACTCTTAGACTGTATCAGAATGGTATTTCTGGGCCGATACCAAGACGAATCGGGGAGATGAAAAAGCTTAAAGTCCTTCTTCTATGGTTGAACTTGATGGAGGGTGAAATTCCAGAAGAAATTGCAAACTGCACCGAACTGGTACTATTTGATTTTTCAGAAAATTCTCTAACAGGACCTATACCAAAAAGTCTAGTACGACTTCAAAAACTTGAAGACATTGAACTAAGTCTTAATCAGCTTAGTGGTACATTACCACCTGAAATTTTTAATATTTCGACTTTGGTTCACTTGGAAATAGACAATAACAATTTTTCAGGGGAGATACCAGATAATATAGGCAACCTGAAGAACCTGCGTACATTGTTACTATGGGAGAACAAATTAACAGGCACTATTCCCATCACTCTCCCAGACTGCCCATATCTCATAATGATTGATTTATCTCTCAATCACTTAACAGGTCCAATACCCACACGGATTTTTGCTTTGAAAGAACTCCAAAAACTTCTTCTCTTATCAAATAATCTATCAGGGATCATTCCTCCTGAAGTTGGAAACTGTACCACACTATCCAGGCTAAGACTGTCTAACAATAAGCTTGGAGGTACTATTCCATCAGAGATGGGAAATCTGATGAACTTAGAACTTCTTGACTTGGGTAGAAACCATTTTGTTGGTGGATTTCCTTCATCCTTTTCCAAATGTAACAAGCTTGACTCTCTTGACCTACGTTCAAATAGGCTCACTAGTCTTCCAAATACTCTGCCAAAGAGCCTAGTGTATTTTAATGTATCCAACAACAGGCTTAAAGGTCAGCTCAACCCCAACATTGGAGAATTGATGGATTTAACTAAACTAGACCTCAAAAACAACCAGCTTTCAGGGAAAATCCCTGCAGAAATTGTTTCCTGTGAGAAAATCCAGTTTTTAGACCTCAGCAACAATTTCTTCTCTGGGGAACTCCCTAAGCAATTAGGTACATTTGCTTCACTTGAAATTTCTCTTAATCTAAGTTACAATCAATTCTCAGGTCAAATCCCATTTGAATTCTCTGGTCTTACCAAGCTAAGTATTCTAGATCTCTCCCACAACAACTTCTCTGGGGAACTTAGCTTCCTTGCACAGCTTGAAAACCTTGTCACTCTAAACATCTCCTACAACCACTTCTCTGGGAAATTGCCCGACACACCCTTCTTTCATAAGCTCCCTGAAAGCGCCATTATCGGAAACACAGACCTCCTCCATTCAGATGGAGGAGATAATCCTAATGACAATAGGGAATCCAGCAACATAAGCAAAGATGTAATACATATAGCCATGCCCATCTTGATCAGCATAAGTGGAGTGCTGTTCTTTCTAGGATTCTACATGCTAATTCGCTCCCACATGGCTCGTTTCATCCTCTTCACAGAAGGCAATAAATGGGAAATTACCCTGTTTCAAAAGCTCGATTTCTCAATCGACCACATGATAAGAAACTTAACTGCATCCAATGTGATCGGCACAGGAAGCTCCGGTGCCGTTTACAGAATCACAACCCCTAATGGGGAAACAATGGCAGTGAAGAAAATGTGGTCCACTGACGAAACTGAAGCCTTCAACACTGAAATCCAAACATTGGGATCAATTCGACACAAGAACATAATCAGACTACTGGGTTGGGGATCCAACAGGAATTTGAAGCTCCTGTTTTATGATTATGTTCCAAATGGAAACTTGAGTTCCCTTATCCATGGCCCTGAAAAAGGAGAAGCAGAATGGGAAGTCAGATACGAAGTCCTTTTAGGAGTGGCTCATGCTTTAGCATATCTTCACCATGATTGTATTCCACCTATCTTACATGGCGATGTGAAAACTATGAATATCCTGCTCGGGCATGACTTTGAACCATATCTAGCCGACTTTGGGATAGCCAAAATCGTGAGTACAAAAAGCGACAATGATAATACAGAGACGCCATTGTTGAGACCTCAACTTGCTGGCTCTTTTGGCTACATGGCCCCTGGTATGTTCATTTCTCTTCCCTTTTCAAAACCCATATTTCGATTTTGGCAAATAAACTCCATGGATTCAAAACTTAGCGTTTTCTTGATGATTACAGAAAATGGGTCGATGATGAGAGTTACAGAGAAGAGTGATGTGTATAGCTTCGGTGTGGTGATAATGGAAGTTCTAACAGGGCGGCACCCGCTGGACCCGACTTTACCAGGAGAAGCCAATTTGGTGCAATGGGTACAAGACCATTTCGCCACACACCAAAACACAGCCGACATTTTCGATTCAAAGCTCAGAGGAAGAACCGATCCCACAATCCACGAAATGATTCAAACCCTAGCCGTCGCATTGATCTGTGCCAGCGTTAAGGCCGACGAACGACCCCCTATGAAAGATGTCGTCACCATGCTCGAGGAGATTCGACATGTCGAATTGAGAAGAGCTACTAACCGACGACAAGAAGCCGGCAATGGCGGCAGTTCAATCGCCGCCGTAGCGGAAATTTCTGTCCCAAAGGATCTTTCTAGGAATTGA 3351 41.6 MPAILRNPFLPPHFFTIALILCVKSLLFSSCYSIDEQGRILLEWKNNLTSPTNVLSSWNPETATPCSWFGVMCNSNGEVVEIALRLVELQGTLPTNLQALKFLRVLVISETNITGRIPKEFGDYNELNVLDLSKNYLLGKIPDEICRLSKLQDLLLNNNDFEGNLPLKIGNLSSLVNFLVSDNSISGEIPKSIGMLKNLFLFKAGGNKLLEGVLPWEIGNCSSLTVLGLSDTGIYGPLPSSIGMLQKIQIIHIYRSQLYDPLPEEITNCSELQTLRLYQNGISGPIPRRIGEMKKLKVLLLWLNLMEGEIPEEIANCTELVLFDFSENSLTGPIPKSLVRLQKLEDIELSLNQLSGTLPPEIFNISTLVHLEIDNNNFSGEIPDNIGNLKNLRTLLLWENKLTGTIPITLPDCPYLIMIDLSLNHLTGPIPTRIFALKELQKLLLLSNNLSGIIPPEVGNCTTLSRLRLSNNKLGGTIPSEMGNLMNLELLDLGRNHFVGGFPSSFSKCNKLDSLDLRSNRLTSLPNTLPKSLVYFNVSNNRLKGQLNPNIGELMDLTKLDLKNNQLSGKIPAEIVSCEKIQFLDLSNNFFSGELPKQLGTFASLEISLNLSYNQFSGQIPFEFSGLTKLSILDLSHNNFSGELSFLAQLENLVTLNISYNHFSGKLPDTPFFHKLPESAIIGNTDLLHSDGGDNPNDNRESSNISKDVIHIAMPILISISGVLFFLGFYMLIRSHMARFILFTEGNKWEITLFQKLDFSIDHMIRNLTASNVIGTGSSGAVYRITTPNGETMAVKKMWSTDETEAFNTEIQTLGSIRHKNIIRLLGWGSNRNLKLLFYDYVPNGNLSSLIHGPEKGEAEWEVRYEVLLGVAHALAYLHHDCIPPILHGDVKTMNILLGHDFEPYLADFGIAKIVSTKSDNDNTETPLLRPQLAGSFGYMAPGMFISLPFSKPIFRFWQINSMDSKLSVFLMITENGSMMRVTEKSDVYSFGVVIMEVLTGRHPLDPTLPGEANLVQWVQDHFATHQNTADIFDSKLRGRTDPTIHEMIQTLAVALICASVKADERPPMKDVVTMLEEIRHVELRRATNRRQEAGNGGSSIAAVAEISVPKDLSRN 1116
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 23838350 23841700 - Lsi02G018030.1 Lsi02g01803 656545
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi02g01803 1116 SUPERFAMILY L domain-like 34 305 - -
Lsi02g01803 1116 SMART LRR_typ_2 341 365 IPR003591 -
Lsi02g01803 1116 SMART LRR_typ_2 650 674 IPR003591 -
Lsi02g01803 1116 SMART LRR_typ_2 627 648 IPR003591 -
Lsi02g01803 1116 SMART LRR_typ_2 554 578 IPR003591 -
Lsi02g01803 1116 SMART LRR_typ_2 437 461 IPR003591 -
Lsi02g01803 1116 SMART LRR_typ_2 389 413 IPR003591 -
Lsi02g01803 1116 SMART LRR_typ_2 509 532 IPR003591 -
Lsi02g01803 1116 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 13 943 - -
Lsi02g01803 1116 SMART serkin_6 768 1076 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi02g01803 1116 Pfam Leucine rich repeat N-terminal domain 35 74 IPR013210 -
Lsi02g01803 1116 Gene3D Ribonuclease Inhibitor 33 182 IPR032675 -
Lsi02g01803 1116 Gene3D Ribonuclease Inhibitor 530 607 IPR032675 -
Lsi02g01803 1116 Gene3D Ribonuclease Inhibitor 433 529 IPR032675 -
Lsi02g01803 1116 Gene3D Ribonuclease Inhibitor 608 692 IPR032675 -
Lsi02g01803 1116 ProSiteProfiles Protein kinase domain profile. 768 1084 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi02g01803 1116 Gene3D Transferase(Phosphotransferase) domain 1 842 1099 - -
Lsi02g01803 1116 ProSitePatterns Protein kinases ATP-binding region signature. 774 797 IPR017441 GO:0005524
Lsi02g01803 1116 SUPERFAMILY RNI-like 275 661 - -
Lsi02g01803 1116 Gene3D Ribonuclease Inhibitor 183 432 IPR032675 -
Lsi02g01803 1116 Pfam Protein kinase domain 771 944 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi02g01803 1116 ProSiteProfiles Leucine-rich repeat profile. 511 532 IPR001611 GO:0005515
Lsi02g01803 1116 Pfam Protein tyrosine and serine/threonine kinase 962 1076 IPR001245 GO:0004672|GO:0006468
Lsi02g01803 1116 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 972 1090 - -
Lsi02g01803 1116 SUPERFAMILY Protein kinase-like (PK-like) 759 1078 IPR011009 -
Lsi02g01803 1116 Gene3D Phosphorylase Kinase; domain 1 747 841 - -
Lsi02g01803 1116 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE 972 1090 - -
Lsi02g01803 1116 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE 13 943 - -
Lsi02g01803 1116 ProSitePatterns Serine/Threonine protein kinases active-site signature. 886 898 IPR008271 GO:0004672|GO:0006468
Lsi02g01803 1116 Pfam Leucine rich repeat 391 450 IPR001611 GO:0005515
Lsi02g01803 1116 Pfam Leucine rich repeat 463 522 IPR001611 GO:0005515
Lsi02g01803 1116 Pfam Leucine rich repeat 103 161 IPR001611 GO:0005515
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g01803 Lsi-Chr2:23838350 Lsi05g01810 Lsi-Chr5:25345800 0 dispersed
Lsi02g01803 Lsi-Chr2:23838350 Lsi02g00394 Lsi-Chr2:3349308 0 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
83412 PF00069 Pkinase 5.00E-27 CL0016 Lsi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi02g01803 - - csv:101221377 1671.75