Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi02g01812 ATGGAGCTCGTCCCTTACTCTGACCCATCTTCCAATTCCAATTCCAATTCCAATTCCAATTCCTCAAGCCCTCCATGGCAGGACATGTTCAGATCCGCTTCAATTCGAAAACCCAGCCCCGACCCTCAAAACCAATCTTCCAAACCCACTCAATCCGATTCCAATTCCTCCTTCTCCGGTGATCCTCAGGTCCGCCTTGCCCTTTACATCGCCATGGCTCATGCCGGCCTTGCCTTCACCATTCTCACTCTCTACGCCGTCGGTCGCATCCTCGAAGCCTATCTCCGCCCCCTTCAGTGGGCTGTCCTCTGTTCTATCCCTCTTCGTGGCATTCAGCAAACCCTTGAAGGCTTCTGGTACGAACCCCTTCAATTGGGCCTTACCGAGACTCTTCTCGCTATCCCTGTTGCTGTTTTTCAGGTTTTTGTTGGAACCCTTGTTCAATTTCGAGAAGTTTGTTTTCGGGTTGTTCTTAGGAGGAAGAAATCTGGGCCTGTTAGAAGGAATCAGAGTGTGTTTTCTAAGTTGTTGCGATGGCTTGTGTCGTTTTGGATTTTTATACTTGCTTATGAGAACTTTGGTGTTGTTGGGTCTGTTTCGCTTCTTGGGTTAGGCTTTTTGTTTAGTTCTAAGTCTGTGGATCCTACTAAGTATAATGTTTCTTCGTTTCGTAGCTTGAGTTTTCGTCGTACTGCTGTTAGTGCGTTTTTCACTACAGGCCTTTTGAAAAGATTGAAAACCATTGTTGCAATTGGCTTGATTGTTGCTATGATTGTTGTGTTCTTGGCTGGATTGGTGTTTTTCTCTTACAAAATTGGGGTTGAAGGGAAAGATGCTATGATTTCGTTGAAACTACATGTGGAAGAGAGCAACTATGCGGAGAGGATTGGGGTTAAGAAGTGGATGGAAGAGAATGATATGCCTGGGATGATTGATAGCTACACCACCAAGTTTTATGAAGCAGTGTTGGAACAGATAGATAGCTTGGCTATGCAGTACAATATGACGGAGTTTGTCACTGGGATTAAGCATTTGGCTTTATCATCATCCCGTGCTAACTCTTCAGGGCCTTCGACTTCTCTAATGACTCCATCGCCGTACACGCAAAAACTTATGAGCTTGAGAAACCGAATTAGTAACAAGGAATGGGGTCAGATTTATACAGAGCTGGATGCAATTATTAGGGAGTTGATAATCACTAGGGAGGATTTAGTTGAGAAAGCAAAAGGATTGGCTGTTCAAGGGATGGATATTTCGCAGCGAGTCTTTGCTAGCAGTGTATCAGTACTAGGAGGCAGTGCGAAGCTAATGCTTTCGATTGGTAGTTCTATCATTTCAGGAGCAGCTGAGGTTTTCAACTTTGTCTCTCAGTCGATGGTGTTCTTTTGGGTTCTGTATTATCTCATCACTTCTGAATCTGGCGGTGTGACTGAACAAGTTATGTATATGCTTCCAATTGAAGATTCAGCTCGAATTCGGTGTGTTGAAGTTCTTGACCATGCAATTTCGGGTGTTCTTTTGGCTACAGCAGAGATTGCAATCTATCAAGGATGTCTTACATGGCTCTTGCTTAGACTATTTGAAATACATTTCTTGTATGTGTCCACTGTTCTTGCATTTCTCAGTCCTCTTTTCCCAATTTTTCCTTCTTGGTTTGCAACCATTCCAGCAGCCTTGCAGCTGCTGCTGGAAGGTAGATATGTAGTAGCCATCTGTTTGGCCATTATTCACCTTGCGCTCATGGATTATGGCATCTCGGAAATTCAAGAGGACATACCTGGTCACAGTGAATACCTTATGGGACTTAGCATCATTGGTGGAATGACTTTGTTTTCATCTGCGTTGGAGGGTGCGATTATGGGACCGTTGATTACAACCGTCATGATAGCTCTCAAGGATTTATATGTGGAATTTGTTCTGGGTGAAAATAAAGGAAAGGAGAAGGAGAAAGAAAAGGAAAAGTGCAACTAG 1971 43.84 MELVPYSDPSSNSNSNSNSNSSSPPWQDMFRSASIRKPSPDPQNQSSKPTQSDSNSSFSGDPQVRLALYIAMAHAGLAFTILTLYAVGRILEAYLRPLQWAVLCSIPLRGIQQTLEGFWYEPLQLGLTETLLAIPVAVFQVFVGTLVQFREVCFRVVLRRKKSGPVRRNQSVFSKLLRWLVSFWIFILAYENFGVVGSVSLLGLGFLFSSKSVDPTKYNVSSFRSLSFRRTAVSAFFTTGLLKRLKTIVAIGLIVAMIVVFLAGLVFFSYKIGVEGKDAMISLKLHVEESNYAERIGVKKWMEENDMPGMIDSYTTKFYEAVLEQIDSLAMQYNMTEFVTGIKHLALSSSRANSSGPSTSLMTPSPYTQKLMSLRNRISNKEWGQIYTELDAIIRELIITREDLVEKAKGLAVQGMDISQRVFASSVSVLGGSAKLMLSIGSSIISGAAEVFNFVSQSMVFFWVLYYLITSESGGVTEQVMYMLPIEDSARIRCVEVLDHAISGVLLATAEIAIYQGCLTWLLLRLFEIHFLYVSTVLAFLSPLFPIFPSWFATIPAALQLLLEGRYVVAICLAIIHLALMDYGISEIQEDIPGHSEYLMGLSIIGGMTLFSSALEGAIMGPLITTVMIALKDLYVEFVLGENKGKEKEKEKEKCN 656
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 23915048 23918650 - Lsi02G018120.1 Lsi02g01812 656554

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi02g01812 656 PANTHER TRANSMEMBRANE PROTEIN 1 646 IPR002549 -
Lsi02g01812 656 MobiDBLite consensus disorder prediction 1 59 - -
Lsi02g01812 656 PANTHER TRANSMEMBRANE PROTEIN C9ORF5 PROTEIN 1 646 - -
Lsi02g01812 656 MobiDBLite consensus disorder prediction 37 59 - -
Lsi02g01812 656 Pfam AI-2E family transporter 436 630 IPR002549 -
Lsi02g01812 656 MobiDBLite consensus disorder prediction 1 29 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi02g01812 - - - csv:101216912 1152.12
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g711 Blo03g00498 . Bda07g00421 . Bpe09g00113 . . Bma13g01128 . . Cma01g01064 Cma09g01023 Car01g00938 Car09g00927 Sed07g2753 Cpe06g00831 Cpe02g00833 Bhi09g01795 Tan01g3211 Cmetu01g1220 . . Mch11g1299 . . . . . . . . . . . . Lsi02g01812 . . . . Blo10g00876 . Bda12g00979 Bpe11g00596 . . Bma14g00673 . Cmo01g01106 Cmo09g01026 . . . . . . . . . . . . . Cla09g02093 Cam09g2179 Cec09g2246 . . . . . . Chy01g01126 Cme01g00877
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004968 2 1 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 2 41
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi02g01812 Lsi_Chr02 FPKM 6.104869 7.947348 10.066131 13.392642 13.799382 12.026072 14.383364 15.026761 13.530684 12.256426