Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi02g01811 ATGATTCATTCTGGTTTCTTCCTTTCGGGACCGTCGTTTAATTCTGATGCTACTACATCTTTCATATCAATTCCGGTGTCTGGAGAAGATGGCGCTACTGCTGATGATATCAGAAACCATACCTCTGATTCCGCCCCCCCTTCTTTTTGGGTTAGAATGGCGATGAAAATATCTAGAGCTAGATGGTTTATTTTCTTGAGAAGAGTTTTCCACTACCAAAACGGATCGAGATCTGATCTTGGGCCGAATCCTTTCAATTCGGGTTCGTGGATGGCAATGGAACTTGTAGCTCTGTTGTTTCAGCTAATTATTTCAGCATTTACTCTTGCCATTTCACAGGCTGAGAGGCCAGTTTGGCCTATGAGATTGTGGATAGGTGGTTATGATCTTGGCTGTGTTCTTAGCTTATTGCTTCTCTACGGCCGCCATCGGTATCATTATCTAATGCAGGGAGATGGTAACAGTCTTTCAGATATCGAACACGAACAGCAGAGGAGCAATGAATCATCAAGGTACTCACATTTGATGAACAAATGCCGCACATCTCTTGATCTTTTCTTTGCAATATGGTTTGTAATGGGCAATCTTTGGGCCTTCGATTCTCGCTTAGCCTCGTACCAGAAAGCTCCCAAGCTACATCTTCTATGCAGCTTCCTGCTAGTTTGGAATGCCATCTGCTACTCTTTCCCATTTATTCTGTTTCTGCTGCTATGTTGCTGTGTGCCATTGATTAGTAGCCTTATAGGGTATAACATTAACATGGGATCAACCGAAAAAGGGGCATTAGATGATCAAATTTCCCAGCTACCTTGCTGGAGATACCAAGCGGTTGAAGCCAACATCAACCCCGGAAGTCAACCCGATAATAGCAATACAGGACTTCTAAAAGAGGATCCAGAATGTTGCATTTGCCTTGCCAAGTATATAGACAAGGAAGAAGTGAGACAGTTGCCTTGTTCCCATGTATTTCATCTCAAGTGTGTAGATAAGTGGCTTGCTATTACATCTTCATGCCCTCTCTATAAGGAAAGGTTGTTTTCAATGATCAATTCTGGTTATTTCGTTTCGGGGCCGTCGTGTAACTGCAGTGCCACTGGTTCCTTTATCTCAAATTCATTGGTGGAAGAAGATGGTGTGGGTGCGGATGTTAGAGATGACAATTCTGTTGCTCTCCCTGCATCTTTCTGGGTTAGGATAGCGATGAGAGTATCTAGAGCCAGGTGGTTCATTTTCTTACGAAGGGTATTTCACTACCAGAACGGATCAAGATCAGATCTCGGGTCTGATCCTTTCAATTCTAGCTCGTGGATGGCTATGGAGCTGGTAGCTATGGTGTTTCAGCTGGCCATCACAGTGTTTTTTCTTGCCATTTCAGAGACGGAGAAGCCAGTTTGGCCTATGAGACTGTGGATAGTTGGTTATGATCTTGGCTGCACTCTTAGTTTGTTGCTTCTCTACGGGCGATATTGGCATCTTTATTTAATGCGTGGAGAGCATGTCAGCCTTTCTGAGACTGAGCAGCGGAGGAGCAGTCAAGCATCAAGGAGCTTGCATTTGATGAACAAATGCCGGTCATCTCTTGAACTTTTCTTTGCAATATGGTTCGTAATGGGTAATGTTTGGATCGTCGATTCTCGCTTCAGTTCTTTCCAAAGAGCTCCCAAGCTTCATCTGCTATGTGTCTTCTTATTAGTTTGGAATGCCATCTGCTACTCCTTTCCATTCATTCTTTTTCTACTGCTTTGTTGCTGTGTGCCATTGGTTAGTAGCCTTCTAGGATATAACATTAACATGGCGTCAACCGACAAAGGAGCATCGGATGATCAAATATCCGAGCTACCGTGCTGGAGATATAAAGTGAGCTCAATGCAACCTGGTAGTAAAAAAGGACTTCCAAAAGAGGATCCACGAATACTATTTTGTCGTGTGGTTGCAAGTAATTGTCAAATCTTATCCCTACCAACTGTCAACAATGTCTTATTCTCAAAGTCCAAATTCTTGGAGGTTTACTCATTGTTGAAATCCGAGCTCCTTCACGACCCTGCTTTCGAGTTCACTGACGATTCTCGCCAATGGGTCGACCGGATGCTGGATTACAATGTACCTGGAGGAAAGTTGAACAGAGGTCTCTCTGTCGTTGATAGCTACAAGTTACTAAAACAAGGGGAAAAGTTAACTGAAGATGAAGTGTTTCTGGCTTCTGCACTTGGTTGGTGCATTGAATGGCTTCAAGCATATTTCCTTGTTCTTGACGATATCATGGATAATTCTGTTACACGACGTGGACAACCTTGCTGGTTCAGGGTACCAAAGGTTGGAATGGTTGCTGTAAATGATGGCATATTGTTACGAAACCATATCCCGAGAATCCTCAAGAATCATTTCAGAGAAAAGCCTTATTATGTGGATCTTTTGGAGTTGTTTAATGAGGTAGAATTTCAAACAGCCTCAGGACAGATGATAGATTTAATTACCACACTAGAAGGAGAGAAAGATCTATCAAAGTACTCATTACCTCTTCATCATCGCATTGTTCAGTACAAAACTGCATACTACTCGTTCTACCTTCCGGTTGCATGTGCATTACTAATGGCAGGTGAAAATTTGGACAATCATAATGATGTCAAGAACATTCTCATTGATATGGGAACCTATTTCCAAGTGCAGGATGATTATCTGGATTGTTTTGGTCATCCTGATGTGATAGGGAAGATTGGAACAGATATTGAAGATTTCAAATGCTCTTGGTTGGTTGTGAAAGCACTAGAACTAAGTGATGGGAAACAGAGGACTTTGCTACATGAGAACTATGGGAAAGCAGATAAGGATTGTGTTGCCAAAGTGAAAGAGTTATATAAAGCCCTCAATCTAGAGGGCGTATTTGCCGAGTACGAGAGCAAAAGTTACGAGAAGCTTCTAAAATCCATAGAAATTCATCCAAGTGGTGCAGTACAAGCAGTGTTGAAATCTTTCCTTGCAAAGATATACAAGAGGCAGAAATAG 3003 42.29 MIHSGFFLSGPSFNSDATTSFISIPVSGEDGATADDIRNHTSDSAPPSFWVRMAMKISRARWFIFLRRVFHYQNGSRSDLGPNPFNSGSWMAMELVALLFQLIISAFTLAISQAERPVWPMRLWIGGYDLGCVLSLLLLYGRHRYHYLMQGDGNSLSDIEHEQQRSNESSRYSHLMNKCRTSLDLFFAIWFVMGNLWAFDSRLASYQKAPKLHLLCSFLLVWNAICYSFPFILFLLLCCCVPLISSLIGYNINMGSTEKGALDDQISQLPCWRYQAVEANINPGSQPDNSNTGLLKEDPECCICLAKYIDKEEVRQLPCSHVFHLKCVDKWLAITSSCPLYKERLFSMINSGYFVSGPSCNCSATGSFISNSLVEEDGVGADVRDDNSVALPASFWVRIAMRVSRARWFIFLRRVFHYQNGSRSDLGSDPFNSSSWMAMELVAMVFQLAITVFFLAISETEKPVWPMRLWIVGYDLGCTLSLLLLYGRYWHLYLMRGEHVSLSETEQRRSSQASRSLHLMNKCRSSLELFFAIWFVMGNVWIVDSRFSSFQRAPKLHLLCVFLLVWNAICYSFPFILFLLLCCCVPLVSSLLGYNINMASTDKGASDDQISELPCWRYKVSSMQPGSKKGLPKEDPRILFCRVVASNCQILSLPTVNNVLFSKSKFLEVYSLLKSELLHDPAFEFTDDSRQWVDRMLDYNVPGGKLNRGLSVVDSYKLLKQGEKLTEDEVFLASALGWCIEWLQAYFLVLDDIMDNSVTRRGQPCWFRVPKVGMVAVNDGILLRNHIPRILKNHFREKPYYVDLLELFNEVEFQTASGQMIDLITTLEGEKDLSKYSLPLHHRIVQYKTAYYSFYLPVACALLMAGENLDNHNDVKNILIDMGTYFQVQDDYLDCFGHPDVIGKIGTDIEDFKCSWLVVKALELSDGKQRTLLHENYGKADKDCVAKVKELYKALNLEGVFAEYESKSYEKLLKSIEIHPSGAVQAVLKSFLAKIYKRQK 1000
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 23889611 23904650 - Lsi02G018110.1 Lsi02g01811 656553

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi02g01811 1000 ProSitePatterns Polyprenyl synthases signature 1. 748 762 IPR033749 -
Lsi02g01811 1000 Gene3D Farnesyl Diphosphate Synthase 656 999 IPR008949 -
Lsi02g01811 1000 SFLD Polyprenyl Transferase Like 690 998 - -
Lsi02g01811 1000 SMART ring_2 301 341 IPR001841 -
Lsi02g01811 1000 PANTHER C3H4 TYPE ZINC FINGER PROTEIN 33 344 - -
Lsi02g01811 1000 PANTHER C3H4 TYPE ZINC FINGER PROTEIN 372 641 - -
Lsi02g01811 1000 ProSitePatterns Polyprenyl synthases signature 2. 882 894 IPR033749 -
Lsi02g01811 1000 ProSiteProfiles Zinc finger RING-type profile. 301 342 IPR001841 -
Lsi02g01811 1000 SFLD Isoprenoid Synthase Type I 690 998 - -
Lsi02g01811 1000 SUPERFAMILY Terpenoid synthases 666 999 IPR008949 -
Lsi02g01811 1000 CDD Trans_IPPS_HT 688 998 IPR000092 GO:0008299
Lsi02g01811 1000 Pfam Polyprenyl synthetase 691 954 IPR000092 GO:0008299
Lsi02g01811 1000 Pfam Ring finger domain 300 340 IPR001841 -
Lsi02g01811 1000 SUPERFAMILY RING/U-box 294 340 - -
Lsi02g01811 1000 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 33 344 - -
Lsi02g01811 1000 CDD RING-H2_RNF111_like 299 340 - -
Lsi02g01811 1000 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 372 641 - -
Lsi02g01811 1000 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 251 346 IPR013083 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi02g01811 K00787 FDPS; farnesyl diphosphate synthase [EC:2.5.1.1 2.5.1.10] - csv:101217388 652.514
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g01180 Lsi-Chr2:14654565 Lsi02g01811 Lsi-Chr2:23889611 0 dispersed
Lsi02g01811 Lsi-Chr2:23889611 Lsi08g01150 Lsi-Chr8:20129694 1.07E-09 dispersed
Lsi02g01811 Lsi-Chr2:23889611 Lsi01g01744 Lsi-Chr1:16245384 5.90E-14 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g714 Blo03g00497 . Bda07g00422 . . . . Bma13g01130 . . Cma01g01063 Cma09g01026 Car01g00937 Car09g00929 Sed07g2752 Cpe06g00833 Cpe02g00834 Bhi09g01797 Tan01g3212 Cmetu01g0145 . . Mch11g1300 . . . . . . . . . . . . Lsi02g01811 . . . . . . Bda12g00980 Bpe11g00597 . . Bma14g00672 . Cmo01g01104 Cmo09g01028 . . . Car16g00969 . . . . . . . . . Cla09g02094 Cam09g2180 Cec09g2247 . . . . . . Chy01g01124 Cme01g00873
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lsi11g00931 . 82 598 C3H Transcription Factor Family AT2G31510 72.6 2.1e-225 778.5
Lsi08g00360 . 86 512 C3H Transcription Factor Family AT2G31510 79.9 7.3e-215 743.4
Lsi11g00931 . 51 572 C3H Transcription Factor Family AT2G31770 53.1 9.4e-163 570.5
Lsi08g00360 . 17 505 C3H Transcription Factor Family AT2G31770 53.8 2.1e-154 542.7
Lsi11g00931 . 65 557 C3H Transcription Factor Family AT2G31760 54.7 1.2e-162 570.1
Lsi08g00360 . 74 512 C3H Transcription Factor Family AT2G31760 57.8 7.6e-154 540.8
Lsi01g01180 . 8 170 C3H Transcription Factor Family AT5G06490 53.6 6.9e-47 184.1
Lsi01g01180 . 8 170 C3H Transcription Factor Family AT5G06490 53.6 6.9e-47 184.1
Lsi03g00188 . 81 300 C3H Transcription Factor Family AT3G02290 62.7 1.3e-73 273.1
Lsi06g00932 . 2 324 C3H Transcription Factor Family AT1G11020 70.4 6.2e-130 460.7
Lsi07g00675 . 62 221 C3H Transcription Factor Family AT1G50440 75.6 3.8e-68 255.0
Lsi01g01995 . 2 324 C3H Transcription Factor Family AT5G08750 59.2 7.6e-100 360.9
Lsi03g00937 . 1 482 C3H Transcription Factor Family AT3G16090 63.4 2.8e-161 565.5
Lsi03g00188 . 77 300 C3H Transcription Factor Family AT5G38895 56.0 3.4e-70 262.3
Lsi08g01421 . 16 227 C3H Transcription Factor Family AT1G19310 67.0 1.8e-78 289.3
Lsi01g01051 . 16 225 C3H Transcription Factor Family AT1G19310 61.2 1.3e-70 263.1
Lsi01g00729 . 9 315 C3H Transcription Factor Family AT2G22120 66.8 3.4e-116 415.2
Lsi08g00926 . 33 165 C3H Transcription Factor Family AT5G07040 61.8 9.9e-44 173.3
Lsi06g01347 . 1 403 C3H Transcription Factor Family AT1G18470 71.2 4.8e-170 594.3
Lsi11g00931 . 51 572 C3H Transcription Factor Family AT2G31770 53.1 9.4e-163 570.5
Lsi08g00360 . 17 505 C3H Transcription Factor Family AT2G31770 53.8 2.1e-154 542.7
Lsi11g00931 . 65 557 C3H Transcription Factor Family AT2G31760 54.7 1.2e-162 570.1
Lsi08g00360 . 74 512 C3H Transcription Factor Family AT2G31760 57.8 7.6e-154 540.8
Lsi02g01811 . 43 278 C3H Transcription Factor Family AT5G55970 67.4 1.7e-95 346.3
Lsi01g01995 . 2 324 C3H Transcription Factor Family AT5G63780 55.6 1.4e-96 350.1
Lsi03g01745 . 1 427 C3H Transcription Factor Family AT3G58030 51.9 6.8e-103 371.3
Lsi02g01811 . 36 345 C3H Transcription Factor Family AT4G26580 61.5 2.1e-112 402.5
Lsi01g01637 . 11 446 C3H Transcription Factor Family AT5G01960 66.4 1.4e-148 523.1
Lsi11g01333 . 69 210 C3H Transcription Factor Family AT2G04240 56.5 5.4e-37 151.0
Lsi10g01089 . 1 242 C3H Transcription Factor Family AT5G19430 51.8 1.3e-61 233.4
Lsi07g00769 . 130 585 C3H Transcription Factor Family AT5G45290 52.3 4.2e-102 369.0
Lsi10g01089 . 40 242 C3H Transcription Factor Family AT5G12310 56.4 1.5e-57 219.9
Lsi06g01233 CCT 138 430 C3H Transcription Factor Family AT5G05810 54.1 5.6e-75 278.5
Lsi03g00338 . 53 219 C3H Transcription Factor Family AT5G05830 64.7 3.7e-59 224.9
Lsi03g02162 CCT,ECH 70 231 C3H Transcription Factor Family AT5G05830 61.7 4.2e-55 211.5
Lsi01g01511 CCT,ECH 36 166 C3H Transcription Factor Family AT5G05830 58.8 6.5e-40 161.0
Lsi06g00828 CCT 70 457 C3H Transcription Factor Family AT4G28890 51.6 1.6e-96 350.1
Lsi03g00188 . 81 300 C3H Transcription Factor Family AT5G15790 59.7 7.3e-72 267.3
Lsi03g00367 . 40 311 C3H Transcription Factor Family AT3G55530 79.9 6.3e-115 410.6
Lsi02g02317 . 1 273 C3H Transcription Factor Family AT1G63900 76.3 3.1e-117 418.3
Lsi05g01907 . 10 393 C3H Transcription Factor Family AT2G44580 53.3 1.0e-118 423.7
Lsi08g01421 . 25 150 C3H Transcription Factor Family AT1G74990 59.1 5.7e-40 160.6
Lsi04g01367 . 404 677 C3H Transcription Factor Family AT5G20910 63.9 1.7e-95 346.3
Lsi03g00937 . 119 475 C3H Transcription Factor Family AT1G65040 57.4 3.5e-101 365.2
Lsi01g01051 . 17 227 C3H Transcription Factor Family AT2G23780 61.6 2.2e-73 272.3
Lsi08g01421 . 6 229 C3H Transcription Factor Family AT2G23780 56.5 8.2e-68 253.8
Lsi03g01619 CCT 1 317 C3H Transcription Factor Family AT3G10810 53.9 1.6e-79 293.9
Lsi01g01756 CCT 46 283 C3H Transcription Factor Family AT3G10810 60.7 1.0e-67 254.6
Lsi09g00235 . 1 170 C3H Transcription Factor Family AT1G63840 59.0 5.8e-47 184.1
Lsi09g01587 . 1 152 C3H Transcription Factor Family AT1G63840 50.9 4.1e-40 161.4
Lsi09g00690 . 17 353 C3H Transcription Factor Family AT1G68070 65.1 1.1e-119 426.8
Lsi07g01384 . 47 376 C3H Transcription Factor Family AT1G68070 50.5 1.7e-85 313.2
Lsi04g01830 . 4 182 C3H Transcription Factor Family AT1G76410 55.2 2.2e-50 195.7
Lsi07g01038 . 54 212 C3H Transcription Factor Family AT1G76410 55.7 8.0e-45 177.2
Lsi07g01038 . 54 203 C3H Transcription Factor Family AT2G17450 56.9 1.1e-38 156.8
Lsi11g00931 . 82 598 C3H Transcription Factor Family AT2G31510 72.6 2.1e-225 778.5
Lsi08g00360 . 86 512 C3H Transcription Factor Family AT2G31510 79.9 7.3e-215 743.4
Lsi01g01180 . 7 169 C3H Transcription Factor Family AT2G35910 61.2 5.5e-53 204.5
Lsi03g01806 . 15 161 C3H Transcription Factor Family AT2G35910 54.2 4.3e-42 168.3
Lsi05g00102 . 61 318 C3H Transcription Factor Family AT2G41980 81.0 8.6e-129 456.8
Lsi05g00103 . 564 821 C3H Transcription Factor Family AT2G41980 80.2 3.3e-128 454.9
Lsi10g00990 . 27 323 C3H Transcription Factor Family AT2G41980 71.9 2.1e-127 452.2
Lsi09g01813 . 43 301 C3H Transcription Factor Family AT2G41980 75.7 1.8e-123 439.1
Lsi09g00815 . 959 1240 C3H Transcription Factor Family AT2G41980 69.9 3.2e-115 411.8
Lsi04g00034 . 106 343 C3H Transcription Factor Family AT2G41980 78.6 9.2e-115 410.2
Lsi01g01940 . 50 236 C3H Transcription Factor Family AT2G41980 85.0 2.4e-94 342.4
Lsi05g01456 . 123 397 C3H Transcription Factor Family AT3G06140 62.7 7.3e-95 344.4
Lsi03g02030 . 33 329 C3H Transcription Factor Family AT3G09770 59.4 1.2e-86 317.0
Lsi05g00445 . 123 613 C3H Transcription Factor Family AT3G26730 52.9 3.5e-144 509.2
Lsi02g00365 . 342 633 C3H Transcription Factor Family AT3G47990 70.2 6.5e-121 430.6
Lsi04g01830 . 4 183 C3H Transcription Factor Family AT1G20823 55.6 3.9e-50 194.9
Lsi07g01038 . 54 235 C3H Transcription Factor Family AT1G20823 51.3 1.5e-46 183.0
Lsi10g00332 . 4 395 C3H Transcription Factor Family AT3G18930 53.8 3.2e-86 315.8
Lsi07g01081 . 20 235 C3H Transcription Factor Family AT5G66070 74.5 4.0e-75 278.1
Lsi03g02071 . 41 310 C3H Transcription Factor Family AT5G02750 53.4 3.0e-67 252.3
Lsi06g01347 . 5 406 C3H Transcription Factor Family AT1G73950 64.4 6.5e-146 514.2
Lsi09g00690 . 15 251 C3H Transcription Factor Family AT2G01735 60.4 1.3e-74 276.6
Lsi07g01384 . 60 269 C3H Transcription Factor Family AT2G01735 52.8 2.7e-51 199.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002932 2 5 1 2 1 1 2 1 1 2 1 1 3 2 1 3 1 1 3 1 2 2 1 1 1 1 2 6 1 1 53
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi02g01811 Lsi_Chr02 FPKM 9.613868 12.352735 12.992272 12.372355 12.755609 16.158936 14.563776 20.448029 20.070185 22.27199