Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi02g01811 ATGATTCATTCTGGTTTCTTCCTTTCGGGACCGTCGTTTAATTCTGATGCTACTACATCTTTCATATCAATTCCGGTGTCTGGAGAAGATGGCGCTACTGCTGATGATATCAGAAACCATACCTCTGATTCCGCCCCCCCTTCTTTTTGGGTTAGAATGGCGATGAAAATATCTAGAGCTAGATGGTTTATTTTCTTGAGAAGAGTTTTCCACTACCAAAACGGATCGAGATCTGATCTTGGGCCGAATCCTTTCAATTCGGGTTCGTGGATGGCAATGGAACTTGTAGCTCTGTTGTTTCAGCTAATTATTTCAGCATTTACTCTTGCCATTTCACAGGCTGAGAGGCCAGTTTGGCCTATGAGATTGTGGATAGGTGGTTATGATCTTGGCTGTGTTCTTAGCTTATTGCTTCTCTACGGCCGCCATCGGTATCATTATCTAATGCAGGGAGATGGTAACAGTCTTTCAGATATCGAACACGAACAGCAGAGGAGCAATGAATCATCAAGGTACTCACATTTGATGAACAAATGCCGCACATCTCTTGATCTTTTCTTTGCAATATGGTTTGTAATGGGCAATCTTTGGGCCTTCGATTCTCGCTTAGCCTCGTACCAGAAAGCTCCCAAGCTACATCTTCTATGCAGCTTCCTGCTAGTTTGGAATGCCATCTGCTACTCTTTCCCATTTATTCTGTTTCTGCTGCTATGTTGCTGTGTGCCATTGATTAGTAGCCTTATAGGGTATAACATTAACATGGGATCAACCGAAAAAGGGGCATTAGATGATCAAATTTCCCAGCTACCTTGCTGGAGATACCAAGCGGTTGAAGCCAACATCAACCCCGGAAGTCAACCCGATAATAGCAATACAGGACTTCTAAAAGAGGATCCAGAATGTTGCATTTGCCTTGCCAAGTATATAGACAAGGAAGAAGTGAGACAGTTGCCTTGTTCCCATGTATTTCATCTCAAGTGTGTAGATAAGTGGCTTGCTATTACATCTTCATGCCCTCTCTATAAGGAAAGGTTGTTTTCAATGATCAATTCTGGTTATTTCGTTTCGGGGCCGTCGTGTAACTGCAGTGCCACTGGTTCCTTTATCTCAAATTCATTGGTGGAAGAAGATGGTGTGGGTGCGGATGTTAGAGATGACAATTCTGTTGCTCTCCCTGCATCTTTCTGGGTTAGGATAGCGATGAGAGTATCTAGAGCCAGGTGGTTCATTTTCTTACGAAGGGTATTTCACTACCAGAACGGATCAAGATCAGATCTCGGGTCTGATCCTTTCAATTCTAGCTCGTGGATGGCTATGGAGCTGGTAGCTATGGTGTTTCAGCTGGCCATCACAGTGTTTTTTCTTGCCATTTCAGAGACGGAGAAGCCAGTTTGGCCTATGAGACTGTGGATAGTTGGTTATGATCTTGGCTGCACTCTTAGTTTGTTGCTTCTCTACGGGCGATATTGGCATCTTTATTTAATGCGTGGAGAGCATGTCAGCCTTTCTGAGACTGAGCAGCGGAGGAGCAGTCAAGCATCAAGGAGCTTGCATTTGATGAACAAATGCCGGTCATCTCTTGAACTTTTCTTTGCAATATGGTTCGTAATGGGTAATGTTTGGATCGTCGATTCTCGCTTCAGTTCTTTCCAAAGAGCTCCCAAGCTTCATCTGCTATGTGTCTTCTTATTAGTTTGGAATGCCATCTGCTACTCCTTTCCATTCATTCTTTTTCTACTGCTTTGTTGCTGTGTGCCATTGGTTAGTAGCCTTCTAGGATATAACATTAACATGGCGTCAACCGACAAAGGAGCATCGGATGATCAAATATCCGAGCTACCGTGCTGGAGATATAAAGTGAGCTCAATGCAACCTGGTAGTAAAAAAGGACTTCCAAAAGAGGATCCACGAATACTATTTTGTCGTGTGGTTGCAAGTAATTGTCAAATCTTATCCCTACCAACTGTCAACAATGTCTTATTCTCAAAGTCCAAATTCTTGGAGGTTTACTCATTGTTGAAATCCGAGCTCCTTCACGACCCTGCTTTCGAGTTCACTGACGATTCTCGCCAATGGGTCGACCGGATGCTGGATTACAATGTACCTGGAGGAAAGTTGAACAGAGGTCTCTCTGTCGTTGATAGCTACAAGTTACTAAAACAAGGGGAAAAGTTAACTGAAGATGAAGTGTTTCTGGCTTCTGCACTTGGTTGGTGCATTGAATGGCTTCAAGCATATTTCCTTGTTCTTGACGATATCATGGATAATTCTGTTACACGACGTGGACAACCTTGCTGGTTCAGGGTACCAAAGGTTGGAATGGTTGCTGTAAATGATGGCATATTGTTACGAAACCATATCCCGAGAATCCTCAAGAATCATTTCAGAGAAAAGCCTTATTATGTGGATCTTTTGGAGTTGTTTAATGAGGTAGAATTTCAAACAGCCTCAGGACAGATGATAGATTTAATTACCACACTAGAAGGAGAGAAAGATCTATCAAAGTACTCATTACCTCTTCATCATCGCATTGTTCAGTACAAAACTGCATACTACTCGTTCTACCTTCCGGTTGCATGTGCATTACTAATGGCAGGTGAAAATTTGGACAATCATAATGATGTCAAGAACATTCTCATTGATATGGGAACCTATTTCCAAGTGCAGGATGATTATCTGGATTGTTTTGGTCATCCTGATGTGATAGGGAAGATTGGAACAGATATTGAAGATTTCAAATGCTCTTGGTTGGTTGTGAAAGCACTAGAACTAAGTGATGGGAAACAGAGGACTTTGCTACATGAGAACTATGGGAAAGCAGATAAGGATTGTGTTGCCAAAGTGAAAGAGTTATATAAAGCCCTCAATCTAGAGGGCGTATTTGCCGAGTACGAGAGCAAAAGTTACGAGAAGCTTCTAAAATCCATAGAAATTCATCCAAGTGGTGCAGTACAAGCAGTGTTGAAATCTTTCCTTGCAAAGATATACAAGAGGCAGAAATAG 3003 42.29 MIHSGFFLSGPSFNSDATTSFISIPVSGEDGATADDIRNHTSDSAPPSFWVRMAMKISRARWFIFLRRVFHYQNGSRSDLGPNPFNSGSWMAMELVALLFQLIISAFTLAISQAERPVWPMRLWIGGYDLGCVLSLLLLYGRHRYHYLMQGDGNSLSDIEHEQQRSNESSRYSHLMNKCRTSLDLFFAIWFVMGNLWAFDSRLASYQKAPKLHLLCSFLLVWNAICYSFPFILFLLLCCCVPLISSLIGYNINMGSTEKGALDDQISQLPCWRYQAVEANINPGSQPDNSNTGLLKEDPECCICLAKYIDKEEVRQLPCSHVFHLKCVDKWLAITSSCPLYKERLFSMINSGYFVSGPSCNCSATGSFISNSLVEEDGVGADVRDDNSVALPASFWVRIAMRVSRARWFIFLRRVFHYQNGSRSDLGSDPFNSSSWMAMELVAMVFQLAITVFFLAISETEKPVWPMRLWIVGYDLGCTLSLLLLYGRYWHLYLMRGEHVSLSETEQRRSSQASRSLHLMNKCRSSLELFFAIWFVMGNVWIVDSRFSSFQRAPKLHLLCVFLLVWNAICYSFPFILFLLLCCCVPLVSSLLGYNINMASTDKGASDDQISELPCWRYKVSSMQPGSKKGLPKEDPRILFCRVVASNCQILSLPTVNNVLFSKSKFLEVYSLLKSELLHDPAFEFTDDSRQWVDRMLDYNVPGGKLNRGLSVVDSYKLLKQGEKLTEDEVFLASALGWCIEWLQAYFLVLDDIMDNSVTRRGQPCWFRVPKVGMVAVNDGILLRNHIPRILKNHFREKPYYVDLLELFNEVEFQTASGQMIDLITTLEGEKDLSKYSLPLHHRIVQYKTAYYSFYLPVACALLMAGENLDNHNDVKNILIDMGTYFQVQDDYLDCFGHPDVIGKIGTDIEDFKCSWLVVKALELSDGKQRTLLHENYGKADKDCVAKVKELYKALNLEGVFAEYESKSYEKLLKSIEIHPSGAVQAVLKSFLAKIYKRQK 1000
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 23889611 23904650 - Lsi02G018110.1 Lsi02g01811 656553
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi02g01811 1000 ProSitePatterns Polyprenyl synthases signature 1. 748 762 IPR033749 -
Lsi02g01811 1000 Gene3D Farnesyl Diphosphate Synthase 656 999 IPR008949 -
Lsi02g01811 1000 SFLD Polyprenyl Transferase Like 690 998 - -
Lsi02g01811 1000 SMART ring_2 301 341 IPR001841 -
Lsi02g01811 1000 PANTHER C3H4 TYPE ZINC FINGER PROTEIN 33 344 - -
Lsi02g01811 1000 PANTHER C3H4 TYPE ZINC FINGER PROTEIN 372 641 - -
Lsi02g01811 1000 ProSitePatterns Polyprenyl synthases signature 2. 882 894 IPR033749 -
Lsi02g01811 1000 ProSiteProfiles Zinc finger RING-type profile. 301 342 IPR001841 -
Lsi02g01811 1000 SFLD Isoprenoid Synthase Type I 690 998 - -
Lsi02g01811 1000 SUPERFAMILY Terpenoid synthases 666 999 IPR008949 -
Lsi02g01811 1000 CDD Trans_IPPS_HT 688 998 IPR000092 GO:0008299
Lsi02g01811 1000 Pfam Polyprenyl synthetase 691 954 IPR000092 GO:0008299
Lsi02g01811 1000 Pfam Ring finger domain 300 340 IPR001841 -
Lsi02g01811 1000 SUPERFAMILY RING/U-box 294 340 - -
Lsi02g01811 1000 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 33 344 - -
Lsi02g01811 1000 CDD RING-H2_RNF111_like 299 340 - -
Lsi02g01811 1000 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 372 641 - -
Lsi02g01811 1000 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 251 346 IPR013083 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g01180 Lsi-Chr2:14654565 Lsi02g01811 Lsi-Chr2:23889611 0 dispersed
Lsi02g01811 Lsi-Chr2:23889611 Lsi08g01150 Lsi-Chr8:20129694 1.07E-09 dispersed
Lsi02g01811 Lsi-Chr2:23889611 Lsi01g01744 Lsi-Chr1:16245384 5.90E-14 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi02g01811 K00787 - csv:101217388 652.514