Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lsi02g01811 | ATGATTCATTCTGGTTTCTTCCTTTCGGGACCGTCGTTTAATTCTGATGCTACTACATCTTTCATATCAATTCCGGTGTCTGGAGAAGATGGCGCTACTGCTGATGATATCAGAAACCATACCTCTGATTCCGCCCCCCCTTCTTTTTGGGTTAGAATGGCGATGAAAATATCTAGAGCTAGATGGTTTATTTTCTTGAGAAGAGTTTTCCACTACCAAAACGGATCGAGATCTGATCTTGGGCCGAATCCTTTCAATTCGGGTTCGTGGATGGCAATGGAACTTGTAGCTCTGTTGTTTCAGCTAATTATTTCAGCATTTACTCTTGCCATTTCACAGGCTGAGAGGCCAGTTTGGCCTATGAGATTGTGGATAGGTGGTTATGATCTTGGCTGTGTTCTTAGCTTATTGCTTCTCTACGGCCGCCATCGGTATCATTATCTAATGCAGGGAGATGGTAACAGTCTTTCAGATATCGAACACGAACAGCAGAGGAGCAATGAATCATCAAGGTACTCACATTTGATGAACAAATGCCGCACATCTCTTGATCTTTTCTTTGCAATATGGTTTGTAATGGGCAATCTTTGGGCCTTCGATTCTCGCTTAGCCTCGTACCAGAAAGCTCCCAAGCTACATCTTCTATGCAGCTTCCTGCTAGTTTGGAATGCCATCTGCTACTCTTTCCCATTTATTCTGTTTCTGCTGCTATGTTGCTGTGTGCCATTGATTAGTAGCCTTATAGGGTATAACATTAACATGGGATCAACCGAAAAAGGGGCATTAGATGATCAAATTTCCCAGCTACCTTGCTGGAGATACCAAGCGGTTGAAGCCAACATCAACCCCGGAAGTCAACCCGATAATAGCAATACAGGACTTCTAAAAGAGGATCCAGAATGTTGCATTTGCCTTGCCAAGTATATAGACAAGGAAGAAGTGAGACAGTTGCCTTGTTCCCATGTATTTCATCTCAAGTGTGTAGATAAGTGGCTTGCTATTACATCTTCATGCCCTCTCTATAAGGAAAGGTTGTTTTCAATGATCAATTCTGGTTATTTCGTTTCGGGGCCGTCGTGTAACTGCAGTGCCACTGGTTCCTTTATCTCAAATTCATTGGTGGAAGAAGATGGTGTGGGTGCGGATGTTAGAGATGACAATTCTGTTGCTCTCCCTGCATCTTTCTGGGTTAGGATAGCGATGAGAGTATCTAGAGCCAGGTGGTTCATTTTCTTACGAAGGGTATTTCACTACCAGAACGGATCAAGATCAGATCTCGGGTCTGATCCTTTCAATTCTAGCTCGTGGATGGCTATGGAGCTGGTAGCTATGGTGTTTCAGCTGGCCATCACAGTGTTTTTTCTTGCCATTTCAGAGACGGAGAAGCCAGTTTGGCCTATGAGACTGTGGATAGTTGGTTATGATCTTGGCTGCACTCTTAGTTTGTTGCTTCTCTACGGGCGATATTGGCATCTTTATTTAATGCGTGGAGAGCATGTCAGCCTTTCTGAGACTGAGCAGCGGAGGAGCAGTCAAGCATCAAGGAGCTTGCATTTGATGAACAAATGCCGGTCATCTCTTGAACTTTTCTTTGCAATATGGTTCGTAATGGGTAATGTTTGGATCGTCGATTCTCGCTTCAGTTCTTTCCAAAGAGCTCCCAAGCTTCATCTGCTATGTGTCTTCTTATTAGTTTGGAATGCCATCTGCTACTCCTTTCCATTCATTCTTTTTCTACTGCTTTGTTGCTGTGTGCCATTGGTTAGTAGCCTTCTAGGATATAACATTAACATGGCGTCAACCGACAAAGGAGCATCGGATGATCAAATATCCGAGCTACCGTGCTGGAGATATAAAGTGAGCTCAATGCAACCTGGTAGTAAAAAAGGACTTCCAAAAGAGGATCCACGAATACTATTTTGTCGTGTGGTTGCAAGTAATTGTCAAATCTTATCCCTACCAACTGTCAACAATGTCTTATTCTCAAAGTCCAAATTCTTGGAGGTTTACTCATTGTTGAAATCCGAGCTCCTTCACGACCCTGCTTTCGAGTTCACTGACGATTCTCGCCAATGGGTCGACCGGATGCTGGATTACAATGTACCTGGAGGAAAGTTGAACAGAGGTCTCTCTGTCGTTGATAGCTACAAGTTACTAAAACAAGGGGAAAAGTTAACTGAAGATGAAGTGTTTCTGGCTTCTGCACTTGGTTGGTGCATTGAATGGCTTCAAGCATATTTCCTTGTTCTTGACGATATCATGGATAATTCTGTTACACGACGTGGACAACCTTGCTGGTTCAGGGTACCAAAGGTTGGAATGGTTGCTGTAAATGATGGCATATTGTTACGAAACCATATCCCGAGAATCCTCAAGAATCATTTCAGAGAAAAGCCTTATTATGTGGATCTTTTGGAGTTGTTTAATGAGGTAGAATTTCAAACAGCCTCAGGACAGATGATAGATTTAATTACCACACTAGAAGGAGAGAAAGATCTATCAAAGTACTCATTACCTCTTCATCATCGCATTGTTCAGTACAAAACTGCATACTACTCGTTCTACCTTCCGGTTGCATGTGCATTACTAATGGCAGGTGAAAATTTGGACAATCATAATGATGTCAAGAACATTCTCATTGATATGGGAACCTATTTCCAAGTGCAGGATGATTATCTGGATTGTTTTGGTCATCCTGATGTGATAGGGAAGATTGGAACAGATATTGAAGATTTCAAATGCTCTTGGTTGGTTGTGAAAGCACTAGAACTAAGTGATGGGAAACAGAGGACTTTGCTACATGAGAACTATGGGAAAGCAGATAAGGATTGTGTTGCCAAAGTGAAAGAGTTATATAAAGCCCTCAATCTAGAGGGCGTATTTGCCGAGTACGAGAGCAAAAGTTACGAGAAGCTTCTAAAATCCATAGAAATTCATCCAAGTGGTGCAGTACAAGCAGTGTTGAAATCTTTCCTTGCAAAGATATACAAGAGGCAGAAATAG | 3003 | 42.29 | MIHSGFFLSGPSFNSDATTSFISIPVSGEDGATADDIRNHTSDSAPPSFWVRMAMKISRARWFIFLRRVFHYQNGSRSDLGPNPFNSGSWMAMELVALLFQLIISAFTLAISQAERPVWPMRLWIGGYDLGCVLSLLLLYGRHRYHYLMQGDGNSLSDIEHEQQRSNESSRYSHLMNKCRTSLDLFFAIWFVMGNLWAFDSRLASYQKAPKLHLLCSFLLVWNAICYSFPFILFLLLCCCVPLISSLIGYNINMGSTEKGALDDQISQLPCWRYQAVEANINPGSQPDNSNTGLLKEDPECCICLAKYIDKEEVRQLPCSHVFHLKCVDKWLAITSSCPLYKERLFSMINSGYFVSGPSCNCSATGSFISNSLVEEDGVGADVRDDNSVALPASFWVRIAMRVSRARWFIFLRRVFHYQNGSRSDLGSDPFNSSSWMAMELVAMVFQLAITVFFLAISETEKPVWPMRLWIVGYDLGCTLSLLLLYGRYWHLYLMRGEHVSLSETEQRRSSQASRSLHLMNKCRSSLELFFAIWFVMGNVWIVDSRFSSFQRAPKLHLLCVFLLVWNAICYSFPFILFLLLCCCVPLVSSLLGYNINMASTDKGASDDQISELPCWRYKVSSMQPGSKKGLPKEDPRILFCRVVASNCQILSLPTVNNVLFSKSKFLEVYSLLKSELLHDPAFEFTDDSRQWVDRMLDYNVPGGKLNRGLSVVDSYKLLKQGEKLTEDEVFLASALGWCIEWLQAYFLVLDDIMDNSVTRRGQPCWFRVPKVGMVAVNDGILLRNHIPRILKNHFREKPYYVDLLELFNEVEFQTASGQMIDLITTLEGEKDLSKYSLPLHHRIVQYKTAYYSFYLPVACALLMAGENLDNHNDVKNILIDMGTYFQVQDDYLDCFGHPDVIGKIGTDIEDFKCSWLVVKALELSDGKQRTLLHENYGKADKDCVAKVKELYKALNLEGVFAEYESKSYEKLLKSIEIHPSGAVQAVLKSFLAKIYKRQK | 1000 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
2 | 23889611 | 23904650 | - | Lsi02G018110.1 | Lsi02g01811 | 656553 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lsi02g01811 | 1000 | ProSitePatterns | Polyprenyl synthases signature 1. | 748 | 762 | IPR033749 | - | |
Lsi02g01811 | 1000 | Gene3D | Farnesyl Diphosphate Synthase | 656 | 999 | IPR008949 | - | |
Lsi02g01811 | 1000 | SFLD | Polyprenyl Transferase Like | 690 | 998 | - | - | |
Lsi02g01811 | 1000 | SMART | ring_2 | 301 | 341 | IPR001841 | - | |
Lsi02g01811 | 1000 | PANTHER | C3H4 TYPE ZINC FINGER PROTEIN | 33 | 344 | - | - | |
Lsi02g01811 | 1000 | PANTHER | C3H4 TYPE ZINC FINGER PROTEIN | 372 | 641 | - | - | |
Lsi02g01811 | 1000 | ProSitePatterns | Polyprenyl synthases signature 2. | 882 | 894 | IPR033749 | - | |
Lsi02g01811 | 1000 | ProSiteProfiles | Zinc finger RING-type profile. | 301 | 342 | IPR001841 | - | |
Lsi02g01811 | 1000 | SFLD | Isoprenoid Synthase Type I | 690 | 998 | - | - | |
Lsi02g01811 | 1000 | SUPERFAMILY | Terpenoid synthases | 666 | 999 | IPR008949 | - | |
Lsi02g01811 | 1000 | CDD | Trans_IPPS_HT | 688 | 998 | IPR000092 | GO:0008299 | |
Lsi02g01811 | 1000 | Pfam | Polyprenyl synthetase | 691 | 954 | IPR000092 | GO:0008299 | |
Lsi02g01811 | 1000 | Pfam | Ring finger domain | 300 | 340 | IPR001841 | - | |
Lsi02g01811 | 1000 | SUPERFAMILY | RING/U-box | 294 | 340 | - | - | |
Lsi02g01811 | 1000 | PANTHER | RING/U-BOX SUPERFAMILY PROTEIN | 33 | 344 | - | - | |
Lsi02g01811 | 1000 | CDD | RING-H2_RNF111_like | 299 | 340 | - | - | |
Lsi02g01811 | 1000 | PANTHER | RING/U-BOX SUPERFAMILY PROTEIN | 372 | 641 | - | - | |
Lsi02g01811 | 1000 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 251 | 346 | IPR013083 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lsi02g01180 | Lsi-Chr2:14654565 | Lsi02g01811 | Lsi-Chr2:23889611 | 0 | dispersed | |
Lsi02g01811 | Lsi-Chr2:23889611 | Lsi08g01150 | Lsi-Chr8:20129694 | 1.07E-09 | dispersed | |
Lsi02g01811 | Lsi-Chr2:23889611 | Lsi01g01744 | Lsi-Chr1:16245384 | 5.90E-14 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lsi02g01811 | K00787 | - | csv:101217388 | 652.514 |