Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi02g01808 TACGGATATTCGAACTTACAACCTAAGACCCAATTGGCGCAAGTGAACCATAAATCAACGCCGTCTCAATCTTCGGTCGCAGAATCGCCAACTTCGCCAAGGCCAAGGATTTCACAGATTCAATCCACCGGATCCCTAAAATTCATCCTTCAATCCAGTGCTTCTCTTCACTTTCTTCTTCTTCTTGCTATGGGGAAGAGAAGAGAGCGTCGCCTCGCAGCTCTCAGTAACGCCGGTCGCCGTGTCAAGCTTGATCTTTTCGCCGAGCCCTCTGGAGATTTAGATGGCTCTGATGTACATGAAGAAGTTGGAGGGGATATAGATTCAAGACAGATGACCGAGTTACCTAAATCAGCATCCTCTTCAGTCTATAGGGTGACTGTGGTCTTTGGGACACCAATTATCAGATCTGGTCGGGGCCCCTGCCACAATGAACATGTGAATGACCCTCAATCATTATGCCCTTTTTGGTATCATCAAGGCATTTTGGAGATTTCGACAGGGAAAATTTTTCATCGGGAATTCTTTGACGTGCTGCTAAGAGATATGGTTTTGGATATATTTGATGTGAAAGTGTTTTTATTTTCAGGTCACCAAGCACAAAACCCCTTGCTGTTACTTGAGCAATATAGTGATGATGAAGTTGATGAGGACTTGAATAAAAATTCGGATCACGATGGACAAGATGATCTATTACCTGAGCGCAATGATGAGGCTGCTGTGGTCCCTACTGAGGGATGTGAGAAAATGGATACAAATGTCAGTGAAGACCTTATTGCTGAAAAGGCTGTTCAAGAGGAATCAGAGCGAGGTTCTGTTGAATTTTCTGAGAACCTGGAGAGCAAAGACGAAGCAAAAACTGACACTAATAGCTTGGGATATTTAAGCAAGGAAAGTGATCTGGTTCAAACATCTGTACCAGCAACATCTAATGTAGACTCAGGGGATGTTATTTCAGGATGGCGGATTGTTATGCATGAGGAGAGCCATAATTATTACTACTGGAATGTTGAAACTGGGGAAACTTCATGGGAAGTACCTGGAGTTGTTTTGGCTCAGGCTCAGCCTACTCAATCAACCACTGATATTAAAACTTCTCCTACTCAATTTCCAGAGAACGTTACAGTATTTAAACAGGAATCTGGCTTAGCCAATGGTGGGAAGTTAGATGCTTTTTCAGCAGAAAGCACAGGTGAGCATCTGCCTAAAGTGAATAATCAAATTGAAGGTTACAAGAATGGTGTTCCGGTAGCTGCAAGTCAGGGTTCTGAGGTTGACCAAAGCTATGCTGCCTTCAGTACCTGTTCAAATGATGTGAATATAACAAAAGCTGCTTCTGAGATCTATGTTGACACGGTGACTAATGTAGAACTGAAATCAGGGTTGGATCTTCCTTCGCATCTTCTGAACTGGAGTGCGACTTTGTTTGAGAGATTGAAATCATTACAGAAGTCTGGAGGTCATGAATGGACATCTAAGTACATATTGGAAACTCAGGTTAGACTTTCAGATTTGATGTCACTGATGCCCTATAAGACATCGTTGCTTCCATTTTGGGAACACTCGGCAAGAAAGCTTAAACAGATTGAAGATGAAGTTAACAAAGAAATTTATCAAACTGCTGCTGTATCATCCCAATTGGATGAAGCCAAGGCTACTGATAGTCCAAAGATTGTAAGAGAGGAGAAATTTCAGGAGAGGTCGAACGTGGAGTCTGAAGTAGAGAGAGTGGCAAATAGTGGTGTCTCTGCTTTGGAGCATTCCCATTTGCCTACTGATTCTGCCTCTTTGGCACTCCAGGGGGATCAAAGCCAAGTAACTATCATTGCAAATGGAGAAAATATTTCGTCTAAAGCAATTGAACAGTTGGGAAACTCTACTGGTGTGATTGAGCATGTAAATGAAGTTGCAACTGACGAAATGGCTTCCAAGAGTGGTGTACATTCTGGGGAAGATGTTGACATGGAGGTGGATATGGAAGTTGAAGATGCCAGTTCTGCGGGTAACTTGACGGTGGCTGGTACGTCAGATATGTACGTTGCTACTTTTTTGGAGCAACCTCTTCAGCCAGATCCACAAACCCAGCCAACTCTTTCCTCTGGATATGGATACATGGTGTCAGAGGATGGCTCTGTAGCACCACCGCCACCACCGGATGAGGAATGGATTCCCCCACCACCACCTGATAATGAAGATGTTCCTCCACCCCCACCTGATGAGCCAGCTGAGCCATTATATCCTATGCCTCCATCTTATACCCAACTTGGGCAGCCTCTTTGTTACACCGAACCGTATCAAGTGTCCTACCCTGATTCTAGTATTAAGTATTATGCACATCCTGTCCCTGAAGTCGTCCCTAGTGCAGACTTTTATGGACATCCAGAAGCATGTAACGTTGTTTTGGCCCAAGCACCATTTTACTATGAGGCAGTTCCCAATTCGCACACTGAATCTGCTTCTATAGTTGTAAATGGTGTTGTGCCTGAAGGTTATGGTATTCTTCAAGATGCAACAACCACTCTTCCCCTATTTAGTACAACAGAGACTTCTCAGTTGCATGTTGATTCCTCATCTGCGAGATTTGATCCTTCCTCTATTCAATATGGATCTTCTGACGCAGCAAATGTGAATACTGCTTCTGCTGCTGATGAAATTGACAAGAGACGTGGAGAGACCACAACAGCCTCCTTCCGAGCATCTACTTCAGGCTCCCCAACTAATGATGTTCCACCAACAAGTAAAGCTGTTACTGATTCTTTGTCTGTTGTTAATACATCCACAGTCTCCAAGGTTCAACCAAAAGCTCTGCGCAGCAAAAAGCGGACAGTGACAGTTGCTCCCTCCTTGAGATCAAATAAGAAAGTTTCGAGTATGTTGGACAAGTGGAAGGCAGCAAAAGAAGAACTGGAAGATGAGGAGGAACCAGAAAATGCTTATGAGATTCTAGAGAGGAAACGAGAAAGGGAAATAAAGGGGCTACAGTCCACTGCATCTGAGCTCGGGGAATGGCATGCACAGCAGATTGCCAGTGGGGATGCAAAAGAAAACGCCAACTTTCAGCCTCTTGGGGGTGATTGGTATGCAGCTCAAATTTACATTTTCTTTCCTTTATCCAAACTTCATTCGTCTTTTAAAACCATCATATTCTCACCATCCCTTTTGCACTCTGCCTCTTCACGATTCAAGGGCTTTTTTGGACTTCACCGTTCTAAGCGCGAGCGGGTAAAGCGAAGGAGAGCTCAATCATCAGGTGAAGTTACTCAATCCCCTTCAGCATCCACAGATGGAAACCAACAACCTGACCTGACAGAAATCTCAAAAGATCTCCCCTCAGGATGGCAGGTAAATTCCATTATACAAATGATGATAAACTGTAATTACAAGTTAGAATGGAACGTGGCCATTGAGTCCCTCAAACAGATACTAATCTTGGTTTTCTCTTTGGACCATCACATTTTACAGGCATATTGGGATGAGTCATCGAAACAAGTGTATTATGGCAATGTTAACACCTCAGAAACGTCGTGGACTAAGCCGAGCAAG 3543 43.75 YGYSNLQPKTQLAQVNHKSTPSQSSVAESPTSPRPRISQIQSTGSLKFILQSSASLHFLLLLAMGKRRERRLAALSNAGRRVKLDLFAEPSGDLDGSDVHEEVGGDIDSRQMTELPKSASSSVYRVTVVFGTPIIRSGRGPCHNEHVNDPQSLCPFWYHQGILEISTGKIFHREFFDVLLRDMVLDIFDVKVFLFSGHQAQNPLLLLEQYSDDEVDEDLNKNSDHDGQDDLLPERNDEAAVVPTEGCEKMDTNVSEDLIAEKAVQEESERGSVEFSENLESKDEAKTDTNSLGYLSKESDLVQTSVPATSNVDSGDVISGWRIVMHEESHNYYYWNVETGETSWEVPGVVLAQAQPTQSTTDIKTSPTQFPENVTVFKQESGLANGGKLDAFSAESTGEHLPKVNNQIEGYKNGVPVAASQGSEVDQSYAAFSTCSNDVNITKAASEIYVDTVTNVELKSGLDLPSHLLNWSATLFERLKSLQKSGGHEWTSKYILETQVRLSDLMSLMPYKTSLLPFWEHSARKLKQIEDEVNKEIYQTAAVSSQLDEAKATDSPKIVREEKFQERSNVESEVERVANSGVSALEHSHLPTDSASLALQGDQSQVTIIANGENISSKAIEQLGNSTGVIEHVNEVATDEMASKSGVHSGEDVDMEVDMEVEDASSAGNLTVAGTSDMYVATFLEQPLQPDPQTQPTLSSGYGYMVSEDGSVAPPPPPDEEWIPPPPPDNEDVPPPPPDEPAEPLYPMPPSYTQLGQPLCYTEPYQVSYPDSSIKYYAHPVPEVVPSADFYGHPEACNVVLAQAPFYYEAVPNSHTESASIVVNGVVPEGYGILQDATTTLPLFSTTETSQLHVDSSSARFDPSSIQYGSSDAANVNTASAADEIDKRRGETTTASFRASTSGSPTNDVPPTSKAVTDSLSVVNTSTVSKVQPKALRSKKRTVTVAPSLRSNKKVSSMLDKWKAAKEELEDEEEPENAYEILERKREREIKGLQSTASELGEWHAQQIASGDAKENANFQPLGGDWYAAQIYIFFPLSKLHSSFKTIIFSPSLLHSASSRFKGFFGLHRSKRERVKRRRAQSSGEVTQSPSASTDGNQQPDLTEISKDLPSGWQVNSIIQMMINCNYKLEWNVAIESLKQILILVFSLDHHILQAYWDESSKQVYYGNVNTSETSWTKPSK 1181
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 23875347 23882702 + Lsi02G018080.1 Lsi02g01808 656550

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi02g01808 1181 MobiDBLite consensus disorder prediction 877 918 - -
Lsi02g01808 1181 Gene3D - 314 358 - -
Lsi02g01808 1181 SUPERFAMILY WW domain 312 348 IPR036020 GO:0005515
Lsi02g01808 1181 MobiDBLite consensus disorder prediction 216 236 - -
Lsi02g01808 1181 ProSiteProfiles WW/rsp5/WWP domain profile. 315 349 IPR001202 GO:0005515
Lsi02g01808 1181 SMART ww_5 1152 1181 IPR001202 GO:0005515
Lsi02g01808 1181 SMART ww_5 316 349 IPR001202 GO:0005515
Lsi02g01808 1181 MobiDBLite consensus disorder prediction 686 745 - -
Lsi02g01808 1181 MobiDBLite consensus disorder prediction 1 38 - -
Lsi02g01808 1181 CDD WW 319 347 IPR001202 GO:0005515
Lsi02g01808 1181 ProSitePatterns WW/rsp5/WWP domain signature. 321 347 IPR001202 GO:0005515
Lsi02g01808 1181 MobiDBLite consensus disorder prediction 1082 1103 - -
Lsi02g01808 1181 CDD WW 1154 1179 IPR001202 GO:0005515
Lsi02g01808 1181 MobiDBLite consensus disorder prediction 687 704 - -
Lsi02g01808 1181 PANTHER OS06G0298400 PROTEIN 1072 1181 - -
Lsi02g01808 1181 PANTHER OS06G0298400 PROTEIN 64 1026 - -
Lsi02g01808 1181 Coils Coil 952 972 - -
Lsi02g01808 1181 Pfam WW domain 319 347 IPR001202 GO:0005515
Lsi02g01808 1181 MobiDBLite consensus disorder prediction 265 287 - -
Lsi02g01808 1181 MobiDBLite consensus disorder prediction 265 292 - -
Lsi02g01808 1181 MobiDBLite consensus disorder prediction 894 918 - -
Lsi02g01808 1181 MobiDBLite consensus disorder prediction 1072 1103 - -
Lsi02g01808 1181 MobiDBLite consensus disorder prediction 711 745 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi02g01808 K24774 FNBP4; formin-binding protein 4 - csv:101219916 1326.23
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g719 . . Bda07g00423 Bda09g00442 . . . . . . Cma01g01060 Cma09g01029 Car01g00934 Car09g00932 Sed04g3626 Cpe06g00836 Cpe02g00836 Bhi09g01804 Tan01g3218 Cmetu01g2692 . . Mch11g1304 . . . . . . . . . . . . Lsi02g01808 . . . . . . . Bpe11g00598 . . Bma14g00671 . Cmo01g01101 Cmo09g01031 . . . . . . . . . . . . . Cla09g02097 Cam09g2183 Cec09g2250 . . . . . . Chy01g01120 Cme01g00868
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004218 2 2 0 1 1 1 2 1 1 1 1 1 2 1 1 2 1 3 2 1 1 1 1 1 1 1 1 3 4 1 42
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi02g01808 Lsi_Chr02 FPKM 0.0 0.0 2.563417 4.440912 0.0 0.0 0.0 1.413403 2.467571 1.871581